Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38258 * 119.99198 * 2 1 4 4 C 1.38223 * 120.02478 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99163 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.01052 * 0.02562 * 4 3 2 7 7 C 1.50701 * 120.00283 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.47263 * 353.91001 * 7 6 4 9 9 C 1.50701 * 109.46995 * 233.91173 * 7 6 4 10 10 H 1.08001 * 120.00189 * 265.40182 * 9 7 6 11 11 C 1.37879 * 120.00244 * 85.40464 * 9 7 6 12 12 N 1.31517 * 119.99629 * 4.60042 * 11 9 7 13 13 Si 1.86795 * 120.00357 * 184.59886 * 11 9 7 14 14 H 1.48498 * 109.47265 * 179.97438 * 13 11 9 15 15 H 1.48490 * 109.47324 * 300.00299 * 13 11 9 16 16 H 1.48503 * 109.46631 * 60.00209 * 13 11 9 17 17 C 1.53004 * 109.47199 * 113.91250 * 7 6 4 18 18 N 1.46897 * 109.46948 * 185.59147 * 17 7 6 19 19 C 1.38329 * 119.99107 * 0.29162 * 6 4 3 20 20 Cl 1.73596 * 120.01509 * 179.70553 * 19 6 4 21 21 C 1.38194 * 119.99147 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47266 * 89.99516 * 1 2 3 23 23 H 1.09005 * 109.46945 * 210.00301 * 1 2 3 24 24 H 1.09001 * 109.46825 * 329.99673 * 1 2 3 25 25 H 1.08004 * 119.98721 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.47150 * 264.23978 * 5 4 3 27 27 H 1.08994 * 109.47014 * 24.24139 * 5 4 3 28 28 H 1.09006 * 109.46679 * 144.24346 * 5 4 3 29 29 H 0.97005 * 120.00501 * 356.40835 * 12 11 9 30 30 H 1.08999 * 109.46750 * 305.59294 * 17 7 6 31 31 H 1.09001 * 109.47008 * 65.59142 * 17 7 6 32 32 H 1.00902 * 110.99928 * 183.00706 * 18 17 7 33 33 H 1.00902 * 111.00355 * 306.95510 * 18 17 7 34 34 H 1.07997 * 120.00710 * 0.04580 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 0.0005 5 6 4.3330 2.5039 0.0011 6 6 4.2725 0.0016 0.0005 7 6 5.7795 0.0027 0.0017 8 1 6.1422 1.0249 -0.1066 9 6 6.2833 -0.8334 -1.1465 10 1 6.5346 -1.8719 -0.9889 11 6 6.4235 -0.2726 -2.3982 12 7 6.2045 1.0127 -2.5712 13 14 6.9244 -1.3381 -3.8484 14 1 7.0041 -0.5019 -5.0729 15 1 8.2504 -1.9496 -3.5787 16 1 5.9160 -2.4102 -4.0464 17 6 6.2889 -0.5823 1.3205 18 7 7.7515 -0.4588 1.3784 19 6 3.5816 -1.1968 -0.0061 20 17 4.4501 -2.6998 -0.0138 21 6 2.1978 -1.1969 0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6578 2.1326 -0.0004 26 1 4.6042 2.7674 -1.0212 27 1 3.7024 3.2865 0.4230 28 1 5.2367 2.4020 0.6020 29 1 5.8941 1.5559 -1.8299 30 1 5.8451 -0.0387 2.1545 31 1 6.0103 -1.6342 1.3831 32 1 8.1172 -0.8821 2.2181 33 1 8.1809 -0.8566 0.5565 34 1 1.6578 -2.1322 0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107316.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = -19.623915 kcal Electronic energy + Delta-G solvation = -17128.216952 eV Core-core repulsion = 14471.076005 eV Total energy + Delta-G solvation = -2657.140947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73107 -37.40980 -37.01650 -34.39654 -33.99702 -32.56337 -30.08406 -28.14835 -26.65320 -25.71058 -23.31346 -22.30805 -20.96289 -18.83933 -17.35116 -17.02883 -16.23302 -15.84184 -15.57704 -15.31457 -15.05346 -14.52648 -14.20793 -14.14418 -13.86396 -13.49318 -13.39157 -13.23539 -12.93868 -12.64713 -12.62539 -12.12950 -11.98510 -11.87909 -11.74793 -11.60689 -11.18225 -10.64353 -10.25017 -9.43185 -9.34693 -9.05233 -8.39012 -6.07644 0.39486 0.51958 1.51093 1.53409 1.60045 1.76775 2.61794 2.80232 3.34596 3.91915 3.94903 4.01403 4.26800 4.38404 4.43084 4.50476 4.65561 4.68983 4.76470 4.80598 4.88739 4.95918 5.04855 5.06450 5.22016 5.31804 5.40352 5.59907 5.67069 5.83180 6.10480 6.27249 6.42014 6.46719 6.77792 6.91574 7.67017 9.01910 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.018007 B = 0.009595 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.540121 B = 2917.424214 C = 2940.986915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.097 4.097 3 C -0.124 4.124 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.065 4.065 7 C 0.058 3.942 8 H 0.033 0.967 9 C -0.564 4.564 10 H 0.053 0.947 11 C -0.022 4.022 12 N -0.946 5.946 13 Si 1.092 2.908 14 H -0.292 1.292 15 H -0.272 1.272 16 H -0.282 1.282 17 C 0.081 3.919 18 N -0.849 5.849 19 C -0.034 4.034 20 Cl -0.074 7.074 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.271 0.729 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.338 0.662 33 H 0.345 0.655 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 -2.473 6.526 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.100 4.100 5 C -0.159 4.159 6 C -0.067 4.067 7 C 0.039 3.961 8 H 0.051 0.949 9 C -0.602 4.602 10 H 0.071 0.929 11 C -0.221 4.221 12 N -0.585 5.585 13 Si 0.917 3.083 14 H -0.218 1.218 15 H -0.197 1.197 16 H -0.208 1.208 17 C -0.050 4.050 18 N -0.379 5.379 19 C -0.060 4.060 20 Cl -0.045 7.045 21 C -0.152 4.152 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.100 0.900 25 H 0.163 0.837 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.619 -1.785 4.929 10.088 hybrid contribution 0.044 -1.210 1.345 1.809 sum -8.575 -2.994 6.273 11.039 Atomic orbital electron populations 1.20750 0.87995 1.03937 1.03018 1.20070 0.97860 0.91591 1.00225 1.21207 0.92687 0.98888 1.01435 1.20008 0.94555 0.94837 1.00602 1.20730 0.99695 0.93852 1.01637 1.20498 0.98743 0.91274 0.96194 1.18034 0.86736 0.97698 0.93673 0.94887 1.22023 1.45382 0.97973 0.94822 0.92867 1.26633 0.95230 0.97671 1.02607 1.70842 1.44728 1.06324 1.36597 0.83231 0.77031 0.74093 0.73897 1.21789 1.19710 1.20808 1.21687 0.88499 0.98186 0.96578 1.58655 1.05380 1.66264 1.07594 1.20843 0.92297 0.86928 1.05938 1.98272 1.77583 1.31947 1.96703 1.21078 0.91225 0.99545 1.03384 0.90632 0.90411 0.89963 0.83691 0.92674 0.89296 0.92596 0.91685 0.94172 0.95307 0.85038 0.84157 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 10.01 71.24 0.71 -1.39 16 2 C -0.10 -3.01 5.88 -19.87 -0.12 -3.12 16 3 C -0.12 -4.15 9.33 22.27 0.21 -3.94 16 4 C -0.10 -4.02 5.88 -19.87 -0.12 -4.13 16 5 C -0.10 -3.87 8.60 71.24 0.61 -3.26 16 6 C -0.07 -2.93 4.78 -19.84 -0.09 -3.02 16 7 C 0.06 2.76 1.53 -12.28 -0.02 2.74 16 8 H 0.03 1.76 4.32 -2.38 -0.01 1.75 16 9 C -0.56 -29.43 5.52 25.60 0.14 -29.29 16 10 H 0.05 2.76 6.52 -2.91 -0.02 2.75 16 11 C -0.02 -1.20 5.45 84.65 0.46 -0.74 16 12 N -0.95 -56.00 13.63 21.45 0.29 -55.71 16 13 Si 1.09 50.87 29.91 68.60 2.05 52.92 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 C 0.08 3.45 6.00 86.31 0.52 3.97 16 18 N -0.85 -33.42 9.64 -186.72 -1.80 -35.22 16 19 C -0.03 -1.40 6.04 22.32 0.13 -1.26 16 20 Cl -0.07 -3.00 23.23 -2.72 -0.06 -3.06 16 21 C -0.13 -4.67 9.49 22.29 0.21 -4.45 16 22 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.08 1.39 8.09 -2.38 -0.02 1.37 16 24 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 25 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 26 H 0.05 2.33 6.78 -2.39 -0.02 2.31 16 27 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 28 H 0.06 2.23 6.55 -2.38 -0.02 2.22 16 29 H 0.27 15.67 4.58 -92.70 -0.42 15.24 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 1.21 5.75 -2.39 -0.01 1.20 16 32 H 0.34 10.89 9.08 -89.69 -0.81 10.08 16 33 H 0.34 14.43 8.02 -89.69 -0.72 13.71 16 34 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.57 284.46 3.08 -59.49 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -0.06 Total: 29.47 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 2.65 Total: -47.90 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -1.51 Total: -90.93 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.05 Total: 52.92 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.06 Total: -3.06 kcal Total: -62.57 3.08 -59.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107316.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.866 kcal (2) G-P(sol) polarization free energy of solvation -62.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds