Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47543 * 2 1 4 4 C 1.50704 * 109.47077 * 119.99887 * 2 1 3 5 5 C 1.38260 * 119.98986 * 300.23561 * 4 2 1 6 6 C 1.38193 * 120.01392 * 180.27632 * 5 4 2 7 7 C 1.38369 * 119.98533 * 359.73712 * 6 5 4 8 8 Cl 1.73601 * 120.01123 * 179.97438 * 7 6 5 9 9 C 1.38324 * 119.97744 * 0.02562 * 7 6 5 10 10 C 1.38224 * 119.98722 * 119.99352 * 4 2 1 11 11 C 1.50706 * 119.99037 * 0.02562 * 10 4 2 12 12 H 1.09000 * 109.47318 * 324.71348 * 11 10 4 13 13 N 1.46902 * 109.46577 * 204.71841 * 11 10 4 14 14 C 1.50698 * 109.47294 * 84.72308 * 11 10 4 15 15 H 1.08005 * 119.99819 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00046 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47454 * 59.99696 * 18 16 14 20 20 H 1.48506 * 109.47297 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46926 * 299.99488 * 18 16 14 22 22 H 1.09001 * 109.46891 * 300.00144 * 1 2 3 23 23 H 1.09007 * 109.46951 * 59.99592 * 1 2 3 24 24 H 1.08997 * 109.47668 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47412 * 239.99916 * 2 1 3 26 26 H 1.09001 * 109.47432 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47387 * 299.99719 * 3 2 1 28 28 H 1.09001 * 109.47144 * 60.00011 * 3 2 1 29 29 H 1.07998 * 119.99091 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.00152 * 179.76545 * 6 5 4 31 31 H 1.08001 * 120.01032 * 179.97438 * 9 7 6 32 32 H 1.00906 * 110.99720 * 176.04443 * 13 11 10 33 33 H 1.00896 * 111.00210 * 300.00030 * 13 11 10 34 34 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6941 -0.2407 2.4861 6 6 2.1592 -0.8884 3.6148 7 6 2.9589 -2.0104 3.4882 8 17 3.5441 -2.8242 4.9056 9 6 3.2929 -2.4828 2.2317 10 6 2.8268 -1.8343 1.1034 11 6 3.1910 -2.3485 -0.2656 12 1 2.3543 -2.1929 -0.9466 13 7 3.4959 -3.7833 -0.1845 14 6 4.3991 -1.6063 -0.7761 15 1 4.8572 -0.8387 -0.1699 16 6 4.9190 -1.9065 -2.0173 17 7 4.3608 -2.8409 -2.7555 18 14 6.4161 -0.9860 -2.6503 19 1 7.5564 -1.1981 -1.7229 20 1 6.7750 -1.4928 -3.9993 21 1 6.1075 0.4643 -2.7319 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.0697 0.6350 2.5848 30 1 1.8980 -0.5190 4.5956 31 1 3.9175 -3.3583 2.1322 32 1 3.6804 -4.1660 -1.0998 33 1 4.2687 -3.9539 0.4413 34 1 4.7268 -3.0523 -3.6286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436643.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -18.620441 kcal Electronic energy + Delta-G solvation = -16826.270265 eV Core-core repulsion = 14169.172832 eV Total energy + Delta-G solvation = -2657.097433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76708 -37.62456 -36.52324 -35.86763 -33.57577 -30.88819 -30.40466 -28.00794 -27.84287 -24.93594 -24.09860 -21.67609 -20.67949 -18.56922 -18.02992 -16.77931 -16.61021 -15.93020 -15.59657 -14.98259 -14.88566 -14.59075 -14.39321 -13.97416 -13.77903 -13.49337 -13.20011 -12.97508 -12.93237 -12.77022 -12.43089 -12.29870 -12.08293 -11.98314 -11.75859 -11.64335 -11.48725 -11.02380 -10.66970 -9.62447 -9.35236 -9.12127 -8.11098 -6.35400 0.37960 0.57319 1.26480 1.36814 1.38588 1.45620 2.35815 2.87151 3.06606 3.92546 3.97496 4.11230 4.23059 4.37853 4.44822 4.61212 4.67333 4.80298 4.88360 4.99139 5.02369 5.04395 5.10724 5.25543 5.39775 5.41669 5.48353 5.52083 5.62192 5.66503 5.96483 6.10365 6.14144 6.64553 6.92956 7.09165 7.39368 8.83031 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.017719 B = 0.008299 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.812394 B = 3373.184303 C = 4226.978225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 C -0.130 4.130 4 C -0.079 4.079 5 C -0.102 4.102 6 C -0.126 4.126 7 C -0.047 4.047 8 Cl -0.078 7.078 9 C -0.115 4.115 10 C -0.048 4.048 11 C 0.248 3.752 12 H 0.026 0.974 13 N -0.847 5.847 14 C -0.545 4.545 15 H 0.043 0.957 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.273 1.273 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.346 0.654 33 H 0.316 0.684 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 5.966 9.404 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.084 4.084 3 C -0.187 4.187 4 C -0.080 4.080 5 C -0.120 4.120 6 C -0.144 4.144 7 C -0.074 4.074 8 Cl -0.050 7.050 9 C -0.134 4.134 10 C -0.049 4.049 11 C 0.138 3.862 12 H 0.044 0.956 13 N -0.376 5.376 14 C -0.585 4.585 15 H 0.061 0.939 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.776 3.224 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.198 1.198 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.126 0.874 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.048 5.715 9.632 12.728 hybrid contribution 2.125 0.171 -1.037 2.371 sum -3.923 5.886 8.595 11.131 Atomic orbital electron populations 1.21787 0.93019 1.01393 1.02831 1.20162 0.96596 0.96398 0.95200 1.21720 1.00158 0.94340 1.02517 1.19980 0.97116 0.94917 0.95976 1.21107 1.00187 1.00464 0.90258 1.21144 0.98346 0.94543 1.00402 1.20958 1.02069 0.97213 0.87131 1.98317 1.87888 1.79233 1.39525 1.20814 1.01372 1.00719 0.90500 1.20209 0.94603 0.94417 0.95630 1.17809 0.94283 0.85963 0.88186 0.95620 1.59559 1.45236 1.16117 1.16665 1.21829 1.13701 1.20835 1.02099 0.93914 1.25625 0.99381 0.95832 0.96522 1.69821 1.41638 1.31914 1.11989 0.85741 0.80067 0.79234 0.77387 1.20201 1.20777 1.19791 0.90665 0.91568 0.94038 0.92131 0.94703 0.91760 0.90752 0.82632 0.82904 0.86239 0.83929 0.87420 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.00 71.98 0.65 -2.98 16 2 C -0.07 -2.23 2.88 -11.54 -0.03 -2.26 16 3 C -0.13 -3.85 9.01 71.98 0.65 -3.20 16 4 C -0.08 -2.87 4.78 -19.86 -0.09 -2.97 16 5 C -0.10 -2.98 8.71 22.26 0.19 -2.78 16 6 C -0.13 -3.61 9.83 22.29 0.22 -3.39 16 7 C -0.05 -1.58 6.32 22.32 0.14 -1.44 16 8 Cl -0.08 -2.28 28.96 -2.72 -0.08 -2.36 16 9 C -0.11 -4.54 9.05 22.29 0.20 -4.34 16 10 C -0.05 -2.03 4.99 -19.87 -0.10 -2.13 16 11 C 0.25 12.18 2.25 43.42 0.10 12.28 16 12 H 0.03 1.42 6.40 -2.39 -0.02 1.40 16 13 N -0.85 -40.76 8.79 -174.94 -1.54 -42.29 16 14 C -0.54 -28.70 8.48 25.60 0.22 -28.48 16 15 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 16 C 0.03 1.41 5.38 84.65 0.46 1.87 16 17 N -0.91 -49.73 11.54 21.45 0.25 -49.48 16 18 Si 0.95 42.44 29.54 68.60 2.03 44.47 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H 0.07 1.65 7.37 -2.39 -0.02 1.63 16 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 2.59 5.40 -2.39 -0.01 2.58 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.75 7.40 -2.39 -0.02 1.74 16 29 H 0.16 3.39 7.10 -2.91 -0.02 3.37 16 30 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.12 4.83 6.29 -2.91 -0.02 4.81 16 32 H 0.35 17.82 7.08 -89.69 -0.63 17.19 16 33 H 0.32 14.56 7.20 -89.70 -0.65 13.92 16 34 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -56.01 291.77 3.10 -52.91 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.16 Total: 36.58 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 2.60 Total: -39.82 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -1.29 Total: -91.77 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -56.01 3.10 -52.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436643.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.289 kcal (2) G-P(sol) polarization free energy of solvation -56.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds