Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38231 * 119.99000 * 2 1 4 4 C 1.38334 * 119.98423 * 180.02562 * 3 2 1 5 5 Cl 1.73601 * 120.01321 * 179.97438 * 4 3 2 6 6 C 1.38374 * 119.97021 * 359.73241 * 4 3 2 7 7 C 1.38194 * 119.99144 * 0.54168 * 6 4 3 8 8 C 1.50697 * 119.99368 * 179.73043 * 7 6 4 9 9 H 1.09008 * 109.46681 * 179.72493 * 8 7 6 10 10 C 1.52993 * 109.47209 * 299.72445 * 8 7 6 11 11 N 1.46905 * 109.47039 * 185.00333 * 10 8 7 12 12 C 1.52997 * 109.46992 * 59.73077 * 8 7 6 13 13 C 1.50709 * 109.46936 * 174.99781 * 12 8 7 14 14 H 1.07994 * 119.99755 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99797 * 179.97438 * 13 12 8 16 16 N 1.31505 * 120.00451 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99559 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47104 * 60.00173 * 17 15 13 19 19 H 1.48501 * 109.46848 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47099 * 300.00188 * 17 15 13 21 21 C 1.38219 * 119.99244 * 180.02562 * 2 1 3 22 22 H 1.09007 * 109.47017 * 269.97182 * 1 2 3 23 23 H 1.08994 * 109.47478 * 29.97745 * 1 2 3 24 24 H 1.08997 * 109.47158 * 149.97883 * 1 2 3 25 25 H 1.08000 * 120.01285 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.00631 * 180.26839 * 6 4 3 27 27 H 1.09001 * 109.47393 * 65.00614 * 10 8 7 28 28 H 1.08998 * 109.47408 * 305.00260 * 10 8 7 29 29 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 30 30 H 1.00896 * 110.99543 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.46691 * 294.99014 * 12 8 7 32 32 H 1.08993 * 109.47449 * 54.99918 * 12 8 7 33 33 H 0.97002 * 120.00322 * 179.97438 * 16 15 13 34 34 H 1.08003 * 119.98699 * 359.95781 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 -0.0005 5 17 4.4498 2.7002 -0.0012 6 6 4.2725 -0.0017 0.0045 7 6 3.5806 -1.1980 -0.0012 8 6 4.3333 -2.5035 -0.0018 9 1 3.6243 -3.3315 -0.0017 10 6 5.2123 -2.5848 -1.2514 11 7 5.8536 -3.9050 -1.3139 12 6 5.2132 -2.5854 1.2471 13 6 5.8712 -3.9398 1.3100 14 1 5.6805 -4.6692 0.5367 15 6 6.7167 -4.2476 2.3546 16 7 6.9487 -3.3596 3.2965 17 14 7.5318 -5.9266 2.4329 18 1 8.3687 -6.1275 1.2229 19 1 8.3860 -6.0061 3.6450 20 1 6.4880 -6.9811 2.4934 21 6 2.1980 -1.1971 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6580 2.1326 0.0004 26 1 5.3525 -0.0025 0.0085 27 1 5.9782 -1.8106 -1.2079 28 1 4.5968 -2.4376 -2.1388 29 1 5.1656 -4.6427 -1.2901 30 1 6.4404 -3.9836 -2.1309 31 1 5.9791 -1.8111 1.2032 32 1 4.5985 -2.4386 2.1350 33 1 7.5432 -3.5763 4.0316 34 1 1.6576 -2.1322 -0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260239259.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = 4.675351 kcal Electronic energy + Delta-G solvation = -16278.653887 eV Core-core repulsion = 13622.566635 eV Total energy + Delta-G solvation = -2656.087252 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.48173 -36.49934 -35.90523 -32.58764 -32.33365 -31.20882 -28.81475 -26.86724 -25.84884 -22.69797 -21.96261 -21.71782 -18.95418 -16.81147 -16.04362 -15.52035 -15.07458 -14.52885 -14.40928 -13.93764 -13.80261 -13.39793 -12.98490 -12.72033 -12.46364 -12.30900 -12.09188 -11.57344 -11.33192 -11.15109 -11.03590 -10.79207 -10.66592 -10.40820 -10.31794 -9.80468 -9.44948 -8.93787 -8.38805 -8.27934 -8.14334 -7.47807 -5.74927 -3.68860 1.43102 1.53996 2.33298 3.47439 3.51788 3.54754 3.86804 4.66557 4.87433 4.93129 5.23134 5.28581 5.44619 5.57867 5.60120 5.62506 5.65386 5.73632 5.86554 5.93887 6.06907 6.13981 6.31943 6.48676 6.54815 6.65931 6.92039 7.02061 7.15383 7.80853 7.86653 7.89582 8.12345 8.31592 8.67745 9.37341 9.90033 11.38095 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.005707 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.510847 B = 4904.758861 C = 5263.829123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.027 4.027 5 Cl -0.083 7.083 6 C -0.106 4.106 7 C -0.038 4.038 8 C -0.052 4.052 9 H 0.068 0.932 10 C 0.090 3.910 11 N -0.813 5.813 12 C 0.040 3.960 13 C -0.478 4.478 14 H 0.083 0.917 15 C 0.045 3.955 16 N -0.911 5.911 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.283 1.283 21 C -0.119 4.119 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.134 0.866 27 H 0.065 0.935 28 H 0.002 0.998 29 H 0.334 0.666 30 H 0.320 0.680 31 H 0.016 0.984 32 H 0.011 0.989 33 H 0.254 0.746 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 7.299 -9.414 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.054 4.054 5 Cl -0.054 7.054 6 C -0.125 4.125 7 C -0.039 4.039 8 C -0.070 4.070 9 H 0.086 0.914 10 C -0.041 4.041 11 N -0.342 5.342 12 C 0.003 3.997 13 C -0.517 4.517 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.553 5.553 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.209 1.209 21 C -0.137 4.137 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.143 0.857 26 H 0.152 0.848 27 H 0.083 0.917 28 H 0.020 0.980 29 H 0.147 0.853 30 H 0.132 0.868 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.064 0.936 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.936 7.661 -8.576 15.198 hybrid contribution 0.182 -0.758 -0.628 1.000 sum -9.754 6.904 -9.204 15.084 Atomic orbital electron populations 1.20753 0.90962 1.02562 1.02394 1.19755 0.95935 0.92488 0.99750 1.20734 0.91824 0.98235 1.04049 1.20872 0.92234 0.86758 1.05522 1.98344 1.77091 1.32913 1.97064 1.20996 1.00927 0.90049 1.00510 1.20214 0.93315 0.95672 0.94670 1.20492 0.96770 0.90922 0.98850 0.91400 1.21605 0.95845 0.92328 0.94345 1.58990 1.26398 1.03139 1.45686 1.19100 0.93192 0.98187 0.89185 1.21516 1.24607 0.99147 1.06455 0.89951 1.25001 0.97549 0.96580 0.96198 1.69976 1.38334 1.34401 1.12582 0.86684 0.79329 0.85132 0.76794 1.20476 1.22113 1.20894 1.21080 0.93768 0.97518 1.01350 0.91089 0.91724 0.91460 0.85698 0.84790 0.91684 0.98027 0.85276 0.86794 0.96566 0.97056 0.93593 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.08 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.13 -1.80 9.49 -39.55 -0.38 -2.17 16 4 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 5 Cl -0.08 -1.19 28.96 -51.86 -1.50 -2.69 16 6 C -0.11 -1.84 8.60 -39.55 -0.34 -2.18 16 7 C -0.04 -0.66 4.78 -104.63 -0.50 -1.16 16 8 C -0.05 -1.00 2.29 -91.78 -0.21 -1.21 16 9 H 0.07 1.29 7.88 -51.92 -0.41 0.88 16 10 C 0.09 1.59 5.90 -3.82 -0.02 1.56 16 11 N -0.81 -14.46 6.70 -10.37 -0.07 -14.53 16 12 C 0.04 1.01 4.18 -27.88 -0.12 0.89 16 13 C -0.48 -12.97 7.94 -34.44 -0.27 -13.25 16 14 H 0.08 2.10 5.12 -52.49 -0.27 1.83 16 15 C 0.04 1.29 5.46 -17.82 -0.10 1.19 16 16 N -0.91 -27.97 13.29 55.43 0.74 -27.23 16 17 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.12 -1.81 9.33 -39.58 -0.37 -2.18 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 24 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.13 2.43 7.22 -52.49 -0.38 2.05 16 27 H 0.06 1.21 7.58 -51.93 -0.39 0.82 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.33 5.52 8.27 -39.29 -0.33 5.19 16 30 H 0.32 4.84 9.08 -39.29 -0.36 4.48 16 31 H 0.02 0.44 7.55 -51.93 -0.39 0.05 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 34 H 0.12 1.69 7.95 -52.48 -0.42 1.27 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -30.74 297.60 -8.79 -39.52 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.61 Total: 4.84 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -2.81 Total: -21.58 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.67 Total: -41.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.74 -8.79 -39.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260239259.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.198 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds