Wall clock time and date at job start Mon Mar 30 2020 07:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.35597 * 2 1 4 4 C 1.53004 * 109.41540 * 119.82750 * 2 1 3 5 5 C 1.53420 * 109.82085 * 192.07494 * 4 2 1 6 6 C 1.50792 * 108.11689 * 309.35420 * 5 4 2 7 7 C 1.34093 * 128.94561 * 196.73322 * 6 5 4 8 8 Cl 1.73598 * 125.98065 * 359.61718 * 7 6 5 9 9 N 1.36661 * 108.03902 * 179.62214 * 7 6 5 10 10 C 1.46504 * 125.60849 * 180.02562 * 9 7 6 11 11 C 1.36807 * 108.78960 * 0.06227 * 9 7 6 12 12 C 1.33950 * 108.06246 * 0.06503 * 11 9 7 13 13 C 1.50788 * 128.94464 * 179.78666 * 12 11 9 14 14 H 1.09002 * 109.77195 * 76.87211 * 13 12 11 15 15 C 1.50706 * 109.73513 * 316.20625 * 13 12 11 16 16 H 1.07992 * 120.00362 * 276.57577 * 15 13 12 17 17 C 1.37880 * 119.99843 * 96.57493 * 15 13 12 18 18 N 1.31510 * 120.00107 * 184.72256 * 17 15 13 19 19 Si 1.86798 * 120.00006 * 4.71401 * 17 15 13 20 20 H 1.48504 * 109.47130 * 85.39510 * 19 17 15 21 21 H 1.48503 * 109.47311 * 205.39281 * 19 17 15 22 22 H 1.48494 * 109.47576 * 325.39379 * 19 17 15 23 23 H 1.09003 * 109.46721 * 300.17884 * 1 2 3 24 24 H 1.08997 * 109.47136 * 60.17449 * 1 2 3 25 25 H 1.08997 * 109.46979 * 180.17589 * 1 2 3 26 26 H 1.09001 * 109.41135 * 312.17673 * 4 2 1 27 27 H 1.08993 * 109.41887 * 71.96379 * 4 2 1 28 28 H 1.09001 * 109.73523 * 69.01153 * 5 4 2 29 29 H 1.09002 * 109.73081 * 189.69940 * 5 4 2 30 30 H 1.09003 * 109.46904 * 269.99673 * 10 9 7 31 31 H 1.08995 * 109.47190 * 29.99534 * 10 9 7 32 32 H 1.09000 * 109.47089 * 150.00010 * 10 9 7 33 33 H 1.07995 * 125.97034 * 180.02562 * 11 9 7 34 34 H 0.96998 * 120.00582 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8913 1.0284 0.0000 4 6 2.0386 -0.7177 1.2519 5 6 3.5426 -0.4665 1.4207 6 6 4.2210 -0.7847 0.1121 7 6 5.5209 -1.0059 -0.1316 8 17 6.7990 -0.9712 1.0427 9 7 5.6635 -1.2634 -1.4661 10 6 6.9263 -1.5582 -2.1479 11 6 4.4332 -1.1997 -2.0611 12 6 3.5299 -0.9055 -1.1168 13 6 2.0400 -0.7196 -1.2554 14 1 1.5540 -1.6911 -1.3457 15 6 1.7424 0.1134 -2.4756 16 1 1.7889 1.1908 -2.4184 17 6 1.4107 -0.5001 -3.6650 18 7 1.2420 0.2206 -4.7520 19 14 1.2012 -2.3551 -3.7325 20 1 -0.1849 -2.7115 -3.3362 21 1 1.4590 -2.8324 -5.1149 22 1 2.1629 -2.9962 -2.8001 23 1 -0.3633 0.5166 0.8884 24 1 -0.3633 0.5111 -0.8915 25 1 -0.3633 -1.0276 0.0032 26 1 1.5080 -0.3409 2.1263 27 1 1.8589 -1.7883 1.1540 28 1 3.7145 0.5782 1.6798 29 1 3.9375 -1.1109 2.2061 30 1 7.3770 -0.6287 -2.4957 31 1 7.6059 -2.0545 -1.4552 32 1 6.7355 -2.2106 -3.0000 33 1 4.2264 -1.3584 -3.1091 34 1 1.0090 -0.2109 -5.5889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260421247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:07 Heat of formation + Delta-G solvation = 9.755742 kcal Electronic energy + Delta-G solvation = -17123.522643 eV Core-core repulsion = 14467.655693 eV Total energy + Delta-G solvation = -2655.866950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.28121 -38.32335 -37.50758 -34.82873 -33.55247 -32.45183 -29.66184 -28.57759 -26.49761 -25.45657 -23.04744 -21.43759 -20.84691 -19.41602 -18.88108 -17.65661 -16.45194 -16.22530 -15.46658 -15.27585 -14.91457 -14.66704 -14.49609 -14.06761 -13.82242 -13.50249 -13.36549 -13.05618 -12.81353 -12.75608 -12.43134 -12.37824 -12.19699 -12.00295 -11.87279 -11.57246 -11.31012 -11.04475 -10.70762 -10.58667 -9.03547 -8.79395 -8.20093 -6.19444 0.84378 1.22204 1.34975 1.38803 1.50010 2.10964 2.26432 2.39953 3.18567 3.87842 4.16342 4.23365 4.28496 4.30374 4.37559 4.60688 4.65979 4.76389 4.86020 4.89371 5.04204 5.08564 5.13315 5.22857 5.27446 5.34093 5.52608 5.58674 5.69236 5.81904 5.85546 6.13577 6.31696 6.42815 6.45884 6.87261 7.43759 8.97325 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.009467 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.886107 B = 2956.823728 C = 3875.324609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 H 0.043 0.957 4 C -0.104 4.104 5 C -0.038 4.038 6 C -0.161 4.161 7 C 0.050 3.950 8 Cl -0.016 7.016 9 N -0.460 5.460 10 C 0.068 3.932 11 C -0.003 4.003 12 C -0.144 4.144 13 C 0.082 3.918 14 H 0.033 0.967 15 C -0.482 4.482 16 H 0.027 0.973 17 C 0.021 3.979 18 N -0.952 5.952 19 Si 0.923 3.077 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.246 1.246 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.152 0.848 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -5.717 11.288 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 H 0.062 0.938 4 C -0.141 4.141 5 C -0.076 4.076 6 C -0.170 4.170 7 C -0.086 4.086 8 Cl 0.012 6.988 9 N -0.141 5.141 10 C -0.073 4.073 11 C -0.130 4.130 12 C -0.151 4.151 13 C 0.062 3.938 14 H 0.051 0.949 15 C -0.520 4.520 16 H 0.045 0.955 17 C -0.175 4.175 18 N -0.593 5.593 19 Si 0.749 3.251 20 H -0.195 1.195 21 H -0.217 1.217 22 H -0.170 1.170 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.169 0.831 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.751 -5.807 11.026 15.823 hybrid contribution -0.004 -0.397 -0.993 1.069 sum 9.747 -6.204 10.033 15.302 Atomic orbital electron populations 1.21678 0.95276 1.01093 1.00891 1.21062 0.95508 0.98439 0.94373 0.93827 1.21597 0.94890 1.00238 0.97394 1.20055 0.94464 1.01140 0.91900 1.19542 0.90540 1.09609 0.97269 1.20285 0.89730 1.15824 0.82723 1.98309 1.49788 1.97603 1.53056 1.44138 1.08037 1.56369 1.05580 1.22231 0.83012 1.03078 0.98933 1.21264 0.82969 1.10421 0.98396 1.20193 0.97614 1.05278 0.92031 1.17785 0.87410 0.94838 0.93728 0.94945 1.21048 1.44061 0.92889 0.94024 0.95486 1.25705 0.95087 1.01720 0.95023 1.70053 1.51033 1.37605 1.00637 0.86090 0.79956 0.81967 0.77135 1.19464 1.21747 1.16961 0.91483 0.94544 0.93221 0.89829 0.92520 0.91217 0.89949 0.90221 0.88428 0.88560 0.83099 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.01 71.98 0.65 -4.20 16 2 C -0.08 -2.97 2.09 -10.65 -0.02 -3.00 16 3 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 4 C -0.10 -3.26 5.17 30.74 0.16 -3.10 16 5 C -0.04 -1.18 6.18 30.02 0.19 -0.99 16 6 C -0.16 -6.03 5.92 -19.98 -0.12 -6.15 16 7 C 0.05 1.71 7.40 83.00 0.61 2.32 16 8 Cl -0.02 -0.41 28.63 -2.72 -0.08 -0.49 16 9 N -0.46 -15.86 3.17 -537.65 -1.70 -17.56 16 10 C 0.07 1.61 10.96 127.77 1.40 3.01 16 11 C 0.00 -0.11 10.99 82.94 0.91 0.81 16 12 C -0.14 -6.36 5.43 -20.01 -0.11 -6.47 16 13 C 0.08 3.82 1.57 -12.11 -0.02 3.80 16 14 H 0.03 1.55 5.25 -2.39 -0.01 1.53 16 15 C -0.48 -27.03 7.77 25.60 0.20 -26.84 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 17 C 0.02 1.19 5.47 84.66 0.46 1.65 16 18 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 19 Si 0.92 43.85 26.75 68.60 1.84 45.69 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.06 6.78 99.48 0.67 -10.39 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.53 7.55 -2.39 -0.02 1.51 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 27 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.89 7.79 -2.39 -0.02 1.87 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.15 6.63 7.80 -2.91 -0.02 6.61 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -65.83 289.34 5.72 -60.11 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.05 Total: 9.92 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.31 Total: -39.16 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.40 Total: -76.07 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.84 Total: 45.69 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -65.83 5.72 -60.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.868 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds