Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.98524 * 2 1 4 4 C 1.38191 * 120.01312 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.00793 * 179.97438 * 4 3 2 6 6 C 1.38376 * 119.98809 * 359.97438 * 4 3 2 7 7 Cl 1.73597 * 120.01865 * 180.02562 * 6 4 3 8 8 C 1.38334 * 119.97225 * 0.02562 * 6 4 3 9 9 C 1.50697 * 120.00859 * 179.97438 * 8 6 4 10 10 H 1.08996 * 109.47188 * 40.00224 * 9 8 6 11 11 N 1.46905 * 109.47125 * 160.00002 * 9 8 6 12 12 C 1.53001 * 109.47213 * 279.99846 * 9 8 6 13 13 C 1.50698 * 109.47176 * 174.99984 * 12 9 8 14 14 H 1.07997 * 119.99944 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00026 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00059 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00309 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46510 * 60.00020 * 17 15 13 19 19 H 1.48495 * 109.47276 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47189 * 300.00718 * 17 15 13 21 21 C 1.38213 * 119.98622 * 180.28095 * 2 1 3 22 22 H 1.09003 * 109.47327 * 89.99619 * 1 2 3 23 23 H 1.08998 * 109.47190 * 209.99776 * 1 2 3 24 24 H 1.09001 * 109.47080 * 330.00261 * 1 2 3 25 25 H 1.08001 * 119.99679 * 0.04257 * 3 2 1 26 26 H 1.09005 * 109.46894 * 270.01525 * 5 4 3 27 27 H 1.08993 * 109.47451 * 30.01929 * 5 4 3 28 28 H 1.09006 * 109.46836 * 150.02208 * 5 4 3 29 29 H 1.00901 * 110.99869 * 296.04907 * 11 9 8 30 30 H 1.00896 * 110.99543 * 60.00030 * 11 9 8 31 31 H 1.08997 * 109.47065 * 295.00050 * 12 9 8 32 32 H 1.09001 * 109.46723 * 55.00082 * 12 9 8 33 33 H 0.97003 * 120.00786 * 180.02562 * 16 15 13 34 34 H 1.08001 * 119.99629 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1976 0.0000 4 6 3.5799 1.1982 -0.0005 5 6 4.3330 2.5036 -0.0011 6 6 4.2722 0.0000 -0.0005 7 17 6.0081 0.0000 -0.0005 8 6 3.5802 -1.1978 -0.0005 9 6 4.3333 -2.5032 -0.0011 10 1 5.1969 -2.4247 0.6591 11 7 3.4508 -3.5778 0.4727 12 6 4.8045 -2.8195 -1.4220 13 6 5.6609 -4.0593 -1.4028 14 1 5.8505 -4.5703 -0.4705 15 6 6.2033 -4.5407 -2.5754 16 7 5.9736 -3.9176 -3.7106 17 14 7.2654 -6.0771 -2.5517 18 1 6.4729 -7.2186 -2.0278 19 1 7.7227 -6.3842 -3.9308 20 1 8.4443 -5.8505 -1.6776 21 6 2.1978 -1.1971 -0.0059 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6577 2.1327 0.0007 26 1 4.5139 2.8182 -1.0290 27 1 3.7441 3.2631 0.5130 28 1 5.2859 2.3736 0.5121 29 1 3.1775 -3.4247 1.4319 30 1 2.6420 -3.6706 -0.1233 31 1 3.9390 -2.9856 -2.0633 32 1 5.3864 -1.9819 -1.8066 33 1 6.3549 -4.2564 -4.5357 34 1 1.6575 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260473966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = -21.598095 kcal Electronic energy + Delta-G solvation = -16432.845648 eV Core-core repulsion = 13775.619093 eV Total energy + Delta-G solvation = -2657.226554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88037 -37.40102 -37.29682 -34.66476 -34.20011 -31.92118 -30.32310 -28.18168 -27.50737 -26.25140 -23.60733 -21.69189 -20.82495 -18.51123 -17.71523 -17.35024 -16.70016 -16.16509 -15.71166 -15.21500 -14.77044 -14.51493 -14.22484 -14.15027 -14.09190 -13.52967 -13.32976 -13.20379 -12.95691 -12.73931 -12.59786 -12.33330 -12.32206 -12.03907 -11.98374 -11.58378 -11.41442 -11.15910 -10.49356 -9.62977 -9.46347 -9.34513 -8.10609 -6.16532 0.20079 0.30957 1.31095 1.41229 1.44558 1.52057 2.46341 2.61190 3.22315 3.72812 3.74234 3.85411 3.92424 4.31227 4.33795 4.52134 4.56810 4.63172 4.73833 4.75820 4.84086 4.88529 5.00707 5.15459 5.26621 5.33262 5.41561 5.50234 5.57743 5.70379 5.87410 5.94258 6.29576 6.47321 6.77785 6.96373 7.49157 9.01126 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.006620 C = 0.005756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.118272 B = 4228.309595 C = 4863.576127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.075 4.075 3 C -0.122 4.122 4 C -0.079 4.079 5 C -0.115 4.115 6 C -0.063 4.063 7 Cl -0.077 7.077 8 C -0.106 4.106 9 C 0.145 3.855 10 H 0.070 0.930 11 N -0.827 5.827 12 C 0.052 3.948 13 C -0.505 4.505 14 H 0.058 0.942 15 C -0.004 4.004 16 N -0.938 5.938 17 Si 0.959 3.041 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.135 4.135 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.161 0.839 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.341 0.659 30 H 0.340 0.660 31 H -0.017 1.017 32 H 0.002 0.998 33 H 0.259 0.741 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 12.303 9.432 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.171 4.171 6 C -0.090 4.090 7 Cl -0.048 7.048 8 C -0.109 4.109 9 C 0.033 3.967 10 H 0.088 0.912 11 N -0.357 5.357 12 C 0.014 3.986 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.200 4.200 16 N -0.580 5.580 17 Si 0.784 3.216 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.153 4.153 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.178 0.822 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.002 0.998 32 H 0.020 0.980 33 H 0.068 0.932 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.356 11.779 9.129 17.596 hybrid contribution 0.377 -0.236 -0.363 0.574 sum -8.979 11.543 8.766 17.050 Atomic orbital electron populations 1.20850 0.88224 1.04221 1.03312 1.20331 0.98083 0.92197 0.96924 1.21176 0.91950 0.99087 1.01811 1.20121 0.94760 0.94234 0.98894 1.20897 1.00201 0.92712 1.03336 1.20915 0.84312 0.95044 1.08721 1.98341 1.10961 1.98685 1.96847 1.21089 0.95388 0.95960 0.98496 1.20345 0.93886 0.84256 0.98217 0.91180 1.58682 1.23202 1.47270 1.06565 1.18855 0.94288 0.95508 0.89901 1.21427 1.28937 1.10461 0.93468 0.92416 1.25869 0.98336 1.00492 0.95336 1.70098 1.47072 1.41936 0.98894 0.85594 0.79162 0.79956 0.76842 1.19461 1.21118 1.19626 1.20994 0.91994 0.99405 1.02935 0.90334 0.90662 0.89341 0.82151 0.90446 0.88525 0.91564 0.84523 0.84574 0.99828 0.97975 0.93210 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 2 C -0.08 -1.84 5.88 -19.86 -0.12 -1.95 16 3 C -0.12 -2.87 9.36 22.26 0.21 -2.66 16 4 C -0.08 -2.23 5.88 -19.84 -0.12 -2.35 16 5 C -0.12 -2.51 9.62 71.24 0.69 -1.83 16 6 C -0.06 -2.22 6.30 22.33 0.14 -2.08 16 7 Cl -0.08 -2.88 25.00 -2.72 -0.07 -2.95 16 8 C -0.11 -3.92 5.08 -19.84 -0.10 -4.02 16 9 C 0.15 6.22 2.38 44.17 0.10 6.32 16 10 H 0.07 3.18 7.35 -2.39 -0.02 3.16 16 11 N -0.83 -31.03 8.43 -171.80 -1.45 -32.48 16 12 C 0.05 2.81 4.54 29.85 0.14 2.94 16 13 C -0.50 -29.65 8.84 25.60 0.23 -29.42 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 16 N -0.94 -58.95 13.29 21.45 0.28 -58.66 16 17 Si 0.96 46.53 29.54 68.60 2.03 48.55 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.13 -4.09 8.91 22.27 0.20 -3.90 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 24 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 25 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.10 1.50 8.09 -2.39 -0.02 1.48 16 28 H 0.07 1.53 6.90 -2.38 -0.02 1.52 16 29 H 0.34 10.51 9.06 -89.69 -0.81 9.69 16 30 H 0.34 12.03 7.28 -89.70 -0.65 11.38 16 31 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.00 0.12 7.30 -2.39 -0.02 0.10 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.13 3.68 6.25 -2.91 -0.02 3.66 16 Total: -1.00 -69.63 296.77 2.99 -66.64 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.35 Total: 18.69 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 2.54 Total: -39.80 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -1.16 Total: -91.14 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.07 Total: -2.95 kcal Total: -69.63 2.99 -66.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260473966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.046 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds