Wall clock time and date at job start Mon Mar 30 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00022 * 2 1 4 4 C 1.39036 * 120.05070 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.02807 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.13493 * 359.97294 * 5 4 3 7 7 C 1.50703 * 119.94827 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47343 * 144.99771 * 7 6 5 9 9 N 1.46905 * 109.47075 * 24.99929 * 7 6 5 10 10 C 1.53001 * 109.47072 * 265.00105 * 7 6 5 11 11 C 1.50703 * 109.47072 * 185.00098 * 10 7 6 12 12 H 1.07998 * 120.00155 * 359.97438 * 11 10 7 13 13 C 1.37875 * 119.99814 * 180.02562 * 11 10 7 14 14 N 1.31510 * 120.00394 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99810 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47114 * 89.99550 * 15 13 11 17 17 H 1.48501 * 109.46937 * 209.99561 * 15 13 11 18 18 H 1.48502 * 109.46948 * 329.99298 * 15 13 11 19 19 C 1.38785 * 120.10742 * 0.27921 * 6 5 4 20 20 O 1.35892 * 120.02009 * 179.72582 * 19 6 5 21 21 C 1.38593 * 119.96665 * 359.49146 * 19 6 5 22 22 H 1.09004 * 109.46897 * 300.00041 * 1 2 3 23 23 H 1.09000 * 109.47354 * 59.99830 * 1 2 3 24 24 H 1.08994 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.98526 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.93044 * 179.97438 * 5 4 3 27 27 H 1.00901 * 110.99869 * 176.04968 * 9 7 6 28 28 H 1.00896 * 110.99543 * 300.00090 * 9 7 6 29 29 H 1.08999 * 109.47045 * 304.99692 * 10 7 6 30 30 H 1.09002 * 109.47037 * 64.99916 * 10 7 6 31 31 H 0.96999 * 120.00132 * 180.02562 * 14 13 11 32 32 H 0.96707 * 114.00379 * 89.99579 * 20 19 6 33 33 H 1.07998 * 120.07051 * 180.25942 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1944 2.6660 0.0005 5 6 1.5056 4.0114 0.0011 6 6 2.8266 4.4181 0.0016 7 6 3.1614 5.8875 0.0028 8 1 4.0627 6.0543 0.5926 9 7 2.0462 6.6434 0.5885 10 6 3.3976 6.3579 -1.4338 11 6 3.8517 7.7948 -1.4237 12 1 3.9606 8.3201 -0.4863 13 6 4.1272 8.4391 -2.6111 14 7 3.9941 7.7997 -3.7525 15 14 4.6894 10.2205 -2.5985 16 1 6.1711 10.2714 -2.5144 17 1 4.2411 10.8898 -3.8460 18 1 4.1028 10.9165 -1.4251 19 6 3.8452 3.4755 -0.0042 20 8 5.1434 3.8774 -0.0092 21 6 3.5379 2.1241 0.0001 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 0.1614 2.3509 0.0005 26 1 0.7151 4.7474 0.0011 27 1 2.2721 7.6242 0.6598 28 1 1.1984 6.5051 0.0593 29 1 4.1646 5.7378 -1.8977 30 1 2.4703 6.2738 -2.0007 31 1 4.1883 8.2529 -4.5878 32 1 5.5230 3.9925 0.8727 33 1 4.3293 1.3892 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017991.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:39 Heat of formation + Delta-G solvation = -51.212687 kcal Electronic energy + Delta-G solvation = -16210.543880 eV Core-core repulsion = 13554.076847 eV Total energy + Delta-G solvation = -2656.467033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95080 -37.70414 -37.07742 -34.56252 -31.44769 -31.24453 -30.00295 -29.37991 -26.44283 -24.00590 -23.48406 -21.35065 -19.81979 -18.67332 -17.64576 -17.19114 -16.95380 -16.62012 -15.96638 -15.59736 -15.01025 -14.89453 -14.61511 -14.51754 -14.12517 -13.83779 -13.44273 -13.38059 -13.23231 -13.00886 -12.73516 -12.44945 -12.09983 -11.96857 -11.69014 -11.25606 -10.98942 -10.63756 -10.45418 -9.73847 -9.44635 -8.33021 -8.19883 -6.34666 0.15387 0.30124 0.56596 1.39227 1.40444 1.48853 1.51109 2.38006 2.58062 3.11271 3.33271 3.72752 3.88692 4.03691 4.18452 4.30134 4.32625 4.45398 4.64018 4.71611 4.88037 4.90621 4.94214 5.13250 5.23675 5.38715 5.44894 5.66287 5.74481 5.78693 6.14322 6.36965 6.68364 6.82008 6.87236 7.35423 8.89665 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.038458 B = 0.004761 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.895506 B = 5880.080629 C = 6004.654751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.140 6.140 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.081 4.081 6 C -0.108 4.108 7 C 0.148 3.852 8 H 0.072 0.928 9 N -0.827 5.827 10 C 0.017 3.983 11 C -0.535 4.535 12 H 0.068 0.932 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.257 1.257 19 C 0.113 3.887 20 O -0.504 6.504 21 C -0.137 4.137 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.153 0.847 26 H 0.140 0.860 27 H 0.346 0.654 28 H 0.335 0.665 29 H -0.018 1.018 30 H -0.014 1.014 31 H 0.262 0.738 32 H 0.404 0.596 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 -12.775 10.088 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.101 5.899 3 C -0.197 4.197 4 C -0.163 4.163 5 C -0.101 4.101 6 C -0.111 4.111 7 C 0.037 3.963 8 H 0.090 0.910 9 N -0.355 5.355 10 C -0.022 4.022 11 C -0.573 4.573 12 H 0.086 0.914 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.180 1.180 19 C 0.067 3.933 20 O -0.317 6.317 21 C -0.161 4.161 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.148 0.852 25 H 0.170 0.830 26 H 0.157 0.843 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.001 0.999 30 H 0.005 0.995 31 H 0.071 0.929 32 H 0.263 0.737 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.467 -14.285 9.973 18.584 hybrid contribution -0.061 2.567 -1.042 2.771 sum -6.528 -11.718 8.931 16.115 Atomic orbital electron populations 1.23802 0.91416 1.08659 1.06634 1.85382 1.10152 1.01514 1.92834 1.21646 0.95737 0.97786 1.04561 1.21394 0.99341 0.92232 1.03355 1.20945 0.95460 0.96036 0.97631 1.20516 0.94123 0.95707 1.00802 1.19999 0.93921 0.88189 0.94235 0.91023 1.59315 1.05124 1.15142 1.55942 1.19582 0.94555 0.95344 0.92676 1.21559 1.45237 0.97541 0.92955 0.91429 1.25988 0.95519 1.03013 0.95190 1.70130 1.50055 1.38948 0.98273 0.85431 0.78514 0.79068 0.77921 1.20230 1.21127 1.18036 1.18283 0.83878 0.90970 1.00199 1.84865 1.22552 1.89419 1.34819 1.21010 0.95854 0.94807 1.04426 0.88557 0.89134 0.85240 0.82965 0.84255 0.84093 0.85298 0.99920 0.99550 0.92916 0.73740 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.15 113.37 1.04 -0.81 16 2 S -0.14 -3.10 22.56 -56.49 -1.27 -4.37 16 3 C -0.08 -2.41 6.11 22.61 0.14 -2.27 16 4 C -0.14 -3.82 9.36 22.43 0.21 -3.61 16 5 C -0.08 -2.60 9.26 22.23 0.21 -2.39 16 6 C -0.11 -4.07 5.07 -19.74 -0.10 -4.17 16 7 C 0.15 6.19 2.70 44.17 0.12 6.31 16 8 H 0.07 3.05 7.69 -2.39 -0.02 3.03 16 9 N -0.83 -29.91 8.79 -171.79 -1.51 -31.42 16 10 C 0.02 0.91 4.60 29.85 0.14 1.05 16 11 C -0.54 -29.66 8.55 25.60 0.22 -29.44 16 12 H 0.07 3.51 7.14 -2.91 -0.02 3.49 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 15 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 19 C 0.11 4.08 6.67 22.49 0.15 4.23 16 20 O -0.50 -17.86 12.63 -92.33 -1.17 -19.02 16 21 C -0.14 -4.33 9.73 22.50 0.22 -4.11 16 22 H 0.10 1.12 7.75 -2.39 -0.02 1.10 16 23 H 0.09 1.18 7.75 -2.39 -0.02 1.16 16 24 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.15 3.08 5.87 -2.91 -0.02 3.06 16 26 H 0.14 4.08 6.28 -2.91 -0.02 4.06 16 27 H 0.35 12.75 7.90 -89.69 -0.71 12.04 16 28 H 0.33 11.46 7.20 -89.70 -0.65 10.82 16 29 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.40 9.88 9.06 -74.05 -0.67 9.21 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -69.54 292.24 0.29 -69.25 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.87 Total: 31.64 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 2.80 Total: -34.70 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.23 Total: -88.77 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.17 Total: -19.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.27 Total: -4.37 kcal Total: -69.54 0.29 -69.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017991.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.035 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds