Wall clock time and date at job start Mon Mar 30 2020 05:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 S 1.71032 * 125.38315 * 2 1 4 4 C 1.76083 * 90.39028 * 179.97438 * 3 2 1 5 5 C 1.39914 * 125.55598 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99833 * 180.02562 * 5 4 3 7 7 C 1.40246 * 120.00030 * 0.03569 * 5 4 3 8 8 N 1.30703 * 120.00016 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46696 * 89.99859 * 9 7 5 11 11 H 1.48500 * 109.47130 * 209.99613 * 9 7 5 12 12 H 1.48500 * 109.47070 * 330.00039 * 9 7 5 13 13 N 1.31866 * 108.88900 * 359.77128 * 4 3 2 14 14 C 1.30455 * 115.69036 * 0.42360 * 13 4 3 15 15 C 1.50697 * 122.10535 * 179.81500 * 14 13 4 16 16 H 1.08992 * 109.48113 * 164.68843 * 15 14 13 17 17 C 1.53096 * 109.48058 * 284.71313 * 15 14 13 18 18 C 1.53178 * 109.16278 * 177.60246 * 17 15 14 19 19 C 1.53178 * 109.03511 * 303.01594 * 18 17 15 20 20 C 1.53093 * 109.16255 * 56.98447 * 19 18 17 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 18 22 22 H 1.08993 * 109.47238 * 270.02817 * 1 2 3 23 23 H 1.09002 * 109.46434 * 30.03078 * 1 2 3 24 24 H 1.09000 * 109.47173 * 150.02365 * 1 2 3 25 25 H 0.96991 * 119.99827 * 179.97438 * 8 7 5 26 26 H 1.08999 * 109.52155 * 57.69455 * 17 15 14 27 27 H 1.08996 * 109.57060 * 297.53713 * 17 15 14 28 28 H 1.09002 * 109.54068 * 183.15004 * 18 17 15 29 29 H 1.08992 * 109.61712 * 62.93144 * 18 17 15 30 30 H 1.09000 * 109.52619 * 297.07706 * 19 18 17 31 31 H 1.08998 * 109.51869 * 176.88944 * 19 18 17 32 32 H 1.09002 * 109.48198 * 62.37219 * 20 19 18 33 33 H 1.08999 * 109.48029 * 182.39833 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.4974 1.3944 0.0000 4 6 3.9399 0.3846 0.0008 5 6 5.2592 0.8505 0.0006 6 1 6.0798 0.1484 0.0007 7 6 5.5160 2.2293 0.0006 8 7 4.5228 3.0790 0.0001 9 14 7.2774 2.8513 0.0011 10 1 7.7445 3.0159 -1.3988 11 1 7.3401 4.1596 0.7009 12 1 8.1476 1.8729 0.7015 13 7 3.5742 -0.8823 0.0060 14 6 2.2878 -1.0996 0.0005 15 6 1.7107 -2.4916 0.0012 16 1 0.6548 -2.4472 0.2675 17 6 1.8603 -3.1070 -1.3927 18 6 1.3262 -4.5425 -1.3685 19 6 2.0797 -5.3379 -0.2980 20 6 1.9216 -4.6364 1.0535 21 8 2.4090 -3.2968 0.9535 22 1 -0.3633 0.0005 1.0276 23 1 -0.3632 0.8898 -0.5143 24 1 -0.3633 -0.8902 -0.5135 25 1 4.7004 4.0325 0.0004 26 1 2.9127 -3.1146 -1.6765 27 1 1.2927 -2.5193 -2.1141 28 1 1.4808 -5.0054 -2.3432 29 1 0.2618 -4.5330 -1.1342 30 1 3.1365 -5.3906 -0.5597 31 1 1.6682 -6.3453 -0.2359 32 1 0.8683 -4.6201 1.3336 33 1 2.4910 -5.1747 1.8112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260455318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:14 Heat of formation + Delta-G solvation = -63.797643 kcal Electronic energy + Delta-G solvation = -16641.177108 eV Core-core repulsion = 13984.164350 eV Total energy + Delta-G solvation = -2657.012758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.70308 -38.97070 -36.08543 -34.52471 -33.37227 -31.68274 -29.80651 -26.88304 -25.22902 -24.53904 -23.43139 -21.22869 -20.04139 -19.10564 -17.97399 -16.96626 -16.75107 -16.21228 -15.86560 -15.48311 -15.11902 -14.87854 -14.41028 -13.94272 -13.65501 -13.58783 -13.50987 -13.45703 -13.17693 -12.82293 -12.41198 -12.19227 -12.02713 -12.00058 -11.87244 -11.37249 -11.28591 -10.96615 -10.35168 -9.65128 -9.57819 -9.07254 -8.87474 -6.65387 0.61577 1.38392 1.47183 1.54390 1.56671 1.99228 2.18471 2.23952 3.00378 3.29554 3.83814 3.94678 3.97799 4.10414 4.14929 4.32684 4.52998 4.62577 4.68014 4.71001 4.84149 4.87231 4.93551 4.97162 5.03892 5.09596 5.13301 5.22137 5.37998 5.48513 5.77726 5.94688 6.40961 6.47074 6.49897 7.89128 8.03848 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030097 B = 0.006487 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.100277 B = 4315.289453 C = 4924.042198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 C -0.441 4.441 3 S 0.089 5.911 4 C 0.167 3.833 5 C -0.404 4.404 6 H 0.097 0.903 7 C 0.021 3.979 8 N -0.800 5.800 9 Si 1.018 2.982 10 H -0.255 1.255 11 H -0.256 1.256 12 H -0.258 1.258 13 N -0.611 5.611 14 C 0.095 3.905 15 C 0.174 3.826 16 H 0.072 0.928 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.150 4.150 20 C 0.047 3.953 21 O -0.400 6.400 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.311 0.689 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -6.918 -1.351 8.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.566 4.566 3 S 0.348 5.652 4 C -0.085 4.085 5 C -0.447 4.447 6 H 0.114 0.886 7 C -0.199 4.199 8 N -0.429 5.429 9 Si 0.836 3.164 10 H -0.179 1.179 11 H -0.179 1.179 12 H -0.181 1.181 13 N -0.334 5.334 14 C -0.044 4.044 15 C 0.114 3.886 16 H 0.090 0.910 17 C -0.174 4.174 18 C -0.150 4.150 19 C -0.187 4.187 20 C -0.029 4.029 21 O -0.320 6.320 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.124 0.876 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.423 -5.902 -1.231 7.478 hybrid contribution 0.183 -0.492 -0.097 0.534 sum -4.240 -6.395 -1.328 7.787 Atomic orbital electron populations 1.19723 0.87334 1.01458 1.00687 1.25204 1.02440 0.99138 1.29856 1.83896 0.98261 1.08524 1.74531 1.24395 0.97925 0.89350 0.96861 1.19317 0.90822 0.93525 1.41012 0.88550 1.27186 1.06022 0.95383 0.91337 1.68821 1.35675 1.05940 1.32471 0.84637 0.73406 0.78332 0.80066 1.17936 1.17924 1.18135 1.67281 1.15674 1.17877 1.32544 1.19845 0.88942 0.94849 1.00782 1.20440 0.93580 0.85287 0.89263 0.91019 1.22025 1.01093 0.97986 0.96267 1.21598 1.00302 0.92965 1.00171 1.22162 1.01014 1.00428 0.95133 1.22847 0.99792 0.82177 0.98095 1.88082 1.60160 1.23502 1.60215 0.92930 0.92623 0.91449 0.87576 0.93839 0.91367 0.89932 0.90100 0.92682 0.87822 0.92004 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.27 9.74 71.24 0.69 -0.57 16 2 C -0.44 -21.83 6.38 24.91 0.16 -21.67 16 3 S 0.09 4.76 20.15 -56.49 -1.14 3.63 16 4 C 0.17 9.80 7.14 85.09 0.61 10.40 16 5 C -0.40 -22.31 9.45 23.16 0.22 -22.09 16 6 H 0.10 5.23 7.85 -2.91 -0.02 5.20 16 7 C 0.02 0.99 5.50 85.35 0.47 1.46 16 8 N -0.80 -39.26 10.67 21.88 0.23 -39.03 16 9 Si 1.02 35.94 29.56 68.60 2.03 37.97 16 10 H -0.26 -8.59 7.11 99.48 0.71 -7.89 16 11 H -0.26 -8.27 7.11 99.48 0.71 -7.56 16 12 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 13 N -0.61 -35.81 10.57 -183.44 -1.94 -37.75 16 14 C 0.10 4.94 5.64 41.99 0.24 5.18 16 15 C 0.17 7.25 2.78 29.88 0.08 7.33 16 16 H 0.07 2.68 6.57 -2.39 -0.02 2.66 16 17 C -0.14 -4.86 5.40 30.69 0.17 -4.70 16 18 C -0.11 -2.85 6.03 30.71 0.19 -2.67 16 19 C -0.15 -3.67 6.14 30.68 0.19 -3.49 16 20 C 0.05 1.36 6.84 72.01 0.49 1.86 16 21 O -0.40 -17.06 10.32 -148.98 -1.54 -18.60 16 22 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 25 H 0.31 13.34 8.29 -92.71 -0.77 12.58 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -67.36 284.77 2.25 -65.11 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.10 Total: 17.62 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.50 Total: -28.95 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.71 Total: -76.78 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.54 Total: -18.60 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.14 Total: 3.63 kcal Total: -67.36 2.25 -65.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260455318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -67.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds