Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38267 * 119.98804 * 2 1 4 4 C 1.38220 * 120.01766 * 180.25277 * 3 2 1 5 5 C 1.50704 * 119.99014 * 179.76750 * 4 3 2 6 6 C 1.38237 * 120.01683 * 359.49620 * 4 3 2 7 7 C 1.50697 * 120.00766 * 180.22755 * 6 4 3 8 8 H 1.09005 * 109.47004 * 348.81083 * 7 6 4 9 9 N 1.46891 * 109.47561 * 228.80995 * 7 6 4 10 10 C 1.52998 * 109.46943 * 108.80640 * 7 6 4 11 11 C 1.50707 * 109.47368 * 185.00215 * 10 7 6 12 12 H 1.07998 * 119.99501 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00007 * 180.02562 * 11 10 7 14 14 N 1.31510 * 120.00251 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99767 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46706 * 89.99804 * 15 13 11 17 17 H 1.48496 * 109.47069 * 210.00053 * 15 13 11 18 18 H 1.48501 * 109.47077 * 330.00188 * 15 13 11 19 19 C 1.38325 * 119.98465 * 0.25161 * 6 4 3 20 20 Cl 1.73606 * 120.01153 * 180.02562 * 19 6 4 21 21 C 1.38187 * 119.99366 * 179.74965 * 2 1 3 22 22 H 1.08998 * 109.46983 * 270.24980 * 1 2 3 23 23 H 1.09000 * 109.46794 * 30.24937 * 1 2 3 24 24 H 1.08996 * 109.46863 * 150.25026 * 1 2 3 25 25 H 1.07997 * 119.99035 * 0.02778 * 3 2 1 26 26 H 1.09000 * 109.47162 * 269.72611 * 5 4 3 27 27 H 1.09006 * 109.46827 * 149.72662 * 5 4 3 28 28 H 1.09004 * 109.47007 * 29.72599 * 5 4 3 29 29 H 1.00904 * 111.00932 * 162.84152 * 9 7 6 30 30 H 1.00903 * 111.00179 * 286.79766 * 9 7 6 31 31 H 1.08995 * 109.47701 * 305.00191 * 10 7 6 32 32 H 1.09004 * 109.47133 * 65.00218 * 10 7 6 33 33 H 0.96998 * 119.99643 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.00757 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1976 0.0000 4 6 3.5804 1.1983 -0.0053 5 6 4.3330 2.5039 -0.0106 6 6 4.2726 0.0017 0.0000 7 6 5.7795 0.0028 -0.0006 8 1 6.1421 1.0103 -0.2048 9 7 6.2695 -0.9137 -1.0387 10 6 6.2903 -0.4556 1.3668 11 6 7.7922 -0.3377 1.4074 12 1 8.3286 0.0280 0.5444 13 6 8.4813 -0.6967 2.5464 14 7 7.8281 -1.1426 3.5971 15 14 10.3430 -0.5513 2.5964 16 1 10.7210 0.7966 3.0921 17 1 10.8961 -1.5864 3.5062 18 1 10.8918 -0.7482 1.2307 19 6 3.5816 -1.1966 0.0052 20 17 4.4502 -2.6997 0.0125 21 6 2.1979 -1.1968 0.0052 22 1 -0.3633 0.0045 1.0276 23 1 -0.3633 0.8878 -0.5177 24 1 -0.3633 -0.8922 -0.5099 25 1 1.6578 2.1326 0.0005 26 1 4.5148 2.8144 -1.0395 27 1 5.2854 2.3764 0.5041 28 1 3.7432 3.2654 0.4999 29 1 7.2385 -0.7319 -1.2538 30 1 6.1342 -1.8755 -0.7653 31 1 5.8556 0.1707 2.1458 32 1 6.0028 -1.4939 1.5327 33 1 8.3131 -1.3955 4.3982 34 1 1.6579 -2.1321 0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -1.685931 kcal Electronic energy + Delta-G solvation = -16601.181657 eV Core-core repulsion = 13944.818559 eV Total energy + Delta-G solvation = -2656.363098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57507 -36.23930 -35.54767 -33.05891 -32.19698 -31.05747 -28.00964 -27.15778 -26.63798 -23.77324 -22.04247 -20.79862 -19.48632 -16.92494 -15.85982 -15.52852 -14.89301 -14.61978 -14.33564 -13.93546 -13.36580 -13.12256 -12.92480 -12.64216 -12.51971 -12.31004 -12.11898 -11.87827 -11.63556 -11.11621 -11.02065 -10.82811 -10.78925 -10.59492 -10.40916 -9.88539 -9.65858 -9.01636 -8.41708 -8.29322 -8.09310 -7.59398 -6.04144 -4.08038 1.53885 1.61311 2.63736 3.28306 3.35173 3.37586 3.90665 4.41224 4.93866 4.99010 5.23488 5.31066 5.34178 5.51849 5.57062 5.61937 5.70466 5.85538 5.91947 5.95083 6.00100 6.21376 6.39404 6.41642 6.59271 6.71088 6.77585 6.98266 7.17488 7.52593 7.67937 7.91853 8.14819 8.30381 8.42006 8.98237 9.56123 11.06544 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.006568 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.281360 B = 4262.290292 C = 4668.594298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.072 4.072 5 C -0.117 4.117 6 C -0.042 4.042 7 C 0.119 3.881 8 H 0.081 0.919 9 N -0.846 5.846 10 C -0.004 4.004 11 C -0.522 4.522 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.014 4.014 20 Cl -0.057 7.057 21 C -0.121 4.121 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.337 0.663 30 H 0.339 0.661 31 H 0.016 0.984 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.798 2.636 -7.208 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.072 4.072 5 C -0.173 4.173 6 C -0.043 4.043 7 C 0.008 3.992 8 H 0.099 0.901 9 N -0.381 5.381 10 C -0.043 4.043 11 C -0.561 4.561 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.040 4.040 20 Cl -0.028 7.028 21 C -0.140 4.140 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.243 2.735 -7.490 14.611 hybrid contribution 1.788 -0.464 1.008 2.104 sum -10.456 2.271 -6.482 12.510 Atomic orbital electron populations 1.20713 0.91078 1.02445 1.02135 1.19645 0.95782 0.92494 1.01320 1.20869 0.93385 0.97372 1.02140 1.19677 0.93321 0.94750 0.99494 1.20858 1.00905 0.93280 1.02301 1.19972 0.97416 0.90557 0.96379 1.20605 0.87060 0.97553 0.94024 0.90146 1.59516 1.24936 1.09276 1.44420 1.19862 0.95901 0.97927 0.90579 1.21126 0.91720 1.43920 0.99297 0.92717 1.24993 0.98291 0.95160 0.95707 1.69974 1.35508 1.43732 1.03651 0.86616 0.85786 0.77771 0.77963 1.20670 1.21263 1.19846 1.20656 0.91708 0.87107 1.04572 1.98297 1.75922 1.31985 1.96553 1.20784 0.91870 0.98273 1.03084 0.91351 0.91701 0.91742 0.86086 0.91211 0.90105 0.91801 0.85108 0.84146 0.96583 0.94910 0.92967 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.09 -1.29 5.88 -104.63 -0.62 -1.90 16 3 C -0.12 -1.72 9.36 -39.58 -0.37 -2.09 16 4 C -0.07 -1.20 5.88 -104.63 -0.62 -1.81 16 5 C -0.12 -1.69 9.27 36.01 0.33 -1.36 16 6 C -0.04 -0.81 4.95 -104.59 -0.52 -1.33 16 7 C 0.12 2.52 2.45 -68.87 -0.17 2.35 16 8 H 0.08 1.67 5.77 -51.93 -0.30 1.37 16 9 N -0.85 -17.11 8.76 -5.66 -0.05 -17.16 16 10 C 0.00 -0.11 4.33 -27.88 -0.12 -0.23 16 11 C -0.52 -14.30 8.72 -34.44 -0.30 -14.60 16 12 H 0.05 1.44 7.26 -52.49 -0.38 1.06 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.01 -0.25 6.15 -39.50 -0.24 -0.49 16 20 Cl -0.06 -1.05 23.12 -51.86 -1.20 -2.25 16 21 C -0.12 -1.90 9.49 -39.55 -0.38 -2.28 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.31 6.31 -51.93 -0.33 0.99 16 28 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.34 6.67 8.36 -39.29 -0.33 6.35 16 30 H 0.34 6.95 5.15 -39.29 -0.20 6.75 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.03 0.89 6.23 -51.93 -0.32 0.56 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 290.14 15.07 4.37 4.37 Total: -1.00 -30.11 290.14 -8.26 -38.37 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.37 Total: 8.97 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -2.73 Total: -22.87 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.69 Total: -42.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.20 Total: -2.25 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.11 -8.26 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.684 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds