Wall clock time and date at job start Mon Mar 30 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00022 * 2 1 4 4 C 1.39036 * 120.05070 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.02807 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.13493 * 359.97294 * 5 4 3 7 7 C 1.50703 * 119.94827 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47343 * 144.99771 * 7 6 5 9 9 N 1.46905 * 109.47075 * 24.99929 * 7 6 5 10 10 C 1.53001 * 109.47072 * 265.00105 * 7 6 5 11 11 C 1.50703 * 109.47072 * 185.00098 * 10 7 6 12 12 H 1.07998 * 120.00155 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99814 * 180.02562 * 11 10 7 14 14 N 1.31510 * 120.00394 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47114 * 89.99550 * 15 13 11 17 17 H 1.48501 * 109.46937 * 209.99561 * 15 13 11 18 18 H 1.48502 * 109.46948 * 329.99298 * 15 13 11 19 19 C 1.38785 * 120.10742 * 0.27921 * 6 5 4 20 20 O 1.35892 * 120.02009 * 179.72582 * 19 6 5 21 21 C 1.38593 * 119.96665 * 359.49146 * 19 6 5 22 22 H 1.09004 * 109.46897 * 300.00041 * 1 2 3 23 23 H 1.09000 * 109.47354 * 59.99830 * 1 2 3 24 24 H 1.08994 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.98526 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.93044 * 179.97438 * 5 4 3 27 27 H 1.00901 * 110.99869 * 176.04968 * 9 7 6 28 28 H 1.00896 * 110.99543 * 300.00090 * 9 7 6 29 29 H 1.08999 * 109.47045 * 304.99692 * 10 7 6 30 30 H 1.09002 * 109.47037 * 64.99916 * 10 7 6 31 31 H 0.96999 * 120.00132 * 180.02562 * 14 13 11 32 32 H 0.96707 * 114.00379 * 89.99579 * 20 19 6 33 33 H 1.07998 * 120.07051 * 180.25942 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1944 2.6660 0.0005 5 6 1.5056 4.0114 0.0011 6 6 2.8266 4.4181 0.0016 7 6 3.1614 5.8875 0.0028 8 1 4.0627 6.0543 0.5926 9 7 2.0462 6.6434 0.5885 10 6 3.3976 6.3579 -1.4338 11 6 3.8517 7.7948 -1.4237 12 1 3.9606 8.3201 -0.4863 13 6 4.1272 8.4391 -2.6111 14 7 3.9941 7.7997 -3.7525 15 14 4.6894 10.2205 -2.5985 16 1 6.1711 10.2714 -2.5144 17 1 4.2411 10.8898 -3.8460 18 1 4.1028 10.9165 -1.4251 19 6 3.8452 3.4755 -0.0042 20 8 5.1434 3.8774 -0.0092 21 6 3.5379 2.1241 0.0001 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.1614 2.3509 0.0005 26 1 0.7151 4.7474 0.0011 27 1 2.2721 7.6242 0.6598 28 1 1.1984 6.5051 0.0593 29 1 4.1646 5.7378 -1.8977 30 1 2.4703 6.2738 -2.0007 31 1 4.1883 8.2529 -4.5878 32 1 5.5230 3.9925 0.8727 33 1 4.3293 1.3892 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260017991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:39 Heat of formation + Delta-G solvation = -28.327596 kcal Electronic energy + Delta-G solvation = -16209.551508 eV Core-core repulsion = 13554.076847 eV Total energy + Delta-G solvation = -2655.474661 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64327 -36.38188 -35.46496 -32.51370 -30.23620 -30.03105 -28.66598 -27.89488 -24.70005 -22.34210 -22.19009 -19.77208 -18.54322 -16.71527 -16.49887 -15.83757 -15.56665 -14.73539 -14.58861 -14.37039 -13.92055 -13.77447 -13.31640 -12.79265 -12.76099 -12.37343 -12.20789 -12.05100 -11.78339 -11.34452 -10.96387 -10.72039 -10.53676 -10.33216 -10.08269 -9.87923 -9.24665 -9.09027 -8.51096 -8.42419 -7.85573 -7.21628 -6.05618 -4.10343 1.41209 1.52116 1.54633 2.39327 3.27993 3.34643 3.36449 3.82801 4.40135 4.55438 4.90672 4.92382 5.08630 5.14871 5.18651 5.30912 5.49390 5.62787 5.81510 5.94716 6.09635 6.26592 6.37269 6.56601 6.73070 6.91528 7.00105 7.51517 7.58263 7.86971 8.00321 8.04581 8.18055 8.32685 8.96326 9.54333 11.05067 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038458 B = 0.004761 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.895506 B = 5880.080629 C = 6004.654751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.131 6.131 3 C -0.086 4.086 4 C -0.141 4.141 5 C -0.077 4.077 6 C -0.074 4.074 7 C 0.131 3.869 8 H 0.079 0.921 9 N -0.842 5.842 10 C 0.005 3.995 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.124 3.876 20 O -0.484 6.484 21 C -0.126 4.126 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.348 0.652 28 H 0.328 0.672 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.385 0.615 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -12.364 8.926 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.109 5.891 3 C -0.198 4.198 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.077 4.077 7 C 0.020 3.980 8 H 0.097 0.903 9 N -0.371 5.371 10 C -0.034 4.034 11 C -0.563 4.563 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.077 3.923 20 O -0.294 6.294 21 C -0.150 4.150 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.148 0.852 27 H 0.161 0.839 28 H 0.140 0.860 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.240 0.760 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.198 -13.862 8.774 17.210 hybrid contribution -0.397 2.598 -0.691 2.718 sum -5.595 -11.264 8.083 14.951 Atomic orbital electron populations 1.23626 0.94931 1.06697 1.05740 1.85294 1.06307 1.04094 1.93409 1.21310 0.96060 0.95779 1.06631 1.21079 0.97768 0.93189 1.04438 1.20757 0.96164 0.94685 0.98094 1.20596 0.92699 0.96949 0.97500 1.20390 0.93346 0.86317 0.97960 0.90294 1.59329 1.05618 1.15528 1.56657 1.19744 0.97554 0.96336 0.89731 1.21133 1.45972 0.96711 0.92480 0.92592 1.25011 0.95431 0.98120 0.95613 1.69975 1.48578 1.36818 0.97498 0.86591 0.79051 0.84878 0.77450 1.20609 1.21266 1.19831 1.18089 0.84007 0.90208 0.99988 1.84933 1.22363 1.89251 1.32814 1.20857 0.94716 0.95378 1.04042 0.89804 0.89727 0.87716 0.86160 0.85189 0.83871 0.86031 0.95577 0.96808 0.92915 0.75968 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.15 101.05 0.92 -0.29 16 2 S -0.13 -1.61 22.56 -107.50 -2.43 -4.04 16 3 C -0.09 -1.28 6.11 -39.06 -0.24 -1.52 16 4 C -0.14 -2.07 9.36 -39.34 -0.37 -2.44 16 5 C -0.08 -1.27 9.26 -39.64 -0.37 -1.63 16 6 C -0.07 -1.38 5.07 -104.42 -0.53 -1.91 16 7 C 0.13 2.68 2.70 -68.86 -0.19 2.49 16 8 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 9 N -0.84 -15.38 8.79 -5.65 -0.05 -15.42 16 10 C 0.00 0.12 4.60 -27.88 -0.13 -0.01 16 11 C -0.52 -14.32 8.55 -34.44 -0.29 -14.62 16 12 H 0.06 1.46 7.14 -52.49 -0.38 1.09 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 C 0.12 2.19 6.67 -39.25 -0.26 1.93 16 20 O -0.48 -8.29 12.63 -19.40 -0.25 -8.53 16 21 C -0.13 -2.01 9.73 -39.22 -0.38 -2.39 16 22 H 0.08 0.66 7.75 -51.92 -0.40 0.26 16 23 H 0.08 0.71 7.75 -51.92 -0.40 0.31 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.12 1.42 5.87 -52.49 -0.31 1.12 16 26 H 0.13 1.97 6.28 -52.48 -0.33 1.65 16 27 H 0.35 6.51 7.90 -39.29 -0.31 6.20 16 28 H 0.33 5.69 7.20 -39.29 -0.28 5.41 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 4.55 9.06 45.56 0.41 4.96 16 33 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -31.64 292.24 -7.75 -39.40 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.22 Total: 12.65 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.93 Total: -18.78 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.69 Total: -41.43 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.25 Total: -8.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.43 Total: -4.04 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.64 -7.75 -39.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.070 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds