Wall clock time and date at job start Mon Mar 30 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.41251 * 2 1 4 4 C 1.53006 * 109.40922 * 119.78407 * 2 1 3 5 5 C 1.53430 * 109.81576 * 48.14721 * 4 2 1 6 6 C 1.50789 * 108.11116 * 50.67394 * 5 4 2 7 7 C 1.34095 * 128.94791 * 163.25714 * 6 5 4 8 8 Cl 1.73603 * 125.97827 * 0.27180 * 7 6 5 9 9 N 1.36654 * 108.04250 * 180.30906 * 7 6 5 10 10 C 1.46497 * 125.60771 * 179.97438 * 9 7 6 11 11 C 1.36806 * 108.78892 * 359.93738 * 9 7 6 12 12 C 1.33950 * 108.06145 * 359.94705 * 11 9 7 13 13 C 1.50798 * 128.94251 * 180.19333 * 12 11 9 14 14 H 1.09007 * 109.73020 * 283.08300 * 13 12 11 15 15 C 1.50697 * 109.73563 * 43.76630 * 13 12 11 16 16 H 1.07998 * 119.99462 * 33.68162 * 15 13 12 17 17 C 1.37871 * 120.00209 * 213.67440 * 15 13 12 18 18 N 1.31514 * 120.00234 * 5.38836 * 17 15 13 19 19 Si 1.86804 * 119.99903 * 185.38420 * 17 15 13 20 20 H 1.48498 * 109.46811 * 60.00624 * 19 17 15 21 21 H 1.48507 * 109.46783 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47226 * 299.99988 * 19 17 15 23 23 H 1.09000 * 109.47202 * 179.85541 * 1 2 3 24 24 H 1.09004 * 109.46886 * 59.85393 * 1 2 3 25 25 H 1.09002 * 109.47175 * 299.85633 * 1 2 3 26 26 H 1.08998 * 109.41456 * 168.26324 * 4 2 1 27 27 H 1.08999 * 109.41078 * 288.04891 * 4 2 1 28 28 H 1.08996 * 109.75094 * 291.00605 * 5 4 2 29 29 H 1.09002 * 109.71510 * 170.31926 * 5 4 2 30 30 H 1.09003 * 109.47442 * 89.97528 * 10 9 7 31 31 H 1.08999 * 109.47206 * 209.97676 * 10 9 7 32 32 H 1.08999 * 109.46924 * 329.97384 * 10 9 7 33 33 H 1.07994 * 125.97008 * 179.97438 * 11 9 7 34 34 H 0.97005 * 120.00305 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0280 0.0000 4 6 2.0385 -0.7168 1.2525 5 6 1.3030 -2.0526 1.4219 6 6 1.3794 -2.7991 0.1140 7 6 1.1579 -4.0991 -0.1289 8 17 0.7038 -5.2932 1.0466 9 7 1.3529 -4.3196 -1.4633 10 6 1.2128 -5.6092 -2.1441 11 6 1.6997 -3.1380 -2.0591 12 6 1.7217 -2.1877 -1.1153 13 6 2.0398 -0.7203 -1.2549 14 1 3.1176 -0.5844 -1.3450 15 6 1.3524 -0.1645 -2.4754 16 1 0.3888 -0.5495 -2.7747 17 6 1.9535 0.8357 -3.2097 18 7 3.1713 1.2311 -2.9090 19 14 1.0384 1.6291 -4.6319 20 1 -0.2109 2.2547 -4.1290 21 1 1.8971 2.6684 -5.2547 22 1 0.7020 0.5947 -5.6427 23 1 -0.3633 -1.0277 -0.0026 24 1 -0.3633 0.5161 -0.8887 25 1 -0.3634 0.5116 0.8913 26 1 3.1082 -0.9019 1.1549 27 1 1.8585 -0.0908 2.1264 28 1 0.2602 -1.8687 1.6804 29 1 1.7799 -2.6379 2.2082 30 1 0.1862 -5.7274 -2.4909 31 1 1.8908 -5.6454 -2.9968 32 1 1.4572 -6.4143 -1.4512 33 1 1.9172 -2.9960 -3.1074 34 1 3.5943 1.9346 -3.4259 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260421253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:12 Heat of formation + Delta-G solvation = 13.319769 kcal Electronic energy + Delta-G solvation = -17132.189218 eV Core-core repulsion = 14476.476816 eV Total energy + Delta-G solvation = -2655.712402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.27026 -38.41849 -37.47086 -34.81164 -33.14427 -32.10486 -28.97545 -28.33273 -26.68585 -26.12082 -23.20142 -21.42912 -20.91721 -18.67343 -18.09457 -17.57470 -16.40441 -16.36903 -15.68644 -15.34735 -15.08052 -14.53466 -14.17920 -13.81910 -13.45829 -13.41594 -13.31173 -13.02170 -12.78001 -12.62331 -12.47126 -12.29773 -12.25088 -12.01477 -11.76590 -11.57486 -11.17127 -10.79288 -10.59344 -10.39126 -8.98106 -8.74598 -8.00498 -6.07666 0.89669 1.28046 1.43640 1.45507 1.52353 2.18727 2.32579 2.51559 3.27424 3.94437 4.25688 4.32709 4.39224 4.40798 4.44095 4.66475 4.76422 4.83572 4.94504 4.98995 5.09325 5.14178 5.26705 5.34451 5.40179 5.51161 5.67748 5.77920 5.81504 5.92090 6.01613 6.22112 6.37147 6.51797 6.59438 7.06840 7.56200 9.06280 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.007735 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.135512 B = 3619.046468 C = 4289.576843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 H 0.028 0.972 4 C -0.105 4.105 5 C -0.034 4.034 6 C -0.158 4.158 7 C 0.048 3.952 8 Cl -0.020 7.020 9 N -0.458 5.458 10 C 0.070 3.930 11 C -0.003 4.003 12 C -0.137 4.137 13 C 0.105 3.895 14 H 0.020 0.980 15 C -0.492 4.492 16 H 0.047 0.953 17 C 0.014 3.986 18 N -0.930 5.930 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.271 1.271 23 H 0.048 0.952 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -12.110 5.590 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 H 0.047 0.953 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.167 4.167 7 C -0.087 4.087 8 Cl 0.009 6.991 9 N -0.139 5.139 10 C -0.071 4.071 11 C -0.131 4.131 12 C -0.143 4.143 13 C 0.086 3.914 14 H 0.038 0.962 15 C -0.530 4.530 16 H 0.065 0.935 17 C -0.184 4.184 18 N -0.570 5.570 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.196 1.196 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.182 0.818 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.482 -12.449 5.444 14.307 hybrid contribution -0.147 0.606 -1.040 1.213 sum -4.629 -11.843 4.403 13.456 Atomic orbital electron populations 1.21598 0.95539 1.00596 0.99674 1.21091 0.95960 0.97339 0.95127 0.95314 1.21552 0.98856 0.96222 0.97621 1.20005 1.00598 0.94315 0.92203 1.19440 1.09135 0.91020 0.97129 1.20226 1.15175 0.90422 0.82916 1.98308 1.91316 1.56262 1.53253 1.44104 1.55225 1.09302 1.05295 1.22211 1.04104 0.81891 0.98861 1.21375 1.09196 0.83639 0.98845 1.20040 1.05320 0.96866 0.92074 1.17352 0.95291 0.86106 0.92697 0.96189 1.21174 1.03666 1.18239 1.09942 0.93454 1.25641 0.95273 0.97856 0.99601 1.70051 1.14097 1.30574 1.42292 0.85850 0.78694 0.78414 0.80132 1.19926 1.21454 1.19643 0.93273 0.94475 0.93284 0.93916 0.91080 0.90701 0.90705 0.90064 0.88322 0.88965 0.81799 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 7.97 71.98 0.57 -4.22 16 2 C -0.08 -3.41 2.83 -10.65 -0.03 -3.44 16 3 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.10 -3.90 5.52 30.74 0.17 -3.73 16 5 C -0.03 -1.13 5.54 30.02 0.17 -0.97 16 6 C -0.16 -6.04 5.09 -19.98 -0.10 -6.14 16 7 C 0.05 1.63 7.40 83.00 0.61 2.24 16 8 Cl -0.02 -0.52 28.63 -2.72 -0.08 -0.59 16 9 N -0.46 -14.93 3.17 -537.66 -1.70 -16.63 16 10 C 0.07 1.51 10.96 127.77 1.40 2.91 16 11 C 0.00 -0.12 10.99 82.94 0.91 0.80 16 12 C -0.14 -6.04 4.94 -20.01 -0.10 -6.14 16 13 C 0.10 5.29 2.42 -12.12 -0.03 5.26 16 14 H 0.02 1.18 7.28 -2.38 -0.02 1.16 16 15 C -0.49 -26.56 6.34 25.60 0.16 -26.40 16 16 H 0.05 2.56 7.78 -2.91 -0.02 2.54 16 17 C 0.01 0.76 5.45 84.65 0.46 1.22 16 18 N -0.93 -54.77 12.79 21.44 0.27 -54.50 16 19 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H 0.05 1.97 5.55 -2.39 -0.01 1.96 16 24 H 0.04 1.66 6.96 -2.39 -0.02 1.64 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.36 6.97 -2.39 -0.02 2.34 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.69 7.79 -2.39 -0.02 1.67 16 33 H 0.16 6.44 8.06 -2.91 -0.02 6.41 16 34 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -62.08 286.55 5.81 -56.28 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.09 Total: 8.26 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.20 Total: -38.60 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.43 Total: -71.13 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.59 kcal Total: -62.08 5.81 -56.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.597 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds