Wall clock time and date at job start Mon Mar 30 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34471 * 126.16735 * 2 1 4 4 C 1.30260 * 108.70269 * 179.97438 * 3 2 1 5 5 C 1.50693 * 125.61947 * 179.97438 * 4 3 2 6 6 H 1.09008 * 108.82971 * 178.55623 * 5 4 3 7 7 C 1.52333 * 108.86833 * 60.03014 * 5 4 3 8 8 C 1.54260 * 112.47388 * 239.39221 * 7 5 4 9 9 S 1.83763 * 102.67096 * 335.32779 * 8 7 5 10 10 C 1.54259 * 108.75745 * 297.02072 * 5 4 3 11 11 O 1.33972 * 108.75796 * 0.22929 * 4 3 2 12 12 C 1.34329 * 126.16383 * 179.97438 * 2 1 3 13 13 C 1.50704 * 126.44261 * 0.06071 * 12 2 1 14 14 C 1.50695 * 109.47359 * 89.99776 * 13 12 2 15 15 H 1.08000 * 119.99668 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00365 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 119.99911 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46894 * 89.99750 * 18 16 14 20 20 H 1.48502 * 109.47216 * 209.99935 * 18 16 14 21 21 H 1.48497 * 109.46803 * 330.00227 * 18 16 14 22 22 H 1.09000 * 109.46962 * 90.02912 * 1 2 3 23 23 H 1.09001 * 109.47636 * 210.03229 * 1 2 3 24 24 H 1.09000 * 109.47307 * 330.02739 * 1 2 3 25 25 H 1.09002 * 108.86808 * 0.14161 * 7 5 4 26 26 H 1.09004 * 108.87242 * 118.64722 * 7 5 4 27 27 H 1.09007 * 110.78707 * 93.67041 * 8 7 5 28 28 H 1.09001 * 110.79108 * 217.12161 * 8 7 5 29 29 H 1.08996 * 110.78994 * 263.54312 * 10 5 4 30 30 H 1.09002 * 110.78619 * 26.81145 * 10 5 4 31 31 H 1.09001 * 109.47070 * 210.00059 * 13 12 2 32 32 H 1.08998 * 109.47109 * 329.99684 * 13 12 2 33 33 H 0.97001 * 120.00099 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6946 0.0006 5 6 4.7479 1.5998 0.0002 6 1 5.6487 0.9865 0.0268 7 6 4.7090 2.4722 1.2483 8 6 4.6753 3.9779 0.9145 9 16 5.4449 4.0384 -0.7532 10 6 4.7462 2.4274 -1.3016 11 8 3.5733 -0.6447 -0.0042 12 6 2.2996 -1.0845 0.0005 13 6 1.8491 -2.5226 -0.0002 14 6 1.7001 -3.0018 -1.4211 15 1 1.9110 -2.3320 -2.2417 16 6 1.2956 -4.2954 -1.6737 17 7 1.1661 -4.7137 -2.9138 18 14 0.9316 -5.4541 -0.2543 19 1 -0.5010 -5.3430 0.1204 20 1 1.2289 -6.8496 -0.6658 21 1 1.7775 -5.0906 0.9108 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5143 24 1 -0.3634 0.8902 0.5134 25 1 3.8208 2.2196 1.8275 26 1 5.5930 2.2646 1.8513 27 1 3.6490 4.3438 0.8808 28 1 5.2664 4.5467 1.6322 29 1 5.3845 1.9653 -2.0546 30 1 3.7315 2.5512 -1.6799 31 1 2.5894 -3.1355 0.5142 32 1 0.8908 -2.6034 0.5129 33 1 0.8811 -5.6237 -3.0914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602846.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:35 Heat of formation + Delta-G solvation = -14.698832 kcal Electronic energy + Delta-G solvation = -16362.062235 eV Core-core repulsion = 13707.178561 eV Total energy + Delta-G solvation = -2654.883673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.32060 -37.82571 -36.16860 -35.45333 -33.37604 -31.17602 -30.40688 -27.98615 -26.45532 -24.44666 -23.14856 -21.71948 -20.98404 -19.18019 -18.07839 -17.70180 -17.27881 -16.72596 -16.06452 -15.68644 -15.20744 -14.92779 -14.44179 -14.31994 -14.15988 -13.90598 -13.59752 -13.12877 -13.05618 -12.96957 -12.89766 -12.64411 -12.50239 -12.07136 -11.90814 -11.81027 -11.74761 -11.42441 -11.05365 -10.84865 -9.36781 -8.80067 -8.36233 -6.45799 0.50450 0.78155 1.22578 1.37507 1.39439 1.50367 1.66408 1.77718 2.31398 2.90103 2.97879 3.38436 3.71361 3.77775 3.98022 4.03346 4.12966 4.14736 4.40442 4.51302 4.61784 4.69008 4.74193 4.78181 4.87593 4.94174 4.96595 5.02346 5.10010 5.29430 5.40002 5.50540 6.12260 6.57450 6.76734 7.17738 8.80248 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.040049 B = 0.004876 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.981958 B = 5740.515206 C = 5893.527607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.045 4.045 3 N -0.481 5.481 4 C 0.164 3.836 5 C 0.016 3.984 6 H 0.124 0.876 7 C -0.111 4.111 8 C -0.051 4.051 9 S -0.307 6.307 10 C -0.054 4.054 11 O -0.215 6.215 12 C -0.016 4.016 13 C 0.070 3.930 14 C -0.533 4.533 15 H 0.022 0.978 16 C 0.017 3.983 17 N -0.943 5.943 18 Si 0.951 3.049 19 H -0.254 1.254 20 H -0.282 1.282 21 H -0.243 1.243 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 13.444 11.293 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.164 4.164 3 N -0.211 5.211 4 C -0.044 4.044 5 C -0.005 4.005 6 H 0.142 0.858 7 C -0.151 4.151 8 C -0.198 4.198 9 S -0.080 6.080 10 C -0.203 4.203 11 O -0.103 6.103 12 C -0.068 4.068 13 C 0.032 3.968 14 C -0.571 4.571 15 H 0.040 0.960 16 C -0.182 4.182 17 N -0.582 5.582 18 Si 0.773 3.227 19 H -0.179 1.179 20 H -0.207 1.207 21 H -0.166 1.166 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.110 0.890 28 H 0.153 0.847 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.214 14.752 10.620 19.210 hybrid contribution -0.777 -2.333 0.095 2.461 sum 5.436 12.419 10.715 17.280 Atomic orbital electron populations 1.20055 0.85107 1.03665 1.02704 1.21780 0.99081 0.87257 1.08300 1.70142 1.00720 1.31434 1.18792 1.26631 0.96084 0.79186 1.02530 1.20485 0.90822 0.93549 0.95671 0.85800 1.22000 1.05448 0.92120 0.95490 1.24204 1.04015 0.98148 0.93482 1.87982 1.68118 1.30368 1.21523 1.24167 1.04458 0.92997 0.98644 1.84370 1.31171 1.24497 1.70244 1.23800 0.80106 0.99137 1.03806 1.18212 0.97658 0.83901 0.96985 1.20929 1.47468 0.97818 0.90848 0.95994 1.25937 0.93872 0.99499 0.98864 1.70041 1.47823 1.18765 1.21610 0.85650 0.80341 0.77416 0.79317 1.17868 1.20723 1.16616 0.91722 0.89999 0.89511 0.90541 0.86968 0.88982 0.84713 0.86334 0.89923 0.94038 0.91081 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.95 10.22 71.23 0.73 -1.22 16 2 C -0.05 -1.82 7.11 41.26 0.29 -1.53 16 3 N -0.48 -17.91 11.04 -291.98 -3.22 -21.14 16 4 C 0.16 5.66 6.33 88.34 0.56 6.22 16 5 C 0.02 0.39 3.11 -11.34 -0.04 0.35 16 6 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 7 C -0.11 -2.05 5.98 30.80 0.18 -1.87 16 8 C -0.05 -0.84 7.44 72.41 0.54 -0.30 16 9 S -0.31 -6.71 23.26 -56.49 -1.31 -8.02 16 10 C -0.05 -1.31 6.91 72.41 0.50 -0.81 16 11 O -0.22 -8.99 10.78 -3.75 -0.04 -9.03 16 12 C -0.02 -0.69 6.58 24.79 0.16 -0.53 16 13 C 0.07 3.24 4.38 29.10 0.13 3.37 16 14 C -0.53 -30.38 9.65 25.60 0.25 -30.14 16 15 H 0.02 1.43 7.98 -2.91 -0.02 1.40 16 16 C 0.02 0.94 5.47 84.65 0.46 1.40 16 17 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 18 Si 0.95 41.17 27.47 68.60 1.88 43.05 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 22 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 23 H 0.08 2.56 7.17 -2.39 -0.02 2.54 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.08 1.62 7.43 -2.39 -0.02 1.61 16 26 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.08 2.36 7.72 -2.39 -0.02 2.34 16 31 H 0.04 1.87 7.20 -2.39 -0.02 1.86 16 32 H 0.07 2.98 6.60 -2.39 -0.02 2.96 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.21 289.83 2.42 -65.79 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.05 Total: 11.76 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.77 Total: -25.06 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.92 Total: -78.48 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.04 Total: -9.03 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.05 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.31 Total: -8.02 kcal Total: -68.21 2.42 -65.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602846.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.091 kcal (2) G-P(sol) polarization free energy of solvation -68.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds