Wall clock time and date at job start Mon Mar 30 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76200 * 103.00178 * 2 1 4 4 C 1.39035 * 120.04820 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.02884 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.13532 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.95209 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47519 * 219.97954 * 7 6 5 9 9 N 1.46898 * 109.46994 * 339.97826 * 7 6 5 10 10 C 1.53000 * 109.47218 * 99.97587 * 7 6 5 11 11 C 1.50703 * 109.46916 * 175.00401 * 10 7 6 12 12 H 1.07998 * 120.00147 * 359.97438 * 11 10 7 13 13 C 1.37874 * 119.99865 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00374 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00007 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47317 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46833 * 119.99838 * 15 13 11 18 18 H 1.48497 * 109.47136 * 240.00019 * 15 13 11 19 19 C 1.38795 * 120.10141 * 0.02562 * 6 5 4 20 20 O 1.35898 * 120.01215 * 179.97438 * 19 6 5 21 21 C 1.38587 * 119.96877 * 359.97438 * 19 6 5 22 22 H 1.09002 * 109.47709 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47162 * 299.99937 * 1 2 3 24 24 H 1.09004 * 109.47515 * 59.99770 * 1 2 3 25 25 H 1.08003 * 119.98672 * 359.74235 * 4 3 2 26 26 H 1.08004 * 119.93788 * 179.97438 * 5 4 3 27 27 H 1.00900 * 111.00224 * 296.05026 * 9 7 6 28 28 H 1.00903 * 111.00500 * 59.99784 * 9 7 6 29 29 H 1.08998 * 109.47213 * 294.99896 * 10 7 6 30 30 H 1.08994 * 109.47046 * 55.00727 * 10 7 6 31 31 H 0.96999 * 120.00248 * 180.02562 * 14 13 11 32 32 H 0.96695 * 114.00294 * 270.01754 * 20 19 6 33 33 H 1.08006 * 120.06381 * 180.02562 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1943 2.6659 0.0005 5 6 1.5055 4.0113 0.0000 6 6 2.8266 4.4181 -0.0005 7 6 3.1614 5.8874 -0.0005 8 1 4.0097 6.0669 -0.6612 9 7 2.0013 6.6540 -0.4741 10 6 3.5190 6.3290 1.4200 11 6 3.9718 7.7663 1.4002 12 1 4.0020 8.3102 0.4677 13 6 4.3486 8.3865 2.5725 14 7 4.3124 7.7241 3.7081 15 14 4.9106 10.1679 2.5479 16 1 4.8603 10.6837 1.1563 17 1 4.0153 10.9813 3.4094 18 1 6.3023 10.2550 3.0586 19 6 3.8452 3.4754 -0.0011 20 8 5.1434 3.8773 -0.0021 21 6 3.5378 2.1240 -0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.1613 2.3508 -0.0032 26 1 0.7150 4.7474 0.0000 27 1 1.7848 6.4269 -1.4331 28 1 1.2011 6.5045 0.1222 29 1 2.6432 6.2329 2.0617 30 1 4.3221 5.7004 1.8046 31 1 4.5772 8.1606 4.5329 32 1 5.5184 3.9937 -0.8858 33 1 4.3293 1.3891 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260017988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:36 Heat of formation + Delta-G solvation = -22.366873 kcal Electronic energy + Delta-G solvation = -16217.061752 eV Core-core repulsion = 13561.845567 eV Total energy + Delta-G solvation = -2655.216185 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77860 -36.48070 -35.42116 -32.44452 -30.34006 -29.92441 -28.80568 -28.09236 -24.59531 -22.34746 -22.21861 -19.76931 -18.59438 -16.58278 -16.43605 -15.99187 -15.49028 -15.00362 -14.71443 -14.25875 -14.09566 -13.96283 -13.73315 -12.90431 -12.71997 -12.47342 -12.28431 -11.93398 -11.55245 -11.11413 -10.81416 -10.67504 -10.55596 -10.27619 -10.09830 -9.78988 -9.07109 -8.99500 -8.58195 -8.24937 -8.00461 -7.33781 -5.85995 -3.84790 1.28866 1.39836 1.43200 2.30524 3.40154 3.47124 3.52602 3.68871 4.45767 4.58234 4.83211 4.84711 4.93310 5.02787 5.24167 5.32297 5.41633 5.51068 5.62327 5.83733 5.95237 6.15815 6.27027 6.43554 6.58540 6.83787 6.94069 7.62176 7.74456 7.94256 8.01631 8.11270 8.16742 8.57363 9.21298 9.76596 11.25868 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038971 B = 0.004770 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.302960 B = 5868.828966 C = 6016.269777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.128 6.128 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.121 4.121 7 C 0.139 3.861 8 H 0.080 0.920 9 N -0.823 5.823 10 C 0.040 3.960 11 C -0.492 4.492 12 H 0.062 0.938 13 C 0.050 3.950 14 N -0.902 5.902 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.287 1.287 19 C 0.131 3.869 20 O -0.481 6.481 21 C -0.125 4.125 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.126 0.874 27 H 0.321 0.679 28 H 0.334 0.666 29 H 0.012 0.988 30 H 0.028 0.972 31 H 0.257 0.743 32 H 0.385 0.615 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -14.065 -10.227 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.113 5.887 3 C -0.197 4.197 4 C -0.161 4.161 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.027 3.973 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.003 3.997 11 C -0.530 4.530 12 H 0.080 0.920 13 C -0.149 4.149 14 N -0.542 5.542 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.213 1.213 19 C 0.084 3.916 20 O -0.291 6.291 21 C -0.148 4.148 22 H 0.124 0.876 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.148 0.852 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.241 0.759 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.909 -14.442 -9.293 18.162 hybrid contribution -0.945 1.071 -0.370 1.475 sum -6.854 -13.372 -9.663 17.865 Atomic orbital electron populations 1.23637 0.94924 1.06806 1.05709 1.85344 1.06288 1.03816 1.93274 1.21343 0.96060 0.95942 1.06365 1.21042 0.97824 0.93084 1.04159 1.20787 0.95980 0.95079 0.99860 1.21855 0.92816 0.99937 0.98029 1.20697 0.92746 0.82197 1.01635 0.90174 1.58828 1.08740 1.62352 1.05138 1.19116 0.96738 0.96706 0.87155 1.21182 1.41836 0.96393 0.93630 0.91998 1.25021 0.96349 0.97852 0.95719 1.69991 1.49509 1.36469 0.98280 0.86540 0.78047 0.85484 0.77913 1.19761 1.21328 1.21341 1.18117 0.84195 0.90102 0.99224 1.84950 1.22212 1.89199 1.32695 1.20948 0.94741 0.95605 1.03553 0.87611 0.89704 0.89839 0.86101 0.85619 0.86769 0.85174 0.96959 0.95359 0.93346 0.75885 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.15 101.05 0.92 -0.23 16 2 S -0.13 -1.50 22.56 -107.50 -2.43 -3.93 16 3 C -0.08 -1.21 6.11 -39.06 -0.24 -1.45 16 4 C -0.14 -1.89 9.36 -39.34 -0.37 -2.26 16 5 C -0.10 -1.48 9.24 -39.64 -0.37 -1.85 16 6 C -0.12 -2.14 5.09 -104.42 -0.53 -2.67 16 7 C 0.14 2.80 2.58 -68.87 -0.18 2.62 16 8 H 0.08 1.63 7.85 -51.93 -0.41 1.22 16 9 N -0.82 -14.82 8.42 -5.66 -0.05 -14.87 16 10 C 0.04 1.05 4.60 -27.88 -0.13 0.92 16 11 C -0.49 -14.08 8.84 -34.44 -0.30 -14.39 16 12 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 13 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -27.92 13.29 55.43 0.74 -27.18 16 15 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C 0.13 2.22 6.67 -39.25 -0.26 1.96 16 20 O -0.48 -8.06 12.62 -19.42 -0.25 -8.30 16 21 C -0.12 -1.91 9.73 -39.22 -0.38 -2.30 16 22 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 23 H 0.08 0.68 7.75 -51.92 -0.40 0.27 16 24 H 0.08 0.61 7.74 -51.92 -0.40 0.21 16 25 H 0.12 1.33 5.87 -52.48 -0.31 1.03 16 26 H 0.13 1.71 6.24 -52.48 -0.33 1.38 16 27 H 0.32 4.75 9.06 -39.29 -0.36 4.39 16 28 H 0.33 5.75 7.28 -39.29 -0.29 5.47 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.82 8.04 -51.93 -0.42 0.40 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.39 4.36 9.06 45.56 0.41 4.78 16 33 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -33.51 293.86 -7.81 -41.32 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.30 Total: 9.44 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.93 Total: -18.26 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.69 Total: -42.05 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.25 Total: -8.30 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.43 Total: -3.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.51 -7.81 -41.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.956 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds