Wall clock time and date at job start Mon Mar 30 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34471 * 126.16735 * 2 1 4 4 C 1.30260 * 108.70269 * 179.97438 * 3 2 1 5 5 C 1.50693 * 125.61947 * 179.97438 * 4 3 2 6 6 H 1.09008 * 108.82971 * 178.55623 * 5 4 3 7 7 C 1.52333 * 108.86833 * 60.03014 * 5 4 3 8 8 C 1.54260 * 112.47388 * 239.39221 * 7 5 4 9 9 S 1.83763 * 102.67096 * 335.32779 * 8 7 5 10 10 C 1.54259 * 108.75745 * 297.02072 * 5 4 3 11 11 O 1.33972 * 108.75796 * 0.22929 * 4 3 2 12 12 C 1.34329 * 126.16383 * 179.97438 * 2 1 3 13 13 C 1.50704 * 126.44261 * 0.06071 * 12 2 1 14 14 C 1.50695 * 109.47359 * 89.99776 * 13 12 2 15 15 H 1.08000 * 119.99668 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00365 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99911 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46894 * 89.99750 * 18 16 14 20 20 H 1.48502 * 109.47216 * 209.99935 * 18 16 14 21 21 H 1.48497 * 109.46803 * 330.00227 * 18 16 14 22 22 H 1.09000 * 109.46962 * 90.02912 * 1 2 3 23 23 H 1.09001 * 109.47636 * 210.03229 * 1 2 3 24 24 H 1.09000 * 109.47307 * 330.02739 * 1 2 3 25 25 H 1.09002 * 108.86808 * 0.14161 * 7 5 4 26 26 H 1.09004 * 108.87242 * 118.64722 * 7 5 4 27 27 H 1.09007 * 110.78707 * 93.67041 * 8 7 5 28 28 H 1.09001 * 110.79108 * 217.12161 * 8 7 5 29 29 H 1.08996 * 110.78994 * 263.54312 * 10 5 4 30 30 H 1.09002 * 110.78619 * 26.81145 * 10 5 4 31 31 H 1.09001 * 109.47070 * 210.00059 * 13 12 2 32 32 H 1.08998 * 109.47109 * 329.99684 * 13 12 2 33 33 H 0.97001 * 120.00099 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7479 1.5998 0.0002 6 1 5.6487 0.9865 0.0268 7 6 4.7090 2.4722 1.2483 8 6 4.6753 3.9779 0.9145 9 16 5.4449 4.0384 -0.7532 10 6 4.7462 2.4274 -1.3016 11 8 3.5733 -0.6447 -0.0042 12 6 2.2996 -1.0845 0.0005 13 6 1.8491 -2.5226 -0.0002 14 6 1.7001 -3.0018 -1.4211 15 1 1.9110 -2.3320 -2.2417 16 6 1.2956 -4.2954 -1.6737 17 7 1.1661 -4.7137 -2.9138 18 14 0.9316 -5.4541 -0.2543 19 1 -0.5010 -5.3430 0.1204 20 1 1.2289 -6.8496 -0.6658 21 1 1.7775 -5.0906 0.9108 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3634 0.8902 0.5134 25 1 3.8208 2.2196 1.8275 26 1 5.5930 2.2646 1.8513 27 1 3.6490 4.3438 0.8808 28 1 5.2664 4.5467 1.6322 29 1 5.3845 1.9653 -2.0546 30 1 3.7315 2.5512 -1.6799 31 1 2.5894 -3.1355 0.5142 32 1 0.8908 -2.6034 0.5129 33 1 0.8811 -5.6237 -3.0914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602846.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:36 Heat of formation + Delta-G solvation = 5.454569 kcal Electronic energy + Delta-G solvation = -16361.188318 eV Core-core repulsion = 13707.178561 eV Total energy + Delta-G solvation = -2654.009756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.79288 -36.77623 -34.59281 -33.55404 -31.63971 -30.02343 -28.91098 -26.58494 -25.11090 -22.86252 -21.68402 -20.18921 -19.76517 -17.14940 -16.92245 -16.42169 -15.85611 -15.24124 -14.56846 -14.33046 -13.99722 -13.41473 -13.25385 -12.76367 -12.57693 -12.42341 -12.09780 -12.04141 -11.92386 -11.84648 -11.60041 -10.97574 -10.92984 -10.74799 -10.45037 -10.23952 -10.08113 -9.88597 -9.58515 -8.74708 -7.87937 -7.76581 -6.23041 -4.25504 1.71605 1.95045 2.24727 3.12389 3.17344 3.20763 3.26585 3.27669 4.14525 4.26109 4.45942 4.69019 4.75495 4.90613 5.05348 5.08218 5.30687 5.46513 5.54545 5.59339 5.63640 5.82139 5.86350 6.03794 6.13444 6.32302 6.42928 6.51136 6.69482 6.94574 7.01990 7.41733 8.27457 8.30664 8.78799 9.33421 10.89410 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040049 B = 0.004876 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.981958 B = 5740.515206 C = 5893.527607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.048 4.048 3 N -0.466 5.466 4 C 0.144 3.856 5 C 0.018 3.982 6 H 0.106 0.894 7 C -0.116 4.116 8 C -0.061 4.061 9 S -0.296 6.296 10 C -0.054 4.054 11 O -0.198 6.198 12 C 0.030 3.970 13 C 0.061 3.939 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.076 3.924 17 N -0.891 5.891 18 Si 0.875 3.125 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.264 1.264 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 12.761 8.736 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.168 4.168 3 N -0.197 5.197 4 C -0.063 4.063 5 C -0.003 4.003 6 H 0.125 0.875 7 C -0.155 4.155 8 C -0.209 4.209 9 S -0.069 6.069 10 C -0.202 4.202 11 O -0.084 6.084 12 C -0.024 4.024 13 C 0.024 3.976 14 C -0.561 4.561 15 H 0.093 0.907 16 C -0.127 4.127 17 N -0.529 5.529 18 Si 0.702 3.298 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.189 1.189 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.836 14.040 8.055 17.206 hybrid contribution -0.732 -2.291 0.983 2.598 sum 5.104 11.749 9.038 15.677 Atomic orbital electron populations 1.19944 0.86852 1.01952 1.02702 1.21291 0.97749 0.87389 1.10357 1.70068 1.00254 1.31973 1.17420 1.25511 0.94883 0.79848 1.06091 1.20060 0.92294 0.93642 0.94338 0.87530 1.22003 1.04566 0.92122 0.96809 1.24101 1.03758 0.98449 0.94562 1.87901 1.68191 1.31192 1.19650 1.24264 1.05337 0.92099 0.98532 1.84396 1.31360 1.22973 1.69697 1.23991 0.79242 0.99190 0.99968 1.18424 0.96548 0.82766 0.99890 1.20773 1.47477 0.98168 0.89701 0.90686 1.24916 0.94459 0.97624 0.95712 1.69878 1.46345 1.17950 1.18714 0.86841 0.79399 0.80631 0.82954 1.19714 1.20813 1.18854 0.91001 0.90924 0.91988 0.89529 0.89765 0.88751 0.87614 0.87066 0.87848 0.94402 0.93138 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.22 36.00 0.37 -0.61 16 2 C -0.05 -0.98 7.11 -82.82 -0.59 -1.57 16 3 N -0.47 -8.81 11.04 -7.36 -0.08 -8.89 16 4 C 0.14 2.53 6.33 -12.95 -0.08 2.45 16 5 C 0.02 0.23 3.11 -91.46 -0.28 -0.05 16 6 H 0.11 1.24 8.14 -51.92 -0.42 0.81 16 7 C -0.12 -1.23 5.98 -26.41 -0.16 -1.39 16 8 C -0.06 -0.59 7.44 37.82 0.28 -0.31 16 9 S -0.30 -3.52 23.26 -107.50 -2.50 -6.02 16 10 C -0.05 -0.68 6.91 37.82 0.26 -0.42 16 11 O -0.20 -4.12 10.78 5.36 0.06 -4.06 16 12 C 0.03 0.65 6.58 -35.69 -0.23 0.41 16 13 C 0.06 1.42 4.38 -29.04 -0.13 1.30 16 14 C -0.52 -14.47 9.65 -34.44 -0.33 -14.80 16 15 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 18 Si 0.88 20.22 27.47 -169.99 -4.67 15.55 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.07 1.19 7.17 -51.93 -0.37 0.81 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.09 1.03 7.43 -51.93 -0.39 0.64 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.47 7.72 -51.93 -0.40 1.07 16 31 H 0.04 0.87 7.20 -51.93 -0.37 0.50 16 32 H 0.05 1.10 6.60 -51.93 -0.34 0.76 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -30.54 289.83 -7.47 -38.01 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.42 Total: -0.32 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.99 Total: -12.97 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.69 Total: -34.56 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.06 Total: -4.06 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.50 Total: -6.02 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.54 -7.47 -38.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602846.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.463 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds