Wall clock time and date at job start Mon Mar 30 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46883 * 2 1 4 4 C 1.50689 * 109.47185 * 120.00450 * 2 1 3 5 5 C 1.38237 * 119.99378 * 299.99739 * 4 2 1 6 6 C 1.38336 * 119.98931 * 180.02562 * 5 4 2 7 7 Cl 1.73598 * 120.01220 * 180.02562 * 6 5 4 8 8 C 1.38369 * 119.97086 * 359.97438 * 6 5 4 9 9 C 1.38195 * 119.98816 * 0.02562 * 8 6 5 10 10 C 1.50700 * 119.99304 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47087 * 200.00250 * 10 9 8 12 12 N 1.46905 * 109.47121 * 320.00054 * 10 9 8 13 13 C 1.50698 * 109.47079 * 79.99767 * 10 9 8 14 14 H 1.08003 * 120.00217 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00029 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99980 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00103 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46954 * 90.00163 * 17 15 13 19 19 H 1.48504 * 109.46853 * 210.00258 * 17 15 13 20 20 H 1.48500 * 109.47066 * 330.00055 * 17 15 13 21 21 C 1.38217 * 119.99699 * 120.25430 * 4 2 1 22 22 H 1.08999 * 109.46808 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46671 * 299.99435 * 1 2 3 24 24 H 1.08997 * 109.47494 * 59.99570 * 1 2 3 25 25 H 1.08997 * 109.46671 * 240.00565 * 2 1 3 26 26 H 1.09004 * 109.47072 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47348 * 300.00045 * 3 2 1 28 28 H 1.09000 * 109.47269 * 60.00330 * 3 2 1 29 29 H 1.08004 * 120.01021 * 0.02562 * 5 4 2 30 30 H 1.08004 * 120.00751 * 179.97438 * 8 6 5 31 31 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 32 32 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 33 33 H 0.96999 * 120.00171 * 179.97438 * 16 15 13 34 34 H 1.08005 * 119.98950 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.6984 -0.2381 2.4858 6 6 2.1600 -0.8901 3.6152 7 17 1.7404 -0.2979 5.1922 8 6 2.9555 -2.0151 3.4874 9 6 3.2887 -2.4863 2.2317 10 6 4.1555 -3.7112 2.0923 11 1 4.5996 -3.7306 1.0971 12 7 5.2207 -3.6749 3.1033 13 6 3.3154 -4.9463 2.2918 14 1 2.2594 -4.8537 2.4984 15 6 3.8948 -6.1948 2.2095 16 7 5.1806 -6.3077 1.9575 17 14 2.8534 -7.7259 2.4561 18 1 2.3052 -8.1675 1.1486 19 1 3.6923 -8.8076 3.0320 20 1 1.7350 -7.4197 3.3839 21 6 2.8313 -1.8311 1.1033 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.0772 0.6398 2.5851 30 1 3.3165 -2.5243 4.3687 31 1 4.8342 -3.6564 4.0352 32 1 5.8535 -4.4525 2.9897 33 1 5.5883 -7.1859 1.8999 34 1 3.0959 -2.1972 0.1222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:31 Heat of formation + Delta-G solvation = -10.980467 kcal Electronic energy + Delta-G solvation = -16340.894522 eV Core-core repulsion = 13684.128383 eV Total energy + Delta-G solvation = -2656.766139 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.28429 -36.23404 -35.79291 -33.92265 -31.49397 -29.89159 -28.80694 -27.06396 -26.02037 -23.57119 -22.17960 -21.21293 -18.80598 -16.59255 -16.45336 -15.45844 -15.04727 -14.60199 -14.02509 -13.74686 -13.54189 -13.53355 -12.94499 -12.58666 -12.28165 -12.14189 -11.78524 -11.56550 -11.33457 -11.19537 -11.00486 -10.95514 -10.66988 -10.59895 -10.56166 -10.34807 -10.01740 -9.63149 -8.71499 -8.10660 -8.03792 -7.25071 -6.14717 -4.31833 1.77389 1.92439 2.56481 3.19497 3.26984 3.31056 4.19388 4.34957 4.84844 4.99228 5.08471 5.31004 5.42787 5.56760 5.66865 5.68795 5.75293 5.87898 5.96395 6.05309 6.06047 6.25730 6.32483 6.37966 6.51771 6.60075 6.85630 6.99952 7.04892 7.43599 7.66508 7.69550 8.02511 8.60235 8.86600 9.05471 9.40370 10.82919 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.006596 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.032056 B = 4243.690010 C = 4875.083347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.032 4.032 7 Cl -0.094 7.094 8 C -0.103 4.103 9 C -0.008 4.008 10 C 0.240 3.760 11 H 0.050 0.950 12 N -0.850 5.850 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.117 4.117 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.312 0.688 32 H 0.357 0.643 33 H 0.266 0.734 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 11.421 -1.059 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.200 4.200 4 C -0.072 4.072 5 C -0.152 4.152 6 C -0.058 4.058 7 Cl -0.066 7.066 8 C -0.122 4.122 9 C -0.009 4.009 10 C 0.130 3.870 11 H 0.068 0.932 12 N -0.380 5.380 13 C -0.585 4.585 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.136 4.136 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.121 0.879 32 H 0.173 0.827 33 H 0.076 0.924 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.966 12.032 -1.292 13.492 hybrid contribution -1.012 -1.892 0.616 2.233 sum -6.978 10.140 -0.675 12.327 Atomic orbital electron populations 1.21851 0.94632 1.02097 1.01443 1.20073 0.95708 0.95803 0.95594 1.21851 1.01386 0.95280 1.01465 1.19617 0.97996 0.95966 0.93582 1.20517 1.03016 1.01015 0.90630 1.20860 1.02107 0.97811 0.85032 1.98317 1.92705 1.88229 1.27300 1.20829 0.97773 0.94734 0.98855 1.20449 0.94253 0.95091 0.91142 1.18027 0.87876 0.87167 0.93926 0.93238 1.59544 1.20915 1.52029 1.05500 1.21803 0.95972 0.90929 1.49818 0.92506 1.25010 0.95138 0.99158 0.94209 1.69739 1.10183 1.24478 1.48755 0.86508 0.80235 0.82265 0.78546 1.20466 1.21068 1.19808 1.21042 0.98493 0.95000 0.99026 0.92394 0.92616 0.92732 0.90366 0.92440 0.92736 0.92606 0.86254 0.85478 0.87855 0.82696 0.92367 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.01 37.16 0.33 -1.28 16 2 C -0.05 -0.67 3.09 -91.77 -0.28 -0.96 16 3 C -0.14 -1.57 9.01 37.16 0.33 -1.23 16 4 C -0.07 -1.14 4.78 -104.64 -0.50 -1.64 16 5 C -0.13 -2.12 8.50 -39.55 -0.34 -2.46 16 6 C -0.03 -0.56 6.32 -39.50 -0.25 -0.81 16 7 Cl -0.09 -1.46 28.96 -51.86 -1.50 -2.96 16 8 C -0.10 -2.03 9.07 -39.55 -0.36 -2.39 16 9 C -0.01 -0.18 4.89 -104.63 -0.51 -0.69 16 10 C 0.24 5.83 2.95 -70.01 -0.21 5.62 16 11 H 0.05 1.31 8.00 -51.93 -0.42 0.89 16 12 N -0.85 -19.94 9.02 -6.65 -0.06 -20.00 16 13 C -0.55 -14.38 8.70 -34.44 -0.30 -14.67 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 16 N -0.89 -24.14 11.54 55.43 0.64 -23.50 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.12 -2.19 9.29 -39.58 -0.37 -2.56 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.97 7.88 -51.93 -0.41 0.56 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 29 H 0.12 1.65 7.10 -52.48 -0.37 1.28 16 30 H 0.13 2.53 6.66 -52.48 -0.35 2.18 16 31 H 0.31 6.99 7.34 -39.29 -0.29 6.70 16 32 H 0.36 8.94 7.08 -39.29 -0.28 8.66 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.12 2.18 7.92 -52.48 -0.42 1.76 16 LS Contribution 296.74 15.07 4.47 4.47 Total: -1.00 -26.35 296.74 -8.54 -34.90 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.53 Total: 12.79 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.54 Total: -21.38 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.58 Total: -43.50 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.50 Total: -2.96 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.35 -8.54 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.915 kcal (2) G-P(sol) polarization free energy of solvation -26.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds