Wall clock time and date at job start Mon Mar 30 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.76200 * 103.00178 * 2 1 4 4 C 1.39035 * 120.04820 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.02884 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.13532 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.95209 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47519 * 219.97954 * 7 6 5 9 9 N 1.46898 * 109.46994 * 339.97826 * 7 6 5 10 10 C 1.53000 * 109.47218 * 99.97587 * 7 6 5 11 11 C 1.50703 * 109.46916 * 175.00401 * 10 7 6 12 12 H 1.07998 * 120.00147 * 359.97438 * 11 10 7 13 13 C 1.37874 * 119.99865 * 180.02562 * 11 10 7 14 14 N 1.31518 * 120.00374 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00007 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47317 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46833 * 119.99838 * 15 13 11 18 18 H 1.48497 * 109.47136 * 240.00019 * 15 13 11 19 19 C 1.38795 * 120.10141 * 0.02562 * 6 5 4 20 20 O 1.35898 * 120.01215 * 179.97438 * 19 6 5 21 21 C 1.38587 * 119.96877 * 359.97438 * 19 6 5 22 22 H 1.09002 * 109.47709 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47162 * 299.99937 * 1 2 3 24 24 H 1.09004 * 109.47515 * 59.99770 * 1 2 3 25 25 H 1.08003 * 119.98672 * 359.74235 * 4 3 2 26 26 H 1.08004 * 119.93788 * 179.97438 * 5 4 3 27 27 H 1.00900 * 111.00224 * 296.05026 * 9 7 6 28 28 H 1.00903 * 111.00500 * 59.99784 * 9 7 6 29 29 H 1.08998 * 109.47213 * 294.99896 * 10 7 6 30 30 H 1.08994 * 109.47046 * 55.00727 * 10 7 6 31 31 H 0.96999 * 120.00248 * 180.02562 * 14 13 11 32 32 H 0.96695 * 114.00294 * 270.01754 * 20 19 6 33 33 H 1.08006 * 120.06381 * 180.02562 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1943 2.6659 0.0005 5 6 1.5055 4.0113 0.0000 6 6 2.8266 4.4181 -0.0005 7 6 3.1614 5.8874 -0.0005 8 1 4.0097 6.0669 -0.6612 9 7 2.0013 6.6540 -0.4741 10 6 3.5190 6.3290 1.4200 11 6 3.9718 7.7663 1.4002 12 1 4.0020 8.3102 0.4677 13 6 4.3486 8.3865 2.5725 14 7 4.3124 7.7241 3.7081 15 14 4.9106 10.1679 2.5479 16 1 4.8603 10.6837 1.1563 17 1 4.0153 10.9813 3.4094 18 1 6.3023 10.2550 3.0586 19 6 3.8452 3.4754 -0.0011 20 8 5.1434 3.8773 -0.0021 21 6 3.5378 2.1240 -0.0005 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.1613 2.3508 -0.0032 26 1 0.7150 4.7474 0.0000 27 1 1.7848 6.4269 -1.4331 28 1 1.2011 6.5045 0.1222 29 1 2.6432 6.2329 2.0617 30 1 4.3221 5.7004 1.8046 31 1 4.5772 8.1606 4.5329 32 1 5.5184 3.9937 -0.8858 33 1 4.3293 1.3891 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:36 Heat of formation + Delta-G solvation = -47.101319 kcal Electronic energy + Delta-G solvation = -16218.134318 eV Core-core repulsion = 13561.845567 eV Total energy + Delta-G solvation = -2656.288751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03135 -37.74882 -36.97108 -34.56869 -31.44313 -31.13538 -30.28775 -29.40584 -26.36784 -23.97407 -23.47144 -21.34768 -19.79732 -18.48527 -17.67181 -17.29354 -16.84976 -16.64133 -16.16502 -15.85420 -15.20676 -15.02664 -14.63318 -14.36824 -14.26784 -13.59279 -13.44193 -13.35943 -13.14166 -12.98400 -12.59934 -12.43869 -12.14052 -11.75849 -11.63520 -11.22271 -11.09760 -10.52189 -10.41369 -9.76756 -9.46429 -8.36726 -8.10387 -6.17907 0.08696 0.22493 0.52371 1.42337 1.42541 1.45316 1.56686 2.45029 2.52168 3.22012 3.29565 3.77359 3.87526 3.90506 4.04886 4.26985 4.28827 4.39412 4.56850 4.67083 4.82147 4.84932 4.98196 5.08549 5.20524 5.41051 5.51797 5.69146 5.72973 5.87879 6.29926 6.48437 6.81434 6.85890 6.97143 7.48770 9.01453 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038971 B = 0.004770 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.302960 B = 5868.828966 C = 6016.269777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.140 6.140 3 C -0.084 4.084 4 C -0.137 4.137 5 C -0.095 4.095 6 C -0.150 4.150 7 C 0.157 3.843 8 H 0.073 0.927 9 N -0.829 5.829 10 C 0.051 3.949 11 C -0.503 4.503 12 H 0.062 0.938 13 C -0.008 4.008 14 N -0.942 5.942 15 Si 0.964 3.036 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.119 3.881 20 O -0.503 6.503 21 C -0.137 4.137 22 H 0.129 0.871 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.154 0.846 26 H 0.141 0.859 27 H 0.343 0.657 28 H 0.339 0.661 29 H -0.018 1.018 30 H -0.010 1.010 31 H 0.259 0.741 32 H 0.405 0.595 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -14.540 -11.382 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.102 5.898 3 C -0.196 4.196 4 C -0.160 4.160 5 C -0.115 4.115 6 C -0.155 4.155 7 C 0.045 3.955 8 H 0.091 0.909 9 N -0.359 5.359 10 C 0.013 3.987 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.204 4.204 14 N -0.584 5.584 15 Si 0.789 3.211 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.072 3.928 20 O -0.316 6.316 21 C -0.161 4.161 22 H 0.148 0.852 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.171 0.829 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.001 0.999 30 H 0.008 0.992 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.404 -14.932 -10.490 19.693 hybrid contribution -0.543 1.070 -0.029 1.200 sum -7.946 -13.862 -10.518 19.129 Atomic orbital electron populations 1.23809 0.91352 1.08713 1.06651 1.85449 1.10197 1.01486 1.92713 1.21668 0.95743 0.97849 1.04359 1.21377 0.99339 0.92204 1.03073 1.20999 0.95256 0.96373 0.98872 1.21619 0.94248 0.98266 1.01378 1.20103 0.93486 0.84359 0.97552 0.90916 1.58677 1.08304 1.62293 1.06622 1.18864 0.94011 0.95241 0.90547 1.21538 1.41439 0.97578 0.93624 0.91935 1.25954 0.96485 1.02658 0.95325 1.70136 1.50698 1.38559 0.99026 0.85415 0.77565 0.79711 0.78405 1.18585 1.20732 1.20831 1.18320 0.84020 0.90899 0.99535 1.84882 1.22593 1.89391 1.34734 1.21073 0.95872 0.95016 1.04160 0.85248 0.89137 0.88457 0.82871 0.84118 0.84339 0.84638 0.99918 0.99198 0.93244 0.73669 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.15 113.37 1.04 -0.66 16 2 S -0.14 -2.96 22.56 -56.49 -1.27 -4.24 16 3 C -0.08 -2.26 6.11 22.61 0.14 -2.12 16 4 C -0.14 -3.45 9.36 22.43 0.21 -3.24 16 5 C -0.10 -2.79 9.24 22.23 0.21 -2.59 16 6 C -0.15 -5.32 5.09 -19.73 -0.10 -5.42 16 7 C 0.16 6.45 2.58 44.17 0.11 6.56 16 8 H 0.07 3.03 7.85 -2.39 -0.02 3.01 16 9 N -0.83 -29.42 8.42 -171.81 -1.45 -30.87 16 10 C 0.05 2.77 4.60 29.85 0.14 2.90 16 11 C -0.50 -29.41 8.84 25.60 0.23 -29.19 16 12 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 13 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 14 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 15 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 19 C 0.12 4.13 6.67 22.49 0.15 4.28 16 20 O -0.50 -17.56 12.62 -92.40 -1.17 -18.72 16 21 C -0.14 -4.19 9.73 22.50 0.22 -3.97 16 22 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.09 1.09 7.75 -2.39 -0.02 1.07 16 24 H 0.10 1.00 7.74 -2.39 -0.02 0.98 16 25 H 0.15 2.80 5.87 -2.91 -0.02 2.78 16 26 H 0.14 3.59 6.24 -2.91 -0.02 3.57 16 27 H 0.34 9.66 9.06 -89.69 -0.81 8.85 16 28 H 0.34 11.46 7.28 -89.69 -0.65 10.81 16 29 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H -0.01 -0.63 8.04 -2.39 -0.02 -0.65 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.40 9.58 9.06 -74.06 -0.67 8.91 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -73.73 293.86 0.24 -73.49 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.98 Total: 25.04 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 2.80 Total: -33.47 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -1.16 Total: -90.41 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.17 Total: -18.72 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -1.27 Total: -4.24 kcal Total: -73.73 0.24 -73.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.385 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds