Wall clock time and date at job start Mon Mar 30 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99776 * 2 1 4 4 C 1.38834 * 120.01226 * 0.18806 * 3 2 1 5 5 C 1.38197 * 120.09754 * 180.24995 * 4 3 2 6 6 C 1.38125 * 120.13688 * 359.79728 * 5 4 3 7 7 C 1.38996 * 120.03143 * 359.97438 * 6 5 4 8 8 S 1.76197 * 120.05121 * 179.97438 * 7 6 5 9 9 C 1.81396 * 103.00192 * 0.02562 * 8 7 6 10 10 C 1.38544 * 120.01497 * 180.02562 * 3 2 1 11 11 C 1.50708 * 120.06904 * 0.02562 * 10 3 2 12 12 H 1.09003 * 109.47050 * 194.72359 * 11 10 3 13 13 N 1.46900 * 109.46700 * 314.72432 * 11 10 3 14 14 C 1.50697 * 109.46823 * 74.72141 * 11 10 3 15 15 H 1.07996 * 120.00592 * 336.33804 * 14 11 10 16 16 C 1.37880 * 119.99269 * 156.33577 * 14 11 10 17 17 N 1.31511 * 120.00489 * 356.71019 * 16 14 11 18 18 Si 1.86808 * 119.99472 * 176.43394 * 16 14 11 19 19 H 1.48503 * 109.47126 * 60.00144 * 18 16 14 20 20 H 1.48496 * 109.46936 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47256 * 300.00198 * 18 16 14 22 22 H 1.09002 * 109.46756 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46985 * 299.99449 * 1 2 3 24 24 H 1.09000 * 109.47402 * 59.99944 * 1 2 3 25 25 H 1.07999 * 119.94965 * 0.02584 * 4 3 2 26 26 H 1.08004 * 119.92670 * 179.76891 * 5 4 3 27 27 H 1.08000 * 119.98664 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47276 * 60.00381 * 9 8 7 29 29 H 1.09002 * 109.47278 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47137 * 299.99982 * 9 8 7 31 31 H 1.00899 * 111.00200 * 68.42878 * 13 11 10 32 32 H 1.00900 * 110.99795 * 192.38706 * 13 11 10 33 33 H 0.97001 * 119.99627 * 5.39597 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2900 2.3754 0.0039 5 6 1.9155 3.6077 -0.0013 6 6 3.2945 3.6854 -0.0062 7 6 4.0568 2.5231 -0.0054 8 16 5.8160 2.6216 -0.0123 9 6 6.1246 4.4091 -0.0184 10 6 3.4294 1.2838 -0.0005 11 6 4.2522 0.0211 -0.0017 12 1 5.2834 0.2592 0.2592 13 7 3.7032 -0.9217 0.9820 14 6 4.2121 -0.6032 -1.3727 15 1 3.3904 -0.3889 -2.0399 16 6 5.2246 -1.4480 -1.7752 17 7 6.2574 -1.6582 -0.9886 18 14 5.1257 -2.3001 -3.4347 19 1 5.0602 -1.2799 -4.5118 20 1 6.3298 -3.1473 -3.6286 21 1 3.9089 -3.1499 -3.4831 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2115 2.3181 0.0074 26 1 1.3247 4.5118 -0.0019 27 1 3.7808 4.6497 -0.0107 28 1 5.6836 4.8570 0.8721 29 1 7.1991 4.5923 -0.0225 30 1 5.6767 4.8521 -0.9079 31 1 2.8001 -1.2640 0.6900 32 1 4.3427 -1.6844 1.1478 33 1 6.2706 -1.2822 -0.0946 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259990395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:58 Heat of formation + Delta-G solvation = -36.195638 kcal Electronic energy + Delta-G solvation = -16959.495477 eV Core-core repulsion = 14303.679632 eV Total energy + Delta-G solvation = -2655.815845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08382 -38.26264 -36.79429 -33.50131 -31.60695 -31.11058 -29.52756 -28.12228 -27.27094 -24.67438 -23.26592 -22.09156 -19.37179 -18.83340 -17.60816 -17.07185 -16.69683 -16.52210 -15.80100 -15.69012 -15.13576 -15.00536 -14.86177 -14.48787 -14.16542 -13.80822 -13.54824 -13.40538 -12.92518 -12.69683 -12.45047 -12.36441 -12.00589 -11.99611 -11.69580 -11.45536 -10.71319 -10.61696 -10.42087 -9.28667 -8.98291 -8.53460 -8.28031 -6.30892 0.31726 0.58409 0.67051 1.48448 1.55656 1.66283 1.75611 2.53900 2.56913 2.81649 3.21636 3.93572 4.08006 4.16115 4.28722 4.29797 4.30532 4.44516 4.50606 4.60355 4.71191 4.74939 4.81887 4.94686 5.08699 5.37766 5.46239 5.59916 5.86660 5.98704 6.14160 6.57993 6.61703 6.71125 7.04513 7.46299 8.77294 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016157 B = 0.010700 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.555342 B = 2616.223432 C = 3762.411571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.133 3.867 4 C -0.218 4.218 5 C -0.077 4.077 6 C -0.176 4.176 7 C -0.072 4.072 8 S -0.163 6.163 9 C -0.139 4.139 10 C -0.086 4.086 11 C 0.235 3.765 12 H 0.034 0.966 13 N -0.843 5.843 14 C -0.608 4.608 15 H 0.029 0.971 16 C -0.020 4.020 17 N -0.928 5.928 18 Si 1.109 2.891 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.273 1.273 22 H 0.111 0.889 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.155 0.845 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.337 0.663 32 H 0.316 0.684 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 11.399 1.574 14.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.085 3.915 4 C -0.239 4.239 5 C -0.096 4.096 6 C -0.199 4.199 7 C -0.185 4.185 8 S 0.080 5.920 9 C -0.306 4.306 10 C -0.092 4.092 11 C 0.125 3.875 12 H 0.052 0.948 13 N -0.372 5.372 14 C -0.648 4.648 15 H 0.048 0.952 16 C -0.220 4.220 17 N -0.565 5.565 18 Si 0.932 3.068 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.198 1.198 22 H 0.129 0.871 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.173 0.827 26 H 0.182 0.818 27 H 0.165 0.835 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.695 10.050 1.068 12.702 hybrid contribution -1.649 1.041 0.311 1.975 sum -9.344 11.091 1.379 14.568 Atomic orbital electron populations 1.23303 0.77392 1.05045 1.01928 1.86092 1.22534 1.26729 1.88303 1.18845 0.91050 0.85338 0.96219 1.21523 1.00940 0.91696 1.09716 1.21110 0.93549 0.97868 0.97095 1.21285 0.95007 0.96373 1.07279 1.21496 0.96651 0.95669 1.04693 1.86332 1.01581 1.11706 1.92403 1.23793 1.07420 0.93074 1.06362 1.19321 0.92310 0.94705 1.02880 1.17833 0.92297 0.87522 0.89862 0.94844 1.59553 1.07544 1.20543 1.49594 1.22581 1.09905 1.30018 1.02258 0.95211 1.27072 0.91530 0.96044 1.07316 1.70907 1.30057 1.45971 1.09588 0.83037 0.76384 0.75849 0.71564 1.20410 1.20718 1.19843 0.87108 0.91414 0.92062 0.82722 0.81799 0.83501 0.88551 0.86019 0.88930 0.84798 0.87423 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.32 -12.81 7.34 -92.45 -0.68 -13.49 16 3 C 0.13 5.49 6.46 22.49 0.15 5.64 16 4 C -0.22 -6.89 9.04 22.40 0.20 -6.69 16 5 C -0.08 -2.17 10.03 22.23 0.22 -1.94 16 6 C -0.18 -5.70 9.36 22.42 0.21 -5.49 16 7 C -0.07 -3.03 6.11 22.61 0.14 -2.89 16 8 S -0.16 -6.61 20.56 -56.49 -1.16 -7.77 16 9 C -0.14 -3.46 9.15 113.37 1.04 -2.43 16 10 C -0.09 -4.08 4.95 -19.63 -0.10 -4.18 16 11 C 0.23 12.68 2.30 43.42 0.10 12.78 16 12 H 0.03 1.99 4.89 -2.39 -0.01 1.97 16 13 N -0.84 -42.88 8.98 -174.94 -1.57 -44.45 16 14 C -0.61 -35.45 8.33 25.60 0.21 -35.23 16 15 H 0.03 1.79 7.80 -2.91 -0.02 1.77 16 16 C -0.02 -1.16 5.46 84.66 0.46 -0.69 16 17 N -0.93 -57.20 13.62 21.45 0.29 -56.91 16 18 Si 1.11 52.22 29.91 68.60 2.05 54.27 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.07 1.46 7.65 -2.39 -0.02 1.44 16 24 H 0.06 1.39 7.67 -2.39 -0.02 1.37 16 25 H 0.16 3.68 6.29 -2.91 -0.02 3.66 16 26 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.15 3.71 5.87 -2.91 -0.02 3.69 16 28 H 0.10 2.04 7.75 -2.39 -0.02 2.03 16 29 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.09 2.07 7.75 -2.39 -0.02 2.05 16 31 H 0.34 16.60 6.25 -89.69 -0.56 16.04 16 32 H 0.32 16.51 8.83 -89.69 -0.79 15.72 16 33 H 0.26 16.20 6.47 -92.71 -0.60 15.60 16 Total: -1.00 -72.78 284.25 2.64 -70.14 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.04 Total: 37.75 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 3.75 Total: -39.55 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -1.28 Total: -101.35 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.68 Total: -13.49 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 2.05 Total: 54.27 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -1.16 Total: -7.77 kcal Total: -72.78 2.64 -70.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259990395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.944 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds