Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38267 * 119.98804 * 2 1 4 4 C 1.38220 * 120.01766 * 180.25277 * 3 2 1 5 5 C 1.50704 * 119.99014 * 179.76750 * 4 3 2 6 6 C 1.38237 * 120.01683 * 359.49620 * 4 3 2 7 7 C 1.50697 * 120.00766 * 180.22755 * 6 4 3 8 8 H 1.09005 * 109.47004 * 348.81083 * 7 6 4 9 9 N 1.46891 * 109.47561 * 228.80995 * 7 6 4 10 10 C 1.52998 * 109.46943 * 108.80640 * 7 6 4 11 11 C 1.50707 * 109.47368 * 185.00215 * 10 7 6 12 12 H 1.07998 * 119.99501 * 0.02562 * 11 10 7 13 13 C 1.37875 * 120.00007 * 180.02562 * 11 10 7 14 14 N 1.31510 * 120.00251 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99767 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46706 * 89.99804 * 15 13 11 17 17 H 1.48496 * 109.47069 * 210.00053 * 15 13 11 18 18 H 1.48501 * 109.47077 * 330.00188 * 15 13 11 19 19 C 1.38325 * 119.98465 * 0.25161 * 6 4 3 20 20 Cl 1.73606 * 120.01153 * 180.02562 * 19 6 4 21 21 C 1.38187 * 119.99366 * 179.74965 * 2 1 3 22 22 H 1.08998 * 109.46983 * 270.24980 * 1 2 3 23 23 H 1.09000 * 109.46794 * 30.24937 * 1 2 3 24 24 H 1.08996 * 109.46863 * 150.25026 * 1 2 3 25 25 H 1.07997 * 119.99035 * 0.02778 * 3 2 1 26 26 H 1.09000 * 109.47162 * 269.72611 * 5 4 3 27 27 H 1.09006 * 109.46827 * 149.72662 * 5 4 3 28 28 H 1.09004 * 109.47007 * 29.72599 * 5 4 3 29 29 H 1.00904 * 111.00932 * 162.84152 * 9 7 6 30 30 H 1.00903 * 111.00179 * 286.79766 * 9 7 6 31 31 H 1.08995 * 109.47701 * 305.00191 * 10 7 6 32 32 H 1.09004 * 109.47133 * 65.00218 * 10 7 6 33 33 H 0.96998 * 119.99643 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.00757 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1976 0.0000 4 6 3.5804 1.1983 -0.0053 5 6 4.3330 2.5039 -0.0106 6 6 4.2726 0.0017 0.0000 7 6 5.7795 0.0028 -0.0006 8 1 6.1421 1.0103 -0.2048 9 7 6.2695 -0.9137 -1.0387 10 6 6.2903 -0.4556 1.3668 11 6 7.7922 -0.3377 1.4074 12 1 8.3286 0.0280 0.5444 13 6 8.4813 -0.6967 2.5464 14 7 7.8281 -1.1426 3.5971 15 14 10.3430 -0.5513 2.5964 16 1 10.7210 0.7966 3.0921 17 1 10.8961 -1.5864 3.5062 18 1 10.8918 -0.7482 1.2307 19 6 3.5816 -1.1966 0.0052 20 17 4.4502 -2.6997 0.0125 21 6 2.1979 -1.1968 0.0052 22 1 -0.3633 0.0045 1.0276 23 1 -0.3633 0.8878 -0.5177 24 1 -0.3633 -0.8922 -0.5099 25 1 1.6578 2.1326 0.0005 26 1 4.5148 2.8144 -1.0395 27 1 5.2854 2.3764 0.5041 28 1 3.7432 3.2654 0.4999 29 1 7.2385 -0.7319 -1.2538 30 1 6.1342 -1.8755 -0.7653 31 1 5.8556 0.1707 2.1458 32 1 6.0028 -1.4939 1.5327 33 1 8.3131 -1.3955 4.3982 34 1 1.6579 -2.1321 0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260027302.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -19.733551 kcal Electronic energy + Delta-G solvation = -16601.964261 eV Core-core repulsion = 13944.818559 eV Total energy + Delta-G solvation = -2657.145702 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85734 -37.65452 -37.11365 -34.76072 -33.80057 -32.30228 -29.90943 -28.34947 -27.92874 -25.55734 -23.46084 -22.24133 -20.89151 -18.79104 -17.55047 -16.84863 -16.59612 -16.18191 -15.72361 -15.22481 -14.81350 -14.38049 -14.34381 -14.16963 -13.91903 -13.64212 -13.46418 -13.18027 -13.01405 -12.84590 -12.67678 -12.40664 -12.16033 -12.07165 -11.97208 -11.63113 -11.46645 -10.87156 -10.54888 -9.57876 -9.47816 -9.19128 -8.20447 -6.31963 0.28904 0.36470 1.27053 1.38229 1.38860 1.49671 2.38211 2.67035 3.12593 3.74749 3.86575 3.98473 4.20472 4.29369 4.39109 4.44777 4.65952 4.68633 4.81400 4.85832 4.91140 4.94234 5.04431 5.15729 5.30912 5.35851 5.39593 5.51869 5.58844 5.72808 5.79518 6.00194 6.17991 6.42836 6.74033 6.83853 7.36884 8.90739 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.006568 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.281360 B = 4262.290292 C = 4668.594298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.082 4.082 3 C -0.117 4.117 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.081 4.081 7 C 0.132 3.868 8 H 0.081 0.919 9 N -0.839 5.839 10 C 0.006 3.994 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.262 1.262 19 C -0.035 4.035 20 Cl -0.072 7.072 21 C -0.130 4.130 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.157 0.843 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.337 0.663 30 H 0.338 0.662 31 H -0.020 1.020 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 3.832 -8.146 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.083 4.083 5 C -0.171 4.171 6 C -0.082 4.082 7 C 0.021 3.979 8 H 0.099 0.901 9 N -0.374 5.374 10 C -0.033 4.033 11 C -0.572 4.572 12 H 0.080 0.920 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.787 3.213 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.186 1.186 19 C -0.062 4.062 20 Cl -0.043 7.043 21 C -0.149 4.149 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.175 0.825 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.149 0.851 30 H 0.157 0.843 31 H -0.002 1.002 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.490 3.936 -8.451 16.398 hybrid contribution 2.050 -0.809 1.294 2.556 sum -11.440 3.127 -7.156 13.852 Atomic orbital electron populations 1.20812 0.87780 1.04189 1.03381 1.20181 0.98052 0.91558 0.98498 1.21287 0.92460 0.99159 1.00604 1.20017 0.94715 0.94508 0.99062 1.20870 0.99837 0.93119 1.03248 1.19937 0.96200 0.92208 0.99861 1.20333 0.89007 0.97259 0.91333 0.90143 1.59563 1.24857 1.09151 1.43801 1.19714 0.95185 0.95986 0.92378 1.21525 0.92861 1.43249 0.99516 0.91973 1.25913 1.03443 0.94790 0.95322 1.70119 1.37554 1.45029 1.04368 0.85493 0.79590 0.77844 0.78394 1.19891 1.21179 1.18576 1.20928 0.92918 0.86330 1.05984 1.98278 1.76480 1.32843 1.96712 1.21099 0.90803 1.00081 1.02900 0.90150 0.89572 0.90513 0.82515 0.89698 0.92736 0.89149 0.85146 0.84291 1.00185 0.96970 0.92949 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.08 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.12 -3.04 9.36 22.27 0.21 -2.83 16 4 C -0.08 -2.66 5.88 -19.87 -0.12 -2.78 16 5 C -0.11 -3.17 9.27 71.24 0.66 -2.51 16 6 C -0.08 -3.15 4.95 -19.84 -0.10 -3.25 16 7 C 0.13 5.76 2.45 44.17 0.11 5.86 16 8 H 0.08 3.43 5.77 -2.38 -0.01 3.42 16 9 N -0.84 -34.59 8.76 -171.82 -1.50 -36.09 16 10 C 0.01 0.31 4.33 29.85 0.13 0.44 16 11 C -0.53 -29.85 8.72 25.60 0.22 -29.63 16 12 H 0.06 3.30 7.26 -2.91 -0.02 3.28 16 13 C 0.00 0.19 5.46 84.65 0.46 0.65 16 14 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 15 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 C -0.03 -1.30 6.15 22.32 0.14 -1.16 16 20 Cl -0.07 -2.76 23.12 -2.72 -0.06 -2.82 16 21 C -0.13 -3.92 9.49 22.29 0.21 -3.70 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 24 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.79 6.31 -2.38 -0.02 1.78 16 28 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 29 H 0.34 13.52 8.36 -89.69 -0.75 12.77 16 30 H 0.34 14.23 5.15 -89.69 -0.46 13.77 16 31 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 32 H 0.01 0.69 6.23 -2.39 -0.01 0.67 16 33 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -66.60 290.14 3.18 -63.43 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.09 Total: 27.99 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 2.52 Total: -42.05 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -1.22 Total: -92.87 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 17 Polarization: -2.76 SS G_CDS: -0.06 Total: -2.82 kcal Total: -66.60 3.18 -63.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027302.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.693 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds