Wall clock time and date at job start Mon Mar 30 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46883 * 2 1 4 4 C 1.50689 * 109.47185 * 120.00450 * 2 1 3 5 5 C 1.38237 * 119.99378 * 299.99739 * 4 2 1 6 6 C 1.38336 * 119.98931 * 180.02562 * 5 4 2 7 7 Cl 1.73598 * 120.01220 * 180.02562 * 6 5 4 8 8 C 1.38369 * 119.97086 * 359.97438 * 6 5 4 9 9 C 1.38195 * 119.98816 * 0.02562 * 8 6 5 10 10 C 1.50700 * 119.99304 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47087 * 200.00250 * 10 9 8 12 12 N 1.46905 * 109.47121 * 320.00054 * 10 9 8 13 13 C 1.50698 * 109.47079 * 79.99767 * 10 9 8 14 14 H 1.08003 * 120.00217 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00029 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99980 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00103 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46954 * 90.00163 * 17 15 13 19 19 H 1.48504 * 109.46853 * 210.00258 * 17 15 13 20 20 H 1.48500 * 109.47066 * 330.00055 * 17 15 13 21 21 C 1.38217 * 119.99699 * 120.25430 * 4 2 1 22 22 H 1.08999 * 109.46808 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46671 * 299.99435 * 1 2 3 24 24 H 1.08997 * 109.47494 * 59.99570 * 1 2 3 25 25 H 1.08997 * 109.46671 * 240.00565 * 2 1 3 26 26 H 1.09004 * 109.47072 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47348 * 300.00045 * 3 2 1 28 28 H 1.09000 * 109.47269 * 60.00330 * 3 2 1 29 29 H 1.08004 * 120.01021 * 0.02562 * 5 4 2 30 30 H 1.08004 * 120.00751 * 179.97438 * 8 6 5 31 31 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 32 32 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 33 33 H 0.96999 * 120.00171 * 179.97438 * 16 15 13 34 34 H 1.08005 * 119.98950 * 0.02562 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.6984 -0.2381 2.4858 6 6 2.1600 -0.8901 3.6152 7 17 1.7404 -0.2979 5.1922 8 6 2.9555 -2.0151 3.4874 9 6 3.2887 -2.4863 2.2317 10 6 4.1555 -3.7112 2.0923 11 1 4.5996 -3.7306 1.0971 12 7 5.2207 -3.6749 3.1033 13 6 3.3154 -4.9463 2.2918 14 1 2.2594 -4.8537 2.4984 15 6 3.8948 -6.1948 2.2095 16 7 5.1806 -6.3077 1.9575 17 14 2.8534 -7.7259 2.4561 18 1 2.3052 -8.1675 1.1486 19 1 3.6923 -8.8076 3.0320 20 1 1.7350 -7.4197 3.3839 21 6 2.8313 -1.8311 1.1033 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.0772 0.6398 2.5851 30 1 3.3165 -2.5243 4.3687 31 1 4.8342 -3.6564 4.0352 32 1 5.8535 -4.4525 2.9897 33 1 5.5883 -7.1859 1.8999 34 1 3.0959 -2.1972 0.1222 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082493.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:31 Heat of formation + Delta-G solvation = -24.888106 kcal Electronic energy + Delta-G solvation = -16341.497603 eV Core-core repulsion = 13684.128383 eV Total energy + Delta-G solvation = -2657.369220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67866 -37.52117 -37.31225 -35.46014 -33.35789 -31.36939 -30.25368 -27.98708 -27.91620 -25.14502 -23.58258 -22.66827 -20.18364 -18.58876 -17.91112 -16.90408 -16.67933 -16.22260 -15.53022 -14.99662 -14.88194 -14.83104 -14.50624 -13.97798 -13.77641 -13.35734 -13.13861 -12.97638 -12.95135 -12.74776 -12.57581 -12.30701 -12.11484 -12.03583 -11.84672 -11.72273 -11.55387 -11.25265 -10.73685 -9.55924 -9.49006 -9.19052 -8.15185 -6.41143 0.34243 0.49944 1.20522 1.35385 1.37813 1.47388 2.33914 2.81753 3.02880 3.72120 3.90049 4.17198 4.23756 4.35214 4.37491 4.52051 4.59325 4.70798 4.82302 4.87722 4.95705 5.04525 5.12214 5.21284 5.33215 5.34299 5.38795 5.45972 5.60654 5.68180 5.87026 6.00131 6.09467 6.59778 6.87947 7.07133 7.35055 8.79416 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.006596 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.032056 B = 4243.690010 C = 4875.083347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.139 4.139 4 C -0.059 4.059 5 C -0.123 4.123 6 C -0.034 4.034 7 Cl -0.074 7.074 8 C -0.118 4.118 9 C -0.035 4.035 10 C 0.244 3.756 11 H 0.017 0.983 12 N -0.842 5.842 13 C -0.559 4.559 14 H 0.046 0.954 15 C 0.025 3.975 16 N -0.914 5.914 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.273 1.273 21 C -0.132 4.132 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.149 0.851 30 H 0.117 0.883 31 H 0.317 0.683 32 H 0.346 0.654 33 H 0.269 0.731 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 12.883 -1.172 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.060 4.060 5 C -0.142 4.142 6 C -0.061 4.061 7 Cl -0.045 7.045 8 C -0.137 4.137 9 C -0.036 4.036 10 C 0.134 3.866 11 H 0.035 0.965 12 N -0.371 5.371 13 C -0.599 4.599 14 H 0.064 0.936 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.198 1.198 21 C -0.151 4.151 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.680 13.508 -1.399 15.601 hybrid contribution -0.497 -2.263 0.656 2.408 sum -8.177 11.245 -0.744 13.923 Atomic orbital electron populations 1.21840 0.93159 1.01774 1.02977 1.20181 0.96824 0.96552 0.93741 1.21835 1.00835 0.94016 1.02958 1.19973 0.96111 0.94595 0.95294 1.20863 1.02171 1.01257 0.89873 1.20930 1.01411 0.97132 0.86589 1.98321 1.92411 1.87777 1.25971 1.20729 0.99135 0.96005 0.97860 1.20215 0.95567 0.95035 0.92774 1.17819 0.87970 0.88489 0.92317 0.96511 1.59511 1.20644 1.51205 1.05764 1.21995 0.95645 0.92244 1.50014 0.93599 1.25707 0.96183 1.01710 0.93951 1.69832 1.11281 1.25121 1.49137 0.85577 0.78731 0.79042 0.78417 1.20077 1.20432 1.19816 1.21141 0.99488 0.96193 0.98231 0.93660 0.91945 0.90400 0.90327 0.93354 0.90455 0.91955 0.83290 0.86464 0.87253 0.83903 0.92196 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.01 71.98 0.65 -2.08 16 2 C -0.05 -1.24 3.09 -11.54 -0.04 -1.28 16 3 C -0.14 -2.61 9.01 71.98 0.65 -1.96 16 4 C -0.06 -1.81 4.78 -19.87 -0.10 -1.90 16 5 C -0.12 -3.64 8.50 22.29 0.19 -3.45 16 6 C -0.03 -1.15 6.32 22.32 0.14 -1.01 16 7 Cl -0.07 -2.14 28.96 -2.72 -0.08 -2.22 16 8 C -0.12 -4.71 9.07 22.29 0.20 -4.51 16 9 C -0.03 -1.52 4.89 -19.87 -0.10 -1.62 16 10 C 0.24 12.35 2.95 43.42 0.13 12.48 16 11 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 12 N -0.84 -40.95 9.02 -174.94 -1.58 -42.53 16 13 C -0.56 -30.31 8.70 25.60 0.22 -30.08 16 14 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 15 C 0.03 1.34 5.38 84.65 0.46 1.80 16 16 N -0.91 -50.41 11.54 21.45 0.25 -50.16 16 17 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C -0.13 -5.00 9.29 22.27 0.21 -4.79 16 22 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.13 7.39 -2.39 -0.02 1.11 16 24 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.80 7.88 -2.39 -0.02 1.78 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.09 7.39 -2.39 -0.02 1.07 16 29 H 0.15 3.53 7.10 -2.91 -0.02 3.51 16 30 H 0.12 4.78 6.66 -2.91 -0.02 4.76 16 31 H 0.32 14.70 7.34 -89.69 -0.66 14.04 16 32 H 0.35 17.98 7.08 -89.70 -0.63 17.35 16 33 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.12 4.42 7.92 -2.91 -0.02 4.40 16 Total: -1.00 -56.82 296.74 3.05 -53.77 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: -0.18 Total: 34.70 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 2.61 Total: -38.40 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -1.33 Total: -92.69 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -56.82 3.05 -53.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082493.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -56.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds