Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38264 * 119.98769 * 2 1 4 4 C 1.38192 * 120.01322 * 180.02562 * 3 2 1 5 5 C 1.38370 * 119.99028 * 359.97181 * 4 3 2 6 6 Cl 1.73595 * 120.01705 * 179.72298 * 5 4 3 7 7 C 1.38338 * 119.97155 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.00642 * 179.97438 * 7 5 4 9 9 C 1.38224 * 119.98856 * 179.97438 * 2 1 3 10 10 C 1.50698 * 119.98787 * 0.02562 * 9 2 1 11 11 H 1.09002 * 109.46915 * 271.62242 * 10 9 2 12 12 N 1.46903 * 109.47447 * 31.63154 * 10 9 2 13 13 C 1.53007 * 109.46850 * 151.63039 * 10 9 2 14 14 C 1.50697 * 109.46875 * 192.89461 * 13 10 9 15 15 H 1.07996 * 120.00678 * 359.97438 * 14 13 10 16 16 C 1.37884 * 119.99494 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00419 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99729 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47470 * 89.99835 * 18 16 14 20 20 H 1.48505 * 109.47320 * 209.99933 * 18 16 14 21 21 H 1.48497 * 109.47230 * 329.99802 * 18 16 14 22 22 H 1.08999 * 109.47460 * 114.33563 * 1 2 3 23 23 H 1.08998 * 109.47061 * 234.33854 * 1 2 3 24 24 H 1.09006 * 109.47092 * 354.33124 * 1 2 3 25 25 H 1.08002 * 119.99368 * 359.96912 * 3 2 1 26 26 H 1.08001 * 120.00743 * 179.97438 * 4 3 2 27 27 H 1.08996 * 109.46882 * 115.82994 * 8 7 5 28 28 H 1.09004 * 109.46682 * 235.82654 * 8 7 5 29 29 H 1.08995 * 109.47105 * 355.83069 * 8 7 5 30 30 H 1.00901 * 110.99293 * 280.14279 * 12 10 9 31 31 H 1.00899 * 111.00065 * 44.09701 * 12 10 9 32 32 H 1.09002 * 109.47029 * 312.89623 * 13 10 9 33 33 H 1.08997 * 109.47158 * 72.89451 * 13 10 9 34 34 H 0.96998 * 119.99966 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5800 1.1982 -0.0005 5 6 4.2721 0.0000 -0.0005 6 17 6.0081 0.0000 -0.0084 7 6 3.5802 -1.1979 -0.0004 8 6 4.3332 -2.5032 -0.0010 9 6 2.1979 -1.1972 0.0005 10 6 1.4438 -2.5020 0.0005 11 1 1.2365 -2.8017 1.0278 12 7 0.1781 -2.3361 -0.7264 13 6 2.2880 -3.5788 -0.6844 14 6 1.4296 -4.7842 -0.9691 15 1 0.3865 -4.7828 -0.6892 16 6 1.9763 -5.8895 -1.5860 17 7 3.2466 -5.8916 -1.9264 18 14 0.9122 -7.3835 -1.9396 19 1 0.2970 -7.2461 -3.2842 20 1 1.7507 -8.6087 -1.9019 21 1 -0.1570 -7.4837 -0.9140 22 1 -0.3634 -0.4235 -0.9363 23 1 -0.3633 -0.5991 0.8349 24 1 -0.3633 1.0227 0.1015 25 1 1.6577 2.1327 -0.0005 26 1 4.1197 2.1336 -0.0010 27 1 4.1273 -3.0418 0.9240 28 1 4.0144 -3.1062 -0.8512 29 1 5.4025 -2.3057 -0.0760 30 1 -0.5173 -1.8928 -0.1449 31 1 0.3173 -1.8192 -1.5816 32 1 2.6866 -3.1872 -1.6203 33 1 3.1115 -3.8654 -0.0304 34 1 3.6311 -6.6690 -2.3608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261082564.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = 48.799969 kcal Electronic energy + Delta-G solvation = -16843.121563 eV Core-core repulsion = 14188.947698 eV Total energy + Delta-G solvation = -2654.173865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32936 -37.84010 -36.84606 -35.39362 -34.22390 -31.54455 -30.28640 -29.02709 -27.31112 -25.69459 -22.89711 -21.75898 -21.60470 -18.44391 -17.59609 -16.93811 -16.84495 -16.27559 -15.83399 -15.25166 -14.88393 -14.58155 -14.27642 -14.11027 -13.76801 -13.67958 -13.45492 -13.02177 -12.86294 -12.61153 -12.54799 -12.27126 -12.19513 -12.00983 -11.80726 -11.55538 -11.27811 -10.44532 -10.18757 -9.57042 -9.36465 -9.00989 -8.01713 -6.03088 0.19229 0.34348 1.20337 1.45304 1.45790 1.56354 2.52819 2.61886 3.31879 3.77681 3.84599 3.92124 4.04876 4.18920 4.34366 4.54044 4.60002 4.64863 4.73529 4.76151 4.83455 4.95542 5.06991 5.17381 5.28310 5.44134 5.47552 5.61336 5.66064 5.81956 5.94057 5.97693 6.41456 6.64363 6.90283 7.11281 7.61166 9.09575 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.023779 B = 0.007034 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.244335 B = 3979.808852 C = 5053.157270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.112 4.112 4 C -0.112 4.112 5 C -0.057 4.057 6 Cl -0.075 7.075 7 C -0.072 4.072 8 C -0.147 4.147 9 C -0.117 4.117 10 C 0.148 3.852 11 H 0.069 0.931 12 N -0.836 5.836 13 C 0.017 3.983 14 C -0.496 4.496 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.953 3.047 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.268 1.268 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.350 0.650 31 H 0.339 0.661 32 H -0.010 1.010 33 H 0.042 0.958 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 16.004 4.908 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.083 4.083 6 Cl -0.047 7.047 7 C -0.073 4.073 8 C -0.202 4.202 9 C -0.119 4.119 10 C 0.036 3.964 11 H 0.087 0.913 12 N -0.373 5.373 13 C -0.020 4.020 14 C -0.534 4.534 15 H 0.083 0.917 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.780 3.220 19 H -0.208 1.208 20 H -0.217 1.217 21 H -0.193 1.193 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.181 0.819 26 H 0.171 0.829 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.008 0.992 33 H 0.059 0.941 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.099 15.092 4.801 15.976 hybrid contribution 0.428 -0.196 -0.250 0.533 sum -1.671 14.896 4.551 15.665 Atomic orbital electron populations 1.21433 0.89383 1.04454 1.03156 1.20150 0.97678 0.91918 0.98834 1.21299 0.92989 0.98404 1.00247 1.21256 0.94874 0.96473 1.00443 1.20979 0.84190 0.95037 1.08122 1.98319 1.10599 1.98633 1.97110 1.19752 0.93812 0.94537 0.99195 1.21992 0.99272 0.94721 1.04233 1.20923 0.93046 0.97379 1.00576 1.20182 0.89181 0.89949 0.97073 0.91282 1.58804 1.08827 1.60665 1.08973 1.20046 0.95088 0.92433 0.94418 1.21703 0.97005 0.99020 1.35713 0.91661 1.25798 0.96041 1.01573 0.96890 1.70073 1.13364 1.30702 1.43930 0.85626 0.78793 0.79208 0.78340 1.20841 1.21695 1.19251 0.89576 0.90445 0.89302 0.81860 0.82871 0.91745 0.87880 0.92246 0.83026 0.84558 0.99250 0.94072 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.86 71.24 0.56 -1.93 16 2 C -0.09 -2.26 5.72 -19.86 -0.11 -2.37 16 3 C -0.11 -2.50 9.67 22.26 0.22 -2.29 16 4 C -0.11 -2.78 9.83 22.29 0.22 -2.56 16 5 C -0.06 -1.77 6.31 22.33 0.14 -1.63 16 6 Cl -0.08 -2.21 27.01 -2.72 -0.07 -2.29 16 7 C -0.07 -2.60 5.74 -19.84 -0.11 -2.71 16 8 C -0.15 -5.95 7.73 71.24 0.55 -5.40 16 9 C -0.12 -4.02 5.39 -19.87 -0.11 -4.13 16 10 C 0.15 5.79 3.10 44.17 0.14 5.93 16 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 12 N -0.84 -28.89 7.10 -171.79 -1.22 -30.11 16 13 C 0.02 0.83 2.72 29.85 0.08 0.92 16 14 C -0.50 -27.55 8.61 25.60 0.22 -27.33 16 15 H 0.07 3.59 7.21 -2.91 -0.02 3.57 16 16 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 17 N -0.94 -56.65 13.29 21.45 0.28 -56.37 16 18 Si 0.95 45.55 29.54 68.60 2.03 47.58 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H 0.09 1.71 5.33 -2.39 -0.01 1.70 16 23 H 0.08 1.50 6.83 -2.39 -0.02 1.48 16 24 H 0.09 1.23 7.89 -2.38 -0.02 1.21 16 25 H 0.16 2.39 7.95 -2.91 -0.02 2.37 16 26 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 27 H 0.06 2.63 7.18 -2.39 -0.02 2.62 16 28 H 0.10 4.99 4.05 -2.87 -0.01 4.98 16 29 H 0.06 2.24 6.18 -2.39 -0.01 2.22 16 30 H 0.35 9.46 5.27 -89.69 -0.47 8.98 16 31 H 0.34 11.31 7.19 -89.69 -0.64 10.66 16 32 H -0.01 -0.58 6.82 -2.39 -0.02 -0.60 16 33 H 0.04 2.16 4.34 -2.39 -0.01 2.15 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -64.25 277.15 3.30 -60.95 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.03 Total: 23.71 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 2.25 Total: -43.48 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -0.93 Total: -86.48 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.07 Total: -2.29 kcal Total: -64.25 3.30 -60.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261082564.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.755 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds