Wall clock time and date at job start Mon Mar 30 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36015 * 116.99667 * 2 1 4 4 C 1.39407 * 120.08324 * 269.72097 * 3 2 1 5 5 S 1.76203 * 120.09533 * 0.02562 * 4 3 2 6 6 C 1.81398 * 103.00077 * 179.97438 * 5 4 3 7 7 C 1.38751 * 119.80936 * 179.75093 * 4 3 2 8 8 C 1.38240 * 119.97642 * 0.52803 * 7 4 3 9 9 C 1.38233 * 120.16471 * 359.72956 * 8 7 4 10 10 C 1.38346 * 120.18806 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.98653 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.46778 * 144.98298 * 11 10 9 13 13 N 1.46897 * 109.46962 * 24.98261 * 11 10 9 14 14 C 1.50701 * 109.47233 * 264.97657 * 11 10 9 15 15 H 1.08001 * 119.99667 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00164 * 179.97438 * 14 11 10 17 17 N 1.31513 * 119.99820 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99950 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.46881 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46717 * 120.00243 * 18 16 14 21 21 H 1.48493 * 109.46892 * 240.00015 * 18 16 14 22 22 H 1.08999 * 109.47144 * 59.99823 * 1 2 3 23 23 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47043 * 300.00225 * 1 2 3 25 25 H 1.08997 * 109.47140 * 180.02562 * 6 5 4 26 26 H 1.08998 * 109.46738 * 300.00128 * 6 5 4 27 27 H 1.08997 * 109.46965 * 59.99954 * 6 5 4 28 28 H 1.08005 * 120.01262 * 180.27765 * 7 4 3 29 29 H 1.08000 * 119.92446 * 179.74107 * 8 7 4 30 30 H 1.07994 * 119.90856 * 180.02562 * 9 8 7 31 31 H 1.00906 * 110.99555 * 176.05052 * 13 11 10 32 32 H 1.00898 * 110.99574 * 299.99578 * 13 11 10 33 33 H 0.96996 * 120.00006 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 2.3689 1.8319 -1.2063 5 16 1.9771 1.0481 -2.7350 6 6 2.5860 2.2311 -3.9680 7 6 2.9940 3.0706 -1.1997 8 6 3.3050 3.6810 0.0011 9 6 2.9896 3.0629 1.1966 10 6 2.3617 1.8301 1.1980 11 6 2.0195 1.1606 2.5040 12 1 1.0807 0.6167 2.3984 13 7 1.8804 2.1783 3.5542 14 6 3.1177 0.1989 2.8785 15 1 3.9777 0.0844 2.2353 16 6 3.0251 -0.5338 4.0428 17 7 1.9781 -0.3939 4.8262 18 14 4.3868 -1.7253 4.5073 19 1 5.4456 -1.6969 3.4665 20 1 4.9676 -1.3276 5.8148 21 1 3.8296 -3.0979 4.6100 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.3934 1.8444 -4.9686 26 1 2.0720 3.1840 -3.8419 27 1 3.6579 2.3760 -3.8341 28 1 3.2413 3.5559 -2.1323 29 1 3.7953 4.6432 0.0052 30 1 3.2341 3.5436 2.1323 31 1 1.5881 1.7612 4.4253 32 1 2.7382 2.6965 3.6714 33 1 1.9127 -0.9097 5.6451 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260203823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:15 Heat of formation + Delta-G solvation = -31.102364 kcal Electronic energy + Delta-G solvation = -16766.261955 eV Core-core repulsion = 14110.666971 eV Total energy + Delta-G solvation = -2655.594984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89988 -38.14668 -36.60561 -33.64419 -31.35886 -31.05651 -29.56840 -28.08381 -27.62491 -24.87926 -23.23937 -21.81378 -18.90698 -18.61666 -17.76182 -17.41801 -16.60965 -16.44265 -16.12084 -15.70668 -14.88283 -14.77848 -14.64121 -14.49260 -14.15569 -13.75900 -13.48469 -13.15044 -13.08459 -12.86308 -12.76967 -12.52781 -12.33618 -11.96778 -11.55063 -11.10178 -10.79228 -10.71712 -10.49423 -9.51717 -9.18671 -8.27539 -8.13013 -6.36399 0.25282 0.44216 0.62523 1.33221 1.36413 1.47939 1.60061 2.35246 2.63359 3.04232 3.08335 3.93610 4.18812 4.30620 4.31847 4.35570 4.41017 4.46193 4.57776 4.62696 4.67997 4.81011 4.89485 4.92631 5.26810 5.32501 5.55597 5.65148 5.85109 5.91781 6.05800 6.62770 6.67941 6.89112 7.09429 7.37774 8.82151 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.026427 B = 0.006939 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.257420 B = 4033.935630 C = 4294.608550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.343 6.343 3 C 0.082 3.918 4 C -0.117 4.117 5 S -0.144 6.144 6 C -0.137 4.137 7 C -0.138 4.138 8 C -0.102 4.102 9 C -0.116 4.116 10 C -0.065 4.065 11 C 0.253 3.747 12 H 0.016 0.984 13 N -0.841 5.841 14 C -0.546 4.546 15 H 0.036 0.964 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.956 3.044 19 H -0.277 1.277 20 H -0.272 1.272 21 H -0.280 1.280 22 H 0.058 0.942 23 H 0.104 0.896 24 H 0.029 0.971 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.346 0.654 32 H 0.320 0.680 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 7.486 -13.886 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.260 6.260 3 C 0.033 3.967 4 C -0.230 4.230 5 S 0.097 5.903 6 C -0.305 4.305 7 C -0.161 4.161 8 C -0.122 4.122 9 C -0.137 4.137 10 C -0.067 4.067 11 C 0.142 3.858 12 H 0.034 0.966 13 N -0.370 5.370 14 C -0.586 4.586 15 H 0.054 0.946 16 C -0.176 4.176 17 N -0.555 5.555 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.205 1.205 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.048 0.952 25 H 0.146 0.854 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.149 0.851 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.412 6.496 -14.538 15.929 hybrid contribution 1.645 -0.269 1.524 2.259 sum 1.233 6.227 -13.014 14.480 Atomic orbital electron populations 1.22956 0.78692 1.03749 1.00066 1.86046 1.20576 1.25187 1.94206 1.18210 1.00240 0.87141 0.91109 1.22171 1.05889 0.98815 0.96134 1.85587 1.76879 1.31521 0.96315 1.23794 1.05182 1.01542 0.99951 1.21294 1.01271 0.93493 1.00062 1.21391 0.99043 1.00805 0.90941 1.21118 0.98848 0.94273 0.99463 1.20661 0.96588 0.94500 0.94968 1.17588 0.94257 0.88102 0.85814 0.96650 1.59550 1.35735 1.28863 1.12881 1.21888 1.05944 1.24474 1.06253 0.94554 1.25658 0.97858 0.97831 0.96237 1.69828 1.29439 1.42588 1.13678 0.85544 0.79380 0.78917 0.77991 1.20207 1.19754 1.20542 0.92376 0.87777 0.95189 0.85434 0.88592 0.88942 0.82507 0.82149 0.85129 0.83931 0.86993 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 10.80 113.37 1.22 2.71 16 2 O -0.34 -15.63 9.06 -93.72 -0.85 -16.48 16 3 C 0.08 3.59 5.70 22.60 0.13 3.72 16 4 C -0.12 -4.17 6.12 22.67 0.14 -4.03 16 5 S -0.14 -4.20 22.05 -56.49 -1.25 -5.45 16 6 C -0.14 -2.29 9.15 113.37 1.04 -1.25 16 7 C -0.14 -4.00 9.36 22.39 0.21 -3.79 16 8 C -0.10 -3.05 10.04 22.27 0.22 -2.83 16 9 C -0.12 -4.45 9.27 22.29 0.21 -4.25 16 10 C -0.06 -2.97 5.00 -19.79 -0.10 -3.06 16 11 C 0.25 13.30 2.67 43.42 0.12 13.41 16 12 H 0.02 0.92 6.41 -2.38 -0.02 0.91 16 13 N -0.84 -40.98 8.79 -174.95 -1.54 -42.51 16 14 C -0.55 -31.16 8.71 25.60 0.22 -30.94 16 15 H 0.04 2.16 7.74 -2.91 -0.02 2.14 16 16 C 0.02 1.34 5.38 84.65 0.46 1.79 16 17 N -0.92 -51.83 11.54 21.45 0.25 -51.58 16 18 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 24 H 0.03 1.19 7.17 -2.39 -0.02 1.18 16 25 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 1.36 7.74 -2.39 -0.02 1.34 16 27 H 0.09 1.40 7.76 -2.39 -0.02 1.38 16 28 H 0.16 3.23 5.88 -2.91 -0.02 3.21 16 29 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.13 4.77 6.28 -2.91 -0.02 4.75 16 31 H 0.35 18.11 7.08 -89.69 -0.63 17.48 16 32 H 0.32 14.46 7.20 -89.70 -0.65 13.82 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.22 288.52 2.37 -63.86 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.14 Total: 33.94 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 3.86 Total: -28.52 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -1.29 Total: -94.09 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.85 Total: -16.48 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -1.25 Total: -5.45 kcal Total: -66.22 2.37 -63.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.754 kcal (2) G-P(sol) polarization free energy of solvation -66.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds