Wall clock time and date at job start Mon Mar 30 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.71032 * 125.38315 * 2 1 4 4 C 1.76083 * 90.39028 * 179.97438 * 3 2 1 5 5 C 1.39914 * 125.55598 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99833 * 180.02562 * 5 4 3 7 7 C 1.40246 * 120.00030 * 0.03569 * 5 4 3 8 8 N 1.30703 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46696 * 89.99859 * 9 7 5 11 11 H 1.48500 * 109.47130 * 209.99613 * 9 7 5 12 12 H 1.48500 * 109.47070 * 330.00039 * 9 7 5 13 13 N 1.31866 * 108.88900 * 359.77128 * 4 3 2 14 14 C 1.30455 * 115.69036 * 0.42360 * 13 4 3 15 15 C 1.50697 * 122.10535 * 179.81500 * 14 13 4 16 16 H 1.08992 * 109.48113 * 164.68843 * 15 14 13 17 17 C 1.53096 * 109.48058 * 284.71313 * 15 14 13 18 18 C 1.53178 * 109.16278 * 177.60246 * 17 15 14 19 19 C 1.53178 * 109.03511 * 303.01594 * 18 17 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 17 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 H 1.08993 * 109.47238 * 270.02817 * 1 2 3 23 23 H 1.09002 * 109.46434 * 30.03078 * 1 2 3 24 24 H 1.09000 * 109.47173 * 150.02365 * 1 2 3 25 25 H 0.96991 * 119.99827 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.52155 * 57.69455 * 17 15 14 27 27 H 1.08996 * 109.57060 * 297.53713 * 17 15 14 28 28 H 1.09002 * 109.54068 * 183.15004 * 18 17 15 29 29 H 1.08992 * 109.61712 * 62.93144 * 18 17 15 30 30 H 1.09000 * 109.52619 * 297.07706 * 19 18 17 31 31 H 1.08998 * 109.51869 * 176.88944 * 19 18 17 32 32 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 33 33 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4974 1.3944 0.0000 4 6 3.9399 0.3846 0.0008 5 6 5.2592 0.8505 0.0006 6 1 6.0798 0.1484 0.0007 7 6 5.5160 2.2293 0.0006 8 7 4.5228 3.0790 0.0001 9 14 7.2774 2.8513 0.0011 10 1 7.7445 3.0159 -1.3988 11 1 7.3401 4.1596 0.7009 12 1 8.1476 1.8729 0.7015 13 7 3.5742 -0.8823 0.0060 14 6 2.2878 -1.0996 0.0005 15 6 1.7107 -2.4916 0.0012 16 1 0.6548 -2.4472 0.2675 17 6 1.8603 -3.1070 -1.3927 18 6 1.3262 -4.5425 -1.3685 19 6 2.0797 -5.3379 -0.2980 20 6 1.9216 -4.6364 1.0535 21 8 2.4090 -3.2968 0.9535 22 1 -0.3633 0.0005 1.0276 23 1 -0.3632 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 4.7004 4.0325 0.0004 26 1 2.9127 -3.1146 -1.6765 27 1 1.2927 -2.5193 -2.1141 28 1 1.4808 -5.0054 -2.3432 29 1 0.2618 -4.5330 -1.1342 30 1 3.1365 -5.3906 -0.5597 31 1 1.6682 -6.3453 -0.2359 32 1 0.8683 -4.6201 1.3336 33 1 2.4910 -5.1747 1.8112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260455318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:15 Heat of formation + Delta-G solvation = -45.125152 kcal Electronic energy + Delta-G solvation = -16640.367408 eV Core-core repulsion = 13984.164350 eV Total energy + Delta-G solvation = -2656.203058 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.15067 -37.20968 -34.20583 -33.20227 -31.65682 -30.21042 -27.92557 -25.31248 -23.76667 -22.98576 -21.58032 -19.96180 -18.24290 -17.14949 -16.23009 -15.57737 -14.98624 -14.60937 -14.35095 -14.23219 -13.67781 -13.20024 -12.84526 -12.29544 -12.13966 -12.12894 -11.81108 -11.73520 -11.56451 -11.24765 -10.94994 -10.79849 -10.64997 -10.48245 -10.30419 -9.96450 -9.59233 -9.20214 -8.91477 -7.62619 -7.60311 -7.08759 -7.04189 -4.66568 2.50362 2.95244 3.00133 3.03827 3.53160 3.71344 3.92674 4.07557 4.56412 5.05766 5.07414 5.14642 5.23985 5.52693 5.56733 5.69367 5.84233 5.91284 5.99636 6.13088 6.19654 6.25726 6.31182 6.35538 6.41941 6.43193 6.75257 6.78190 6.85930 7.30752 7.61905 7.85506 7.96949 8.35737 8.46802 9.80832 9.89047 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030097 B = 0.006487 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.100277 B = 4315.289453 C = 4924.042198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.433 4.433 3 S 0.110 5.890 4 C 0.203 3.797 5 C -0.373 4.373 6 H 0.103 0.897 7 C 0.055 3.945 8 N -0.782 5.782 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.257 1.257 13 N -0.576 5.576 14 C 0.119 3.881 15 C 0.172 3.828 16 H 0.055 0.945 17 C -0.140 4.140 18 C -0.120 4.120 19 C -0.155 4.155 20 C 0.058 3.942 21 O -0.359 6.359 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.298 0.702 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 -6.256 -1.172 7.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.558 4.558 3 S 0.369 5.631 4 C -0.050 4.050 5 C -0.415 4.415 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.411 5.411 9 Si 0.764 3.236 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.181 1.181 13 N -0.297 5.297 14 C -0.022 4.022 15 C 0.112 3.888 16 H 0.073 0.927 17 C -0.179 4.179 18 C -0.158 4.158 19 C -0.192 4.192 20 C -0.020 4.020 21 O -0.278 6.278 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.735 -5.221 -1.050 6.505 hybrid contribution 0.013 -0.693 -0.184 0.717 sum -3.722 -5.914 -1.234 7.096 Atomic orbital electron populations 1.19646 0.90609 0.99839 0.99477 1.24690 1.00200 1.00264 1.30682 1.84144 0.98103 1.07281 1.73527 1.23911 0.96617 0.88658 0.95863 1.18994 0.91255 0.91875 1.39396 0.87937 1.26174 1.01265 0.96433 0.92866 1.68787 1.33489 1.04982 1.33827 0.85725 0.79677 0.78603 0.79562 1.18978 1.19768 1.18051 1.67237 1.13838 1.17629 1.30997 1.19117 0.89520 0.92170 1.01418 1.20423 0.93494 0.87090 0.87781 0.92676 1.22102 1.02876 0.94946 0.97941 1.21598 0.99313 0.96069 0.98793 1.22178 1.01692 0.98783 0.96573 1.22496 0.98466 0.84608 0.96390 1.88157 1.58931 1.20736 1.59935 0.94086 0.93637 0.93738 0.88964 0.90489 0.91433 0.91937 0.92321 0.91039 0.91654 0.94061 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.73 9.74 36.01 0.35 -0.38 16 2 C -0.43 -10.59 6.38 -35.50 -0.23 -10.82 16 3 S 0.11 2.86 20.15 -107.50 -2.17 0.69 16 4 C 0.20 5.69 7.14 -16.91 -0.12 5.57 16 5 C -0.37 -9.90 9.45 -38.20 -0.36 -10.26 16 6 H 0.10 2.65 7.85 -52.49 -0.41 2.24 16 7 C 0.05 1.31 5.50 -17.28 -0.10 1.21 16 8 N -0.78 -19.04 10.67 55.56 0.59 -18.45 16 9 Si 0.94 17.79 29.56 -169.99 -5.03 12.77 16 10 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 11 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 12 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 13 N -0.58 -16.14 10.57 -9.33 -0.10 -16.24 16 14 C 0.12 3.01 5.64 -84.38 -0.48 2.54 16 15 C 0.17 3.60 2.78 -27.83 -0.08 3.53 16 16 H 0.06 1.08 6.57 -51.93 -0.34 0.73 16 17 C -0.14 -2.55 5.40 -26.59 -0.14 -2.70 16 18 C -0.12 -1.69 6.03 -26.55 -0.16 -1.85 16 19 C -0.15 -2.10 6.14 -26.59 -0.16 -2.26 16 20 C 0.06 0.89 6.84 37.21 0.25 1.15 16 21 O -0.36 -7.65 10.32 -35.23 -0.36 -8.01 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.79 7.02 -51.93 -0.36 0.42 16 25 H 0.30 6.47 8.29 -40.82 -0.34 6.13 16 26 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 284.77 15.07 4.29 4.29 Total: -1.00 -29.60 284.77 -8.47 -38.07 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -4.48 Total: 1.16 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.22 Total: -14.27 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.49 Total: -34.69 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.36 Total: -8.01 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.17 Total: 0.69 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.60 -8.47 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260455318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.058 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds