Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 119.99164 * 2 1 4 4 C 1.38333 * 119.98366 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 120.01288 * 179.97438 * 4 3 2 6 6 C 1.38374 * 119.97253 * 359.72180 * 4 3 2 7 7 C 1.50705 * 120.00525 * 180.27615 * 6 4 3 8 8 C 1.38189 * 119.98832 * 0.55269 * 6 4 3 9 9 C 1.50693 * 119.99454 * 179.72363 * 8 6 4 10 10 H 1.08996 * 109.47398 * 354.25103 * 9 8 6 11 11 C 1.50707 * 109.47271 * 114.24593 * 9 8 6 12 12 H 1.08006 * 119.99367 * 5.06453 * 11 9 8 13 13 C 1.37872 * 120.00423 * 185.05452 * 11 9 8 14 14 N 1.31517 * 120.00420 * 186.04014 * 13 11 9 15 15 Si 1.86806 * 119.99765 * 6.04963 * 13 11 9 16 16 H 1.48502 * 109.46527 * 269.99399 * 15 13 11 17 17 H 1.48496 * 109.47018 * 29.99306 * 15 13 11 18 18 H 1.48494 * 109.46886 * 149.99828 * 15 13 11 19 19 C 1.52998 * 109.47544 * 234.24699 * 9 8 6 20 20 N 1.46896 * 109.46966 * 64.80610 * 19 9 8 21 21 C 1.38212 * 119.99218 * 180.02562 * 2 1 3 22 22 H 1.09006 * 109.46672 * 269.97772 * 1 2 3 23 23 H 1.09000 * 109.47375 * 29.96913 * 1 2 3 24 24 H 1.08995 * 109.47703 * 149.97789 * 1 2 3 25 25 H 1.07994 * 120.00923 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.46714 * 264.93690 * 7 6 4 27 27 H 1.08995 * 109.47044 * 24.93744 * 7 6 4 28 28 H 1.08996 * 109.46757 * 144.93787 * 7 6 4 29 29 H 0.96999 * 119.99280 * 354.88503 * 14 13 11 30 30 H 1.08998 * 109.47715 * 184.80763 * 19 9 8 31 31 H 1.09000 * 109.46842 * 304.80842 * 19 9 8 32 32 H 1.00905 * 110.99824 * 56.04875 * 20 19 9 33 33 H 1.00897 * 111.00515 * 180.02562 * 20 19 9 34 34 H 1.08003 * 119.98908 * 359.95185 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1971 -0.0005 5 17 4.4499 2.7002 -0.0012 6 6 4.2725 -0.0017 0.0047 7 6 5.7795 -0.0027 0.0105 8 6 3.5806 -1.1979 -0.0010 9 6 4.3331 -2.5035 -0.0015 10 1 5.4008 -2.3074 -0.0999 11 6 4.0736 -3.2335 1.2911 12 1 3.3652 -2.8359 2.0029 13 6 4.7402 -4.4089 1.5650 14 7 4.4288 -5.1076 2.6348 15 14 6.0859 -5.0088 0.4166 16 1 5.4919 -5.8797 -0.6294 17 1 6.7448 -3.8431 -0.2254 18 1 7.0903 -5.7805 1.1916 19 6 3.8621 -3.3632 -1.1762 20 7 4.2188 -2.7040 -2.4395 21 6 2.1979 -1.1970 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5133 24 1 -0.3634 -0.8897 -0.5141 25 1 1.6580 2.1325 0.0004 26 1 6.1466 -0.0960 -1.0116 27 1 6.1418 0.9298 0.4430 28 1 6.1399 -0.8428 0.6040 29 1 3.7834 -4.7601 3.2700 30 1 4.3434 -4.3400 -1.1276 31 1 2.7805 -3.4881 -1.1243 32 1 5.2097 -2.5186 -2.4834 33 1 3.9179 -3.2523 -3.2312 34 1 1.6576 -2.1322 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520677.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -22.214157 kcal Electronic energy + Delta-G solvation = -16841.370427 eV Core-core repulsion = 14184.117158 eV Total energy + Delta-G solvation = -2657.253269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78087 -37.67585 -36.99304 -34.61159 -34.43220 -32.25945 -30.20564 -29.48696 -25.75180 -25.16136 -24.30785 -22.11775 -20.62044 -19.67476 -17.34373 -16.85980 -16.44693 -16.27224 -15.86039 -15.23419 -15.08589 -14.93701 -14.22710 -14.07715 -13.84788 -13.66759 -13.30841 -13.14052 -13.06884 -12.86645 -12.71326 -12.47163 -11.94063 -11.81909 -11.80679 -11.61342 -11.34177 -10.94781 -10.64716 -9.50529 -9.40740 -9.24166 -8.68819 -6.40843 0.36148 0.52230 1.22080 1.37432 1.48107 1.63962 2.43594 2.79577 3.06625 3.83528 3.91281 3.97039 4.14315 4.26670 4.37983 4.45729 4.60516 4.69595 4.77393 4.80402 4.82890 4.85158 5.01094 5.06791 5.17113 5.33105 5.37958 5.43538 5.66504 5.79674 5.98619 6.02831 6.11468 6.32755 6.53201 6.74845 7.38319 8.64349 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.007831 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.739936 B = 3574.819751 C = 3986.113060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.087 4.087 3 C -0.132 4.132 4 C -0.037 4.037 5 Cl -0.069 7.069 6 C -0.104 4.104 7 C -0.113 4.113 8 C -0.015 4.015 9 C 0.048 3.952 10 H 0.046 0.954 11 C -0.577 4.577 12 H 0.018 0.982 13 C -0.023 4.023 14 N -0.945 5.945 15 Si 1.089 2.911 16 H -0.267 1.267 17 H -0.246 1.246 18 H -0.294 1.294 19 C 0.070 3.930 20 N -0.845 5.845 21 C -0.121 4.121 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.149 0.851 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.252 0.748 30 H 0.014 0.986 31 H 0.056 0.944 32 H 0.341 0.659 33 H 0.345 0.655 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 11.400 -9.808 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.064 4.064 5 Cl -0.040 7.040 6 C -0.104 4.104 7 C -0.169 4.169 8 C -0.015 4.015 9 C 0.029 3.971 10 H 0.064 0.936 11 C -0.616 4.616 12 H 0.036 0.964 13 C -0.220 4.220 14 N -0.581 5.581 15 Si 0.911 3.089 16 H -0.193 1.193 17 H -0.170 1.170 18 H -0.221 1.221 19 C -0.061 4.061 20 N -0.376 5.376 21 C -0.140 4.140 22 H 0.093 0.907 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.166 0.834 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.153 10.893 -9.825 14.715 hybrid contribution -0.689 0.085 0.868 1.112 sum -1.842 10.978 -8.957 14.288 Atomic orbital electron populations 1.20776 0.88737 1.03749 1.02897 1.20075 0.97647 0.91777 0.99188 1.20934 0.91510 0.98866 1.03786 1.20793 0.92658 0.86132 1.06771 1.98302 1.77057 1.31630 1.97055 1.19721 0.97274 0.91035 1.02410 1.20835 0.90319 1.02794 1.02973 1.19733 0.93752 0.94268 0.93777 1.18314 0.95925 0.89866 0.92979 0.93624 1.22127 1.25705 1.10051 1.03669 0.96386 1.27169 1.01010 0.93899 0.99901 1.70935 1.34983 1.38852 1.13367 0.83474 0.74047 0.77183 0.74171 1.19285 1.16973 1.22129 1.22060 0.99865 0.94467 0.89680 1.58739 1.22174 1.52991 1.03656 1.20959 0.94043 0.97648 1.01302 0.90745 0.89428 0.91305 0.83350 0.89885 0.90586 0.92203 0.93915 0.96835 0.92533 0.84691 0.84174 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.53 10.01 71.24 0.71 -1.82 16 2 C -0.09 -2.81 5.88 -19.87 -0.12 -2.93 16 3 C -0.13 -4.07 9.49 22.29 0.21 -3.86 16 4 C -0.04 -1.23 6.31 22.32 0.14 -1.09 16 5 Cl -0.07 -1.93 27.21 -2.72 -0.07 -2.01 16 6 C -0.10 -3.88 5.88 -19.84 -0.12 -3.99 16 7 C -0.11 -3.77 8.84 71.24 0.63 -3.14 16 8 C -0.01 -0.62 4.46 -19.87 -0.09 -0.71 16 9 C 0.05 2.16 1.40 -12.29 -0.02 2.15 16 10 H 0.05 2.01 4.21 -2.39 -0.01 2.00 16 11 C -0.58 -31.78 8.69 25.60 0.22 -31.56 16 12 H 0.02 1.11 7.92 -2.91 -0.02 1.09 16 13 C -0.02 -1.28 5.43 84.65 0.46 -0.82 16 14 N -0.94 -58.57 13.70 21.45 0.29 -58.28 16 15 Si 1.09 48.64 25.35 68.60 1.74 50.38 16 16 H -0.27 -11.07 6.75 99.48 0.67 -10.40 16 17 H -0.25 -9.56 6.37 99.48 0.63 -8.92 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 C 0.07 2.79 5.62 86.30 0.48 3.28 16 20 N -0.85 -26.77 9.33 -186.73 -1.74 -28.51 16 21 C -0.12 -4.77 8.48 22.27 0.19 -4.58 16 22 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 24 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 25 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.08 2.28 6.70 -2.39 -0.02 2.26 16 28 H 0.06 2.20 6.52 -2.39 -0.02 2.19 16 29 H 0.25 15.93 8.72 -92.71 -0.81 15.12 16 30 H 0.01 0.57 4.38 -2.39 -0.01 0.56 16 31 H 0.06 2.35 6.93 -2.39 -0.02 2.33 16 32 H 0.34 9.91 8.99 -89.69 -0.81 9.11 16 33 H 0.35 9.01 9.08 -89.70 -0.81 8.19 16 34 H 0.11 4.39 7.22 -2.91 -0.02 4.37 16 Total: -1.00 -63.64 287.46 2.30 -61.34 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.63 Total: 26.16 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 2.71 Total: -49.08 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.45 Total: -86.79 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 1.74 Total: 50.38 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.07 Total: -2.01 kcal Total: -63.64 2.30 -61.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520677.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.125 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds