Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 119.99164 * 2 1 4 4 C 1.38333 * 119.98366 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 120.01288 * 179.97438 * 4 3 2 6 6 C 1.38374 * 119.97253 * 359.72180 * 4 3 2 7 7 C 1.50705 * 120.00525 * 180.27615 * 6 4 3 8 8 C 1.38189 * 119.98832 * 0.55269 * 6 4 3 9 9 C 1.50693 * 119.99454 * 179.72363 * 8 6 4 10 10 H 1.08996 * 109.47398 * 354.25103 * 9 8 6 11 11 C 1.50707 * 109.47271 * 114.24593 * 9 8 6 12 12 H 1.08006 * 119.99367 * 5.06453 * 11 9 8 13 13 C 1.37872 * 120.00423 * 185.05452 * 11 9 8 14 14 N 1.31517 * 120.00420 * 186.04014 * 13 11 9 15 15 Si 1.86806 * 119.99765 * 6.04963 * 13 11 9 16 16 H 1.48502 * 109.46527 * 269.99399 * 15 13 11 17 17 H 1.48496 * 109.47018 * 29.99306 * 15 13 11 18 18 H 1.48494 * 109.46886 * 149.99828 * 15 13 11 19 19 C 1.52998 * 109.47544 * 234.24699 * 9 8 6 20 20 N 1.46896 * 109.46966 * 64.80610 * 19 9 8 21 21 C 1.38212 * 119.99218 * 180.02562 * 2 1 3 22 22 H 1.09006 * 109.46672 * 269.97772 * 1 2 3 23 23 H 1.09000 * 109.47375 * 29.96913 * 1 2 3 24 24 H 1.08995 * 109.47703 * 149.97789 * 1 2 3 25 25 H 1.07994 * 120.00923 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.46714 * 264.93690 * 7 6 4 27 27 H 1.08995 * 109.47044 * 24.93744 * 7 6 4 28 28 H 1.08996 * 109.46757 * 144.93787 * 7 6 4 29 29 H 0.96999 * 119.99280 * 354.88503 * 14 13 11 30 30 H 1.08998 * 109.47715 * 184.80763 * 19 9 8 31 31 H 1.09000 * 109.46842 * 304.80842 * 19 9 8 32 32 H 1.00905 * 110.99824 * 56.04875 * 20 19 9 33 33 H 1.00897 * 111.00515 * 180.02562 * 20 19 9 34 34 H 1.08003 * 119.98908 * 359.95185 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1971 -0.0005 5 17 4.4499 2.7002 -0.0012 6 6 4.2725 -0.0017 0.0047 7 6 5.7795 -0.0027 0.0105 8 6 3.5806 -1.1979 -0.0010 9 6 4.3331 -2.5035 -0.0015 10 1 5.4008 -2.3074 -0.0999 11 6 4.0736 -3.2335 1.2911 12 1 3.3652 -2.8359 2.0029 13 6 4.7402 -4.4089 1.5650 14 7 4.4288 -5.1076 2.6348 15 14 6.0859 -5.0088 0.4166 16 1 5.4919 -5.8797 -0.6294 17 1 6.7448 -3.8431 -0.2254 18 1 7.0903 -5.7805 1.1916 19 6 3.8621 -3.3632 -1.1762 20 7 4.2188 -2.7040 -2.4395 21 6 2.1979 -1.1970 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5133 24 1 -0.3634 -0.8897 -0.5141 25 1 1.6580 2.1325 0.0004 26 1 6.1466 -0.0960 -1.0116 27 1 6.1418 0.9298 0.4430 28 1 6.1399 -0.8428 0.6040 29 1 3.7834 -4.7601 3.2700 30 1 4.3434 -4.3400 -1.1276 31 1 2.7805 -3.4881 -1.1243 32 1 5.2097 -2.5186 -2.4834 33 1 3.9179 -3.2523 -3.2312 34 1 1.6576 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -4.000455 kcal Electronic energy + Delta-G solvation = -16840.580622 eV Core-core repulsion = 14184.117158 eV Total energy + Delta-G solvation = -2656.463463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.33905 -36.27651 -35.48454 -33.20626 -32.49005 -30.73206 -28.93926 -27.82146 -24.44057 -23.27397 -22.78784 -20.61818 -19.02820 -17.67616 -15.85092 -15.45590 -14.97217 -14.68733 -14.38846 -13.81672 -13.41145 -13.24625 -12.97242 -12.50596 -12.47135 -12.32367 -11.86765 -11.73051 -11.58351 -11.31949 -11.18399 -10.87318 -10.46263 -10.39372 -10.24790 -10.06787 -9.70197 -8.92601 -8.55755 -8.05012 -7.94499 -7.81884 -6.51923 -4.20752 1.78423 1.94324 2.56165 3.23402 3.30467 3.45838 4.23746 4.35381 5.10620 5.19428 5.28919 5.35929 5.46794 5.63903 5.75254 5.84149 5.87187 6.06596 6.11933 6.13833 6.23400 6.28439 6.35565 6.58760 6.68037 6.72188 6.81063 6.98665 7.08965 7.44388 7.53042 7.66987 7.92011 8.03429 8.28425 8.78990 9.49546 10.85640 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.007831 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.739936 B = 3574.819751 C = 3986.113060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.031 4.031 5 Cl -0.093 7.093 6 C -0.087 4.087 7 C -0.116 4.116 8 C 0.012 3.988 9 C 0.045 3.955 10 H 0.043 0.957 11 C -0.584 4.584 12 H 0.061 0.939 13 C 0.029 3.971 14 N -0.908 5.908 15 Si 1.054 2.946 16 H -0.286 1.286 17 H -0.279 1.279 18 H -0.288 1.288 19 C 0.060 3.940 20 N -0.852 5.852 21 C -0.100 4.100 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.269 0.731 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.331 0.669 33 H 0.327 0.673 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 9.519 -7.674 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 C -0.155 4.155 4 C -0.057 4.057 5 Cl -0.064 7.064 6 C -0.088 4.088 7 C -0.173 4.173 8 C 0.011 3.989 9 C 0.025 3.975 10 H 0.061 0.939 11 C -0.623 4.623 12 H 0.079 0.921 13 C -0.176 4.176 14 N -0.542 5.542 15 Si 0.883 3.117 16 H -0.213 1.213 17 H -0.205 1.205 18 H -0.215 1.215 19 C -0.070 4.070 20 N -0.380 5.380 21 C -0.119 4.119 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.358 8.982 -7.664 11.885 hybrid contribution -0.530 0.517 0.173 0.760 sum -1.888 9.499 -7.491 12.244 Atomic orbital electron populations 1.20704 0.91461 1.02227 1.01936 1.19701 0.95628 0.92646 1.00873 1.20555 0.91664 0.97883 1.05378 1.20644 0.91968 0.85571 1.07546 1.98297 1.77447 1.33431 1.97205 1.19541 0.96364 0.90892 1.01998 1.20846 0.91265 1.02941 1.02217 1.19796 0.93198 0.94400 0.91483 1.18475 0.95472 0.88958 0.94563 0.93901 1.21994 1.27642 1.10059 1.02569 0.92105 1.25771 0.99183 0.93330 0.99314 1.70798 1.33776 1.37676 1.11998 0.83865 0.76452 0.76092 0.75248 1.21315 1.20504 1.21461 1.22401 1.00631 0.95242 0.88756 1.58911 1.21353 1.53233 1.04540 1.20916 0.94127 0.96977 0.99831 0.91556 0.92069 0.91646 0.86281 0.91502 0.91901 0.90317 0.92049 0.96026 0.91502 0.85750 0.86238 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.01 0.36 -1.05 16 2 C -0.09 -1.50 5.88 -104.63 -0.62 -2.12 16 3 C -0.14 -2.27 9.49 -39.55 -0.38 -2.65 16 4 C -0.03 -0.55 6.31 -39.50 -0.25 -0.80 16 5 Cl -0.09 -1.42 27.21 -51.86 -1.41 -2.83 16 6 C -0.09 -1.68 5.88 -104.59 -0.62 -2.30 16 7 C -0.12 -2.03 8.84 36.01 0.32 -1.72 16 8 C 0.01 0.24 4.46 -104.63 -0.47 -0.22 16 9 C 0.04 1.00 1.40 -92.92 -0.13 0.87 16 10 H 0.04 0.97 4.21 -51.93 -0.22 0.75 16 11 C -0.58 -15.53 8.69 -34.44 -0.30 -15.83 16 12 H 0.06 1.78 7.92 -52.48 -0.42 1.36 16 13 C 0.03 0.80 5.43 -17.82 -0.10 0.70 16 14 N -0.91 -27.02 13.70 55.43 0.76 -26.26 16 15 Si 1.05 24.33 25.35 -169.99 -4.31 20.02 16 16 H -0.29 -6.31 6.75 56.52 0.38 -5.93 16 17 H -0.28 -5.89 6.37 56.52 0.36 -5.53 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.06 1.21 5.62 -3.83 -0.02 1.19 16 20 N -0.85 -14.47 9.33 -10.37 -0.10 -14.56 16 21 C -0.10 -1.97 8.48 -39.58 -0.34 -2.31 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.00 6.70 -51.93 -0.35 0.65 16 28 H 0.08 1.48 6.52 -51.93 -0.34 1.14 16 29 H 0.27 8.01 8.72 -40.82 -0.36 7.66 16 30 H 0.02 0.46 4.38 -51.93 -0.23 0.24 16 31 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 32 H 0.33 5.31 8.99 -39.29 -0.35 4.96 16 33 H 0.33 4.71 9.08 -39.29 -0.36 4.35 16 34 H 0.12 2.41 7.22 -52.48 -0.38 2.04 16 LS Contribution 287.46 15.07 4.33 4.33 Total: -1.00 -28.59 287.46 -7.57 -36.16 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.32 Total: 9.37 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -2.53 Total: -26.23 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.66 Total: -40.82 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.31 Total: 20.02 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.41 Total: -2.83 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.59 -7.57 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.161 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds