Wall clock time and date at job start Mon Mar 30 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50707 * 109.47333 * 2 1 4 4 C 1.38230 * 119.99132 * 89.99712 * 3 2 1 5 5 C 1.38331 * 119.98342 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 120.01097 * 180.02562 * 5 4 3 7 7 C 1.38370 * 119.97795 * 0.02562 * 5 4 3 8 8 C 1.38198 * 119.98245 * 359.97438 * 7 5 4 9 9 C 1.50695 * 119.99297 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47521 * 199.99936 * 9 8 7 11 11 N 1.46908 * 109.47079 * 319.99971 * 9 8 7 12 12 C 1.52996 * 109.47310 * 79.99706 * 9 8 7 13 13 C 1.50702 * 109.47159 * 174.99934 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.38225 * 119.99263 * 270.25911 * 3 2 1 22 22 H 1.08999 * 109.47495 * 299.99755 * 1 2 3 23 23 H 1.08994 * 109.47536 * 59.99851 * 1 2 3 24 24 H 1.08999 * 109.47503 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47302 * 239.99922 * 2 1 3 26 26 H 1.09002 * 109.47813 * 120.00160 * 2 1 3 27 27 H 1.08004 * 120.00812 * 0.02866 * 4 3 2 28 28 H 1.08000 * 120.01153 * 179.97438 * 7 5 4 29 29 H 1.00902 * 111.00072 * 59.99841 * 11 9 8 30 30 H 1.00901 * 110.99845 * 183.95568 * 11 9 8 31 31 H 1.09004 * 109.47066 * 55.00137 * 12 9 8 32 32 H 1.08994 * 109.47405 * 294.99967 * 12 9 8 33 33 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 34 34 H 1.07997 * 119.98667 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0723 1.1972 5 6 2.7233 3.3767 1.1970 6 17 3.0133 4.1953 2.7002 7 6 2.9527 4.0287 -0.0017 8 6 2.7221 3.3763 -1.1979 9 6 2.9714 4.0863 -2.5035 10 1 2.4217 3.5854 -3.3004 11 7 2.5184 5.4798 -2.3973 12 6 4.4678 4.0594 -2.8212 13 6 4.7031 4.6600 -4.1832 14 1 3.8689 5.0248 -4.7640 15 6 5.9842 4.7494 -4.6852 16 7 7.0001 4.3054 -3.9778 17 14 6.2766 5.5008 -6.3702 18 1 4.9788 5.9208 -6.9569 19 1 7.1651 6.6833 -6.2374 20 1 6.9186 4.4962 -7.2556 21 6 2.2576 2.0741 -1.1971 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.0830 1.5630 2.1325 28 1 3.3120 5.0472 -0.0024 29 1 3.0135 5.9662 -1.6649 30 1 2.6153 5.9597 -3.2796 31 1 4.8226 3.0287 -2.8123 32 1 5.0089 4.6363 -2.0713 33 1 7.9013 4.3680 -4.3311 34 1 2.0731 1.5662 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070418.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:00 Heat of formation + Delta-G solvation = -12.757300 kcal Electronic energy + Delta-G solvation = -16068.789008 eV Core-core repulsion = 13411.945820 eV Total energy + Delta-G solvation = -2656.843189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48142 -36.40998 -35.84659 -33.53360 -32.39670 -30.20101 -29.06825 -27.99366 -24.70374 -23.81548 -22.16071 -21.31188 -19.18831 -17.01383 -16.23919 -15.73453 -15.15222 -14.65652 -14.43271 -13.95823 -13.82578 -13.43419 -13.09080 -12.63618 -12.45002 -12.34397 -11.95004 -11.83598 -11.41723 -11.20664 -11.06139 -10.96159 -10.84671 -10.72576 -10.44327 -10.30250 -9.93424 -9.21194 -8.54118 -8.42083 -8.35469 -7.73349 -6.11670 -4.16635 1.47827 1.59280 2.34484 3.23825 3.32202 3.35196 3.91439 4.35934 4.77676 4.93303 5.16930 5.22969 5.31649 5.34336 5.47912 5.48511 5.68719 5.74863 5.82921 5.87741 5.98431 6.13404 6.19094 6.37437 6.49289 6.65125 6.68971 6.96106 7.11876 7.41377 7.53498 7.81703 7.98503 8.16311 8.27907 8.90143 9.48913 10.98970 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022327 B = 0.005425 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.804649 B = 5160.193464 C = 5849.727069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.073 4.073 4 C -0.127 4.127 5 C -0.029 4.029 6 Cl -0.085 7.085 7 C -0.102 4.102 8 C -0.031 4.031 9 C 0.124 3.876 10 H 0.079 0.921 11 N -0.840 5.840 12 C 0.000 4.000 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.112 4.112 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.329 0.671 30 H 0.348 0.652 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -5.269 9.405 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.146 4.146 5 C -0.055 4.055 6 Cl -0.056 7.056 7 C -0.121 4.121 8 C -0.031 4.031 9 C 0.013 3.987 10 H 0.097 0.903 11 N -0.369 5.369 12 C -0.038 4.038 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.130 4.130 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.161 0.839 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.711 -5.523 9.700 15.470 hybrid contribution 1.507 0.737 -0.991 1.949 sum -9.204 -4.786 8.708 13.545 Atomic orbital electron populations 1.21746 0.94791 1.01458 1.02350 1.20512 0.96084 0.92426 1.02911 1.19708 0.99122 0.96089 0.92400 1.20705 1.02527 0.93109 0.98217 1.20825 1.04336 0.93752 0.86579 1.98338 1.94889 1.79333 1.33068 1.20801 1.00771 1.00467 0.90108 1.20117 0.94036 0.93717 0.95278 1.20578 0.98050 0.88845 0.91210 0.90256 1.59274 1.62721 1.03268 1.11606 1.19809 0.88998 0.98093 0.96913 1.21173 0.92680 1.40627 1.01979 0.92396 1.25021 0.96233 0.95376 0.97561 1.69984 0.99103 1.46235 1.37516 0.86524 0.78330 0.78945 0.84140 1.19623 1.21001 1.20962 1.20992 0.99842 0.94550 0.97647 0.92651 0.92350 0.92565 0.90746 0.91140 0.85763 0.85327 0.85917 0.83854 0.96123 0.96352 0.92901 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.15 0.37 -1.03 16 2 C -0.08 -0.89 6.06 -27.88 -0.17 -1.06 16 3 C -0.07 -1.02 5.13 -104.63 -0.54 -1.56 16 4 C -0.13 -1.80 9.49 -39.55 -0.38 -2.17 16 5 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 16 6 Cl -0.09 -1.20 28.96 -51.86 -1.50 -2.70 16 7 C -0.10 -1.76 9.08 -39.55 -0.36 -2.12 16 8 C -0.03 -0.55 4.95 -104.63 -0.52 -1.07 16 9 C 0.12 2.48 2.99 -68.86 -0.21 2.27 16 10 H 0.08 1.60 8.00 -51.93 -0.42 1.18 16 11 N -0.84 -15.46 9.02 -5.65 -0.05 -15.51 16 12 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 16 13 C -0.53 -13.99 8.55 -34.44 -0.29 -14.28 16 14 H 0.06 1.48 7.14 -52.49 -0.37 1.11 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.11 -1.79 9.32 -39.58 -0.37 -2.16 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.13 2.19 6.66 -52.49 -0.35 1.84 16 29 H 0.33 5.85 7.35 -39.29 -0.29 5.56 16 30 H 0.35 6.50 7.90 -39.29 -0.31 6.19 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.13 1.86 8.03 -52.49 -0.42 1.44 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -28.53 302.31 -8.89 -37.41 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.67 Total: 8.08 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.94 Total: -22.43 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.69 Total: -40.86 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.53 -8.89 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070418.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.657 kcal (2) G-P(sol) polarization free energy of solvation -28.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds