Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47543 * 2 1 4 4 C 1.50704 * 109.47077 * 119.99887 * 2 1 3 5 5 C 1.38260 * 119.98986 * 300.23561 * 4 2 1 6 6 C 1.38193 * 120.01392 * 180.27632 * 5 4 2 7 7 C 1.38369 * 119.98533 * 359.73712 * 6 5 4 8 8 Cl 1.73601 * 120.01123 * 179.97438 * 7 6 5 9 9 C 1.38324 * 119.97744 * 0.02562 * 7 6 5 10 10 C 1.38224 * 119.98722 * 119.99352 * 4 2 1 11 11 C 1.50706 * 119.99037 * 0.02562 * 10 4 2 12 12 H 1.09000 * 109.47318 * 324.71348 * 11 10 4 13 13 N 1.46902 * 109.46577 * 204.71841 * 11 10 4 14 14 C 1.50698 * 109.47294 * 84.72308 * 11 10 4 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47454 * 59.99696 * 18 16 14 20 20 H 1.48506 * 109.47297 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99488 * 18 16 14 22 22 H 1.09001 * 109.46891 * 300.00144 * 1 2 3 23 23 H 1.09007 * 109.46951 * 59.99592 * 1 2 3 24 24 H 1.08997 * 109.47668 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47412 * 239.99916 * 2 1 3 26 26 H 1.09001 * 109.47432 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47387 * 299.99719 * 3 2 1 28 28 H 1.09001 * 109.47144 * 60.00011 * 3 2 1 29 29 H 1.07998 * 119.99091 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.00152 * 179.76545 * 6 5 4 31 31 H 1.08001 * 120.01032 * 179.97438 * 9 7 6 32 32 H 1.00906 * 110.99720 * 176.04443 * 13 11 10 33 33 H 1.00896 * 111.00210 * 300.00030 * 13 11 10 34 34 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6941 -0.2407 2.4861 6 6 2.1592 -0.8884 3.6148 7 6 2.9589 -2.0104 3.4882 8 17 3.5441 -2.8242 4.9056 9 6 3.2929 -2.4828 2.2317 10 6 2.8268 -1.8343 1.1034 11 6 3.1910 -2.3485 -0.2656 12 1 2.3543 -2.1929 -0.9466 13 7 3.4959 -3.7833 -0.1845 14 6 4.3991 -1.6063 -0.7761 15 1 4.8572 -0.8387 -0.1699 16 6 4.9190 -1.9065 -2.0173 17 7 4.3608 -2.8409 -2.7555 18 14 6.4161 -0.9860 -2.6503 19 1 7.5564 -1.1981 -1.7229 20 1 6.7750 -1.4928 -3.9993 21 1 6.1075 0.4643 -2.7319 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.0697 0.6350 2.5848 30 1 1.8980 -0.5190 4.5956 31 1 3.9175 -3.3583 2.1322 32 1 3.6804 -4.1660 -1.0998 33 1 4.2687 -3.9539 0.4413 34 1 4.7268 -3.0523 -3.6286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -5.263353 kcal Electronic energy + Delta-G solvation = -16825.691058 eV Core-core repulsion = 14169.172832 eV Total energy + Delta-G solvation = -2656.518227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.34091 -36.30069 -34.76960 -34.52805 -31.71299 -29.32969 -28.99898 -26.70200 -26.04636 -23.28578 -22.70621 -20.10084 -19.29663 -16.59068 -16.54084 -15.32523 -14.86463 -14.44657 -13.98342 -13.53131 -13.34615 -13.26850 -12.75690 -12.52027 -12.30215 -12.15648 -11.85504 -11.42346 -11.21994 -11.00796 -10.94735 -10.84423 -10.55298 -10.48814 -10.24838 -10.14353 -10.04327 -9.42016 -8.72418 -8.17598 -7.87227 -7.25943 -6.14752 -4.31542 1.77457 1.98015 2.59916 3.20415 3.25968 3.29161 4.20348 4.35930 5.07388 5.22785 5.30523 5.43723 5.56181 5.71119 5.86070 5.96766 6.00491 6.01615 6.20334 6.33949 6.37810 6.42956 6.49299 6.54938 6.75399 6.82479 6.92842 6.97066 7.16658 7.47062 7.68586 7.69511 8.02142 8.60164 8.86821 9.04661 9.40359 10.82702 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.008299 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.812394 B = 3373.184303 C = 4226.978225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.136 4.136 4 C -0.071 4.071 5 C -0.110 4.110 6 C -0.138 4.138 7 C -0.040 4.040 8 Cl -0.096 7.096 9 C -0.100 4.100 10 C -0.014 4.014 11 C 0.240 3.760 12 H 0.056 0.944 13 N -0.852 5.852 14 C -0.541 4.541 15 H 0.055 0.945 16 C 0.068 3.932 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.357 0.643 33 H 0.312 0.688 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 4.226 7.696 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.193 4.193 4 C -0.072 4.072 5 C -0.128 4.128 6 C -0.157 4.157 7 C -0.066 4.066 8 Cl -0.068 7.068 9 C -0.119 4.119 10 C -0.015 4.015 11 C 0.131 3.869 12 H 0.074 0.926 13 N -0.383 5.383 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.134 4.134 17 N -0.531 5.531 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.121 0.879 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.336 3.975 7.908 10.335 hybrid contribution 1.930 0.726 -0.579 2.142 sum -3.406 4.700 7.329 9.349 Atomic orbital electron populations 1.21842 0.95394 1.01611 1.00906 1.20207 0.94645 0.95962 0.97370 1.21759 1.01814 0.95222 1.00495 1.19759 0.97546 0.95582 0.94307 1.20770 1.00665 0.99824 0.91579 1.20724 1.00207 0.95871 0.98852 1.20875 1.01869 0.96581 0.87284 1.98314 1.88034 1.79426 1.40981 1.20874 1.00789 1.00686 0.89584 1.20369 0.91937 0.92394 0.96840 1.18048 0.96037 0.86177 0.86688 0.92609 1.59572 1.45201 1.16064 1.17430 1.21693 1.13099 1.21159 1.02079 0.92644 1.24987 0.97106 0.95074 0.96262 1.69726 1.40601 1.30960 1.11835 0.86600 0.82937 0.80263 0.77933 1.20224 1.21186 1.20080 0.93270 0.92863 0.92725 0.87840 0.92183 0.93012 0.93567 0.86242 0.86273 0.85142 0.82679 0.87855 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.00 37.16 0.33 -1.71 16 2 C -0.06 -1.10 2.88 -91.77 -0.26 -1.37 16 3 C -0.14 -2.11 9.01 37.16 0.33 -1.78 16 4 C -0.07 -1.32 4.78 -104.62 -0.50 -1.82 16 5 C -0.11 -1.79 8.71 -39.59 -0.34 -2.13 16 6 C -0.14 -2.22 9.83 -39.55 -0.39 -2.61 16 7 C -0.04 -0.70 6.32 -39.50 -0.25 -0.95 16 8 Cl -0.10 -1.50 28.96 -51.86 -1.50 -3.00 16 9 C -0.10 -1.98 9.05 -39.55 -0.36 -2.33 16 10 C -0.01 -0.30 4.99 -104.63 -0.52 -0.82 16 11 C 0.24 5.66 2.25 -70.01 -0.16 5.50 16 12 H 0.06 1.43 6.40 -51.93 -0.33 1.10 16 13 N -0.85 -19.66 8.79 -6.65 -0.06 -19.72 16 14 C -0.54 -13.76 8.48 -34.44 -0.29 -14.05 16 15 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.07 1.76 5.38 -17.82 -0.10 1.67 16 17 N -0.89 -23.59 11.54 55.43 0.64 -22.95 16 18 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H 0.05 0.63 7.37 -51.93 -0.38 0.25 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.10 2.12 5.40 -51.93 -0.28 1.84 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.63 7.40 -51.93 -0.38 0.24 16 29 H 0.12 1.63 7.10 -52.49 -0.37 1.26 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.13 2.57 6.29 -52.49 -0.33 2.24 16 32 H 0.36 8.80 7.08 -39.29 -0.28 8.52 16 33 H 0.31 6.90 7.20 -39.29 -0.28 6.62 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -25.46 291.77 -8.35 -33.81 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -4.30 Total: 14.49 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.50 Total: -22.40 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.58 Total: -42.67 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.50 Total: -3.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -25.46 -8.35 -33.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.547 kcal (2) G-P(sol) polarization free energy of solvation -25.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds