Wall clock time and date at job start Mon Mar 30 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47057 * 2 1 4 4 C 1.50704 * 109.47192 * 119.99696 * 2 1 3 5 5 C 1.38237 * 120.00550 * 299.98063 * 4 2 1 6 6 C 1.38219 * 120.01211 * 179.76533 * 5 4 2 7 7 C 1.38274 * 120.02435 * 0.50846 * 6 5 4 8 8 C 1.50697 * 119.99197 * 179.76898 * 7 6 5 9 9 H 1.09001 * 109.46613 * 199.72391 * 8 7 6 10 10 N 1.46906 * 109.46982 * 319.72177 * 8 7 6 11 11 C 1.50698 * 109.47576 * 79.72424 * 8 7 6 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 8 15 15 Si 1.86790 * 120.00086 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.47385 * 59.99525 * 15 13 11 17 17 H 1.48500 * 109.47279 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47348 * 299.99599 * 15 13 11 19 19 C 1.38195 * 120.00979 * 359.48834 * 7 6 5 20 20 C 1.38329 * 120.00565 * 119.99624 * 4 2 1 21 21 Cl 1.73606 * 120.01187 * 0.02562 * 20 4 2 22 22 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46880 * 300.00438 * 1 2 3 24 24 H 1.09001 * 109.47069 * 60.00004 * 1 2 3 25 25 H 1.08996 * 109.47169 * 239.99695 * 2 1 3 26 26 H 1.09003 * 109.46893 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46714 * 299.99742 * 3 2 1 28 28 H 1.08999 * 109.46926 * 60.00016 * 3 2 1 29 29 H 1.07994 * 119.99359 * 0.02562 * 5 4 2 30 30 H 1.07999 * 119.99401 * 180.27470 * 6 5 4 31 31 H 1.00896 * 111.00309 * 60.00059 * 10 8 7 32 32 H 1.00902 * 110.99923 * 183.96223 * 10 8 7 33 33 H 0.97005 * 119.99198 * 180.02562 * 14 13 11 34 34 H 1.07997 * 119.99989 * 180.27528 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6989 -0.2379 2.4861 6 6 2.1555 -0.8921 3.6148 7 6 2.9548 -2.0133 3.4887 8 6 3.4566 -2.7230 4.7198 9 1 4.3198 -3.3356 4.4595 10 7 3.8467 -1.7319 5.7316 11 6 2.3650 -3.6024 5.2728 12 1 1.4037 -3.6431 4.7821 13 6 2.5929 -4.3544 6.4058 14 7 3.7633 -4.3045 7.0036 15 14 1.2395 -5.4439 7.0916 16 1 0.8449 -6.4461 6.0692 17 1 1.7340 -6.1433 8.3046 18 1 0.0636 -4.6090 7.4459 19 6 3.2888 -2.4866 2.2340 20 6 2.8276 -1.8351 1.1038 21 17 3.2478 -2.4284 -0.4727 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 1.0779 0.6401 2.5851 30 1 1.8911 -0.5253 4.5955 31 1 3.0631 -1.1510 5.9898 32 1 4.2468 -2.1806 6.5419 33 1 3.9238 -4.8338 7.8005 34 1 3.9095 -3.3649 2.1358 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358223.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:36 Heat of formation + Delta-G solvation = -22.865860 kcal Electronic energy + Delta-G solvation = -16362.152346 eV Core-core repulsion = 13704.870818 eV Total energy + Delta-G solvation = -2657.281529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67672 -37.69246 -37.10156 -35.50116 -33.23733 -31.59788 -30.20961 -27.91651 -27.89929 -25.03410 -23.82763 -22.12306 -20.77433 -18.60282 -17.86386 -16.77454 -16.52290 -16.08080 -15.82985 -15.00340 -14.84875 -14.60193 -14.59730 -14.00920 -13.70398 -13.58337 -13.23675 -12.97222 -12.85771 -12.74235 -12.46366 -12.31507 -12.09391 -12.03733 -11.96488 -11.78053 -11.39383 -11.15023 -10.72697 -9.68481 -9.39079 -9.14341 -8.13825 -6.40343 0.36198 0.49073 1.20523 1.37615 1.38908 1.46872 2.34783 2.83661 3.03922 3.72543 3.85992 4.14136 4.27321 4.37234 4.48214 4.52134 4.58467 4.71762 4.82992 4.88007 4.97213 5.04795 5.12660 5.18130 5.29799 5.33359 5.45593 5.52597 5.61543 5.64812 5.85922 6.05103 6.08293 6.61303 6.89090 7.10100 7.36276 8.80214 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.005743 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.961193 B = 4874.622565 C = 5031.994728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.086 4.086 5 C -0.099 4.099 6 C -0.110 4.110 7 C -0.043 4.043 8 C 0.245 3.755 9 H 0.009 0.991 10 N -0.841 5.841 11 C -0.560 4.560 12 H 0.047 0.953 13 C 0.024 3.976 14 N -0.915 5.915 15 Si 0.958 3.042 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.270 1.270 19 C -0.130 4.130 20 C -0.038 4.038 21 Cl -0.072 7.072 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.154 0.846 30 H 0.125 0.875 31 H 0.320 0.680 32 H 0.346 0.654 33 H 0.268 0.732 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 9.310 -12.085 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.079 4.079 3 C -0.195 4.195 4 C -0.087 4.087 5 C -0.117 4.117 6 C -0.128 4.128 7 C -0.044 4.044 8 C 0.134 3.866 9 H 0.027 0.973 10 N -0.370 5.370 11 C -0.599 4.599 12 H 0.066 0.934 13 C -0.176 4.176 14 N -0.554 5.554 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.195 1.195 19 C -0.149 4.149 20 C -0.065 4.065 21 Cl -0.043 7.043 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.171 0.829 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.865 9.458 -12.631 16.513 hybrid contribution -0.840 -1.765 1.215 2.301 sum -5.705 7.693 -11.416 14.902 Atomic orbital electron populations 1.21827 0.93125 1.01701 1.02981 1.20250 0.96914 0.96663 0.94035 1.21820 1.00723 0.94030 1.02975 1.19867 0.97725 0.94462 0.96669 1.21104 0.99900 1.00338 0.90314 1.21111 0.97171 0.95082 0.99448 1.20192 0.95245 0.94736 0.94231 1.17775 0.92946 0.88491 0.87348 0.97259 1.59485 1.34669 1.25153 1.17687 1.21974 0.99570 1.27147 1.11242 0.93444 1.25726 0.97669 0.97349 0.96901 1.69838 1.23095 1.41935 1.20536 0.85610 0.79475 0.78920 0.77625 1.20232 1.20582 1.19486 1.20866 1.02181 1.00627 0.91244 1.20792 1.02455 0.97780 0.85448 1.98299 1.92461 1.87858 1.25674 0.93728 0.91874 0.90485 0.90111 0.93494 0.90549 0.91831 0.82853 0.85707 0.86953 0.83940 0.92227 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.01 71.98 0.65 -2.02 16 2 C -0.06 -1.35 2.99 -11.54 -0.03 -1.39 16 3 C -0.14 -2.58 9.01 71.98 0.65 -1.93 16 4 C -0.09 -2.56 4.78 -19.84 -0.09 -2.65 16 5 C -0.10 -2.95 8.71 22.26 0.19 -2.76 16 6 C -0.11 -4.06 9.29 22.27 0.21 -3.85 16 7 C -0.04 -1.87 4.89 -19.87 -0.10 -1.97 16 8 C 0.24 12.38 2.95 43.42 0.13 12.51 16 9 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 10 N -0.84 -40.09 9.02 -174.95 -1.58 -41.67 16 11 C -0.56 -30.18 8.70 25.60 0.22 -29.95 16 12 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16 13 C 0.02 1.29 5.38 84.65 0.46 1.74 16 14 N -0.91 -50.45 11.54 21.45 0.25 -50.20 16 15 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 C -0.13 -5.25 9.45 22.29 0.21 -5.04 16 20 C -0.04 -1.31 6.31 22.32 0.14 -1.16 16 21 Cl -0.07 -2.11 27.01 -2.72 -0.07 -2.18 16 22 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.13 7.39 -2.39 -0.02 1.12 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.86 6.17 -2.39 -0.01 1.85 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.06 1.11 7.39 -2.39 -0.02 1.09 16 29 H 0.15 3.52 7.10 -2.91 -0.02 3.50 16 30 H 0.13 4.47 6.67 -2.91 -0.02 4.46 16 31 H 0.32 14.15 7.35 -89.70 -0.66 13.49 16 32 H 0.35 17.76 7.08 -89.69 -0.63 17.12 16 33 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 34 H 0.11 4.72 8.04 -2.91 -0.02 4.70 16 Total: -1.00 -57.11 293.70 3.07 -54.04 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.18 Total: 33.86 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 2.63 Total: -38.47 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -1.33 Total: -91.87 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -57.11 3.07 -54.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358223.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.174 kcal (2) G-P(sol) polarization free energy of solvation -57.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds