Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38265 * 119.98921 * 2 1 4 4 C 1.38195 * 120.01334 * 180.02562 * 3 2 1 5 5 C 1.38368 * 119.98769 * 359.97438 * 4 3 2 6 6 Cl 1.73602 * 120.01304 * 180.02562 * 5 4 3 7 7 C 1.38333 * 119.97477 * 0.02562 * 5 4 3 8 8 C 1.50704 * 120.00535 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47416 * 14.62977 * 8 7 5 10 10 N 1.46896 * 109.47185 * 134.63539 * 8 7 5 11 11 C 1.53007 * 109.46576 * 254.62975 * 8 7 5 12 12 C 1.50696 * 109.46525 * 175.10663 * 11 8 7 13 13 H 1.08000 * 120.00648 * 0.02562 * 12 11 8 14 14 C 1.37888 * 119.99869 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99427 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00196 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46957 * 89.99777 * 16 14 12 18 18 H 1.48501 * 109.47019 * 209.99998 * 16 14 12 19 19 H 1.48496 * 109.46820 * 329.99947 * 16 14 12 20 20 C 1.38226 * 119.98782 * 180.27645 * 2 1 3 21 21 C 1.50697 * 119.99283 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47009 * 90.00027 * 1 2 3 23 23 H 1.09000 * 109.47477 * 210.00288 * 1 2 3 24 24 H 1.09002 * 109.46870 * 330.00379 * 1 2 3 25 25 H 1.07998 * 119.99466 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.00478 * 179.97438 * 4 3 2 27 27 H 1.00906 * 111.00296 * 76.45294 * 10 8 7 28 28 H 1.00899 * 111.00407 * 200.41475 * 10 8 7 29 29 H 1.09002 * 109.46989 * 55.10971 * 11 8 7 30 30 H 1.08998 * 109.47394 * 295.10460 * 11 8 7 31 31 H 0.97001 * 119.99865 * 179.97438 * 15 14 12 32 32 H 1.09001 * 109.47446 * 264.53869 * 21 20 2 33 33 H 1.09005 * 109.47377 * 24.53419 * 21 20 2 34 34 H 1.08995 * 109.47500 * 144.53264 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5800 1.1981 -0.0005 5 6 4.2721 0.0000 -0.0005 6 17 6.0081 -0.0001 -0.0005 7 6 3.5801 -1.1979 -0.0005 8 6 4.3332 -2.5033 -0.0011 9 1 5.3762 -2.3212 0.2581 10 7 3.7354 -3.4139 0.9844 11 6 4.2563 -3.1357 -1.3922 12 6 5.1077 -4.3786 -1.4266 13 1 5.6492 -4.6869 -0.5445 14 6 5.1955 -5.1223 -2.5844 15 7 4.5365 -4.7466 -3.6587 16 14 6.2503 -6.6634 -2.6269 17 1 5.4298 -7.8359 -2.2307 18 1 6.7736 -6.8672 -4.0016 19 1 7.3860 -6.5120 -1.6823 20 6 2.1978 -1.1972 -0.0058 21 6 1.4439 -2.5020 -0.0115 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6578 2.1327 -0.0004 26 1 4.1197 2.1337 -0.0010 27 1 2.8748 -3.8092 0.6362 28 1 4.3858 -4.1388 1.2481 29 1 4.6199 -2.4255 -2.1348 30 1 3.2220 -3.3975 -1.6157 31 1 4.5985 -5.2695 -4.4734 32 1 1.3472 -2.8703 1.0099 33 1 0.4524 -2.3470 -0.4371 34 1 1.9865 -3.2326 -0.6113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260452220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -10.485665 kcal Electronic energy + Delta-G solvation = -16719.612883 eV Core-core repulsion = 14062.868200 eV Total energy + Delta-G solvation = -2656.744683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99265 -37.46650 -37.37471 -34.64860 -34.02937 -31.89728 -30.05560 -28.89230 -27.20754 -26.06029 -23.35884 -21.83534 -21.15200 -18.71431 -17.54272 -17.16932 -16.61192 -16.12497 -15.44813 -15.23684 -14.88510 -14.38636 -14.29618 -14.16286 -13.87013 -13.68598 -13.46326 -13.24065 -12.95990 -12.70967 -12.63562 -12.36806 -12.18614 -12.01315 -11.82797 -11.66100 -11.56090 -10.94131 -10.56907 -9.66580 -9.31813 -9.24386 -8.22163 -6.33463 0.27747 0.43202 1.28220 1.37644 1.38893 1.49429 2.37493 2.70134 3.10813 3.75168 3.87537 4.00046 4.17477 4.28714 4.36880 4.56249 4.64639 4.73993 4.82898 4.85037 4.90564 4.93523 5.04584 5.21345 5.29092 5.32501 5.40570 5.48186 5.66667 5.74457 5.77554 6.03506 6.16463 6.40186 6.73291 6.81508 7.35570 8.88726 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.007130 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.532781 B = 3926.392932 C = 4611.298594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.115 4.115 4 C -0.119 4.119 5 C -0.059 4.059 6 Cl -0.083 7.083 7 C -0.069 4.069 8 C 0.134 3.866 9 H 0.069 0.931 10 N -0.833 5.833 11 C 0.015 3.985 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.006 3.994 15 N -0.928 5.928 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.267 1.267 20 C -0.075 4.075 21 C -0.124 4.124 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.163 0.837 26 H 0.149 0.851 27 H 0.344 0.656 28 H 0.338 0.662 29 H -0.022 1.022 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 9.956 8.270 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.086 4.086 6 Cl -0.054 7.054 7 C -0.070 4.070 8 C 0.022 3.978 9 H 0.087 0.913 10 N -0.365 5.365 11 C -0.024 4.024 12 C -0.573 4.573 13 H 0.078 0.922 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.786 3.214 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.075 4.075 21 C -0.180 4.180 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.181 0.819 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.151 0.849 29 H -0.003 1.003 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.138 10.536 8.574 15.345 hybrid contribution 1.325 -1.589 -1.301 2.444 sum -5.812 8.947 7.273 12.912 Atomic orbital electron populations 1.20875 0.88552 1.04168 1.03162 1.20249 0.98044 0.91902 0.98844 1.21266 0.92727 0.98811 1.00465 1.21210 0.95114 0.96190 1.01221 1.21004 0.84022 0.95432 1.08132 1.98322 1.11286 1.98690 1.97111 1.19887 0.94323 0.94008 0.98828 1.20249 0.96383 0.89284 0.91907 0.91296 1.59491 1.09857 1.24167 1.43029 1.19640 0.96161 0.94315 0.92241 1.21510 1.28778 1.09432 0.97614 0.92170 1.25888 0.96959 1.01158 0.95268 1.70101 1.43571 1.40663 1.02463 0.85505 0.79105 0.79475 0.77311 1.19493 1.21166 1.19096 1.19719 0.91773 0.96629 0.99425 1.21180 0.99875 0.93835 1.03135 0.90454 0.90613 0.89334 0.81943 0.83298 0.83850 0.84944 1.00346 0.96963 0.92854 0.89203 0.89863 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.18 71.23 0.65 -1.44 16 2 C -0.09 -2.44 5.88 -19.86 -0.12 -2.56 16 3 C -0.11 -2.84 9.70 22.27 0.22 -2.62 16 4 C -0.12 -3.40 9.83 22.29 0.22 -3.18 16 5 C -0.06 -2.12 6.31 22.32 0.14 -1.98 16 6 Cl -0.08 -2.97 27.07 -2.72 -0.07 -3.04 16 7 C -0.07 -2.69 4.95 -19.84 -0.10 -2.79 16 8 C 0.13 5.77 2.61 44.17 0.12 5.89 16 9 H 0.07 3.14 6.36 -2.39 -0.02 3.12 16 10 N -0.83 -31.70 8.40 -171.79 -1.44 -33.15 16 11 C 0.01 0.77 4.33 29.85 0.13 0.90 16 12 C -0.54 -29.62 8.75 25.60 0.22 -29.40 16 13 H 0.06 3.19 7.30 -2.91 -0.02 3.17 16 14 C 0.01 0.32 5.46 84.66 0.46 0.78 16 15 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 16 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 C -0.07 -2.53 5.78 -19.87 -0.11 -2.65 16 21 C -0.12 -3.85 7.29 71.24 0.52 -3.33 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 1.36 6.60 -2.39 -0.02 1.34 16 24 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 25 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 26 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 27 H 0.34 12.60 4.85 -89.69 -0.44 12.16 16 28 H 0.34 12.68 8.48 -89.69 -0.76 11.92 16 29 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 30 H 0.01 0.67 5.59 -2.39 -0.01 0.66 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.09 2.52 7.32 -2.39 -0.02 2.51 16 33 H 0.08 2.13 6.40 -2.38 -0.02 2.12 16 34 H 0.06 2.27 3.65 -2.39 -0.01 2.26 16 Total: -1.00 -64.92 285.06 3.09 -61.83 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.06 Total: 26.34 kcal Atomic # 6 Polarization: -44.74 SS G_CDS: 2.35 Total: -42.39 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -1.16 Total: -88.70 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.07 Total: -3.04 kcal Total: -64.92 3.09 -61.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260452220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.349 kcal (2) G-P(sol) polarization free energy of solvation -64.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds