Wall clock time and date at job start Mon Mar 30 2020 07:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46996 * 2 1 4 4 H 1.08998 * 109.46960 * 54.84812 * 3 2 1 5 5 C 1.50697 * 109.46616 * 174.84573 * 3 2 1 6 6 H 1.07999 * 120.00226 * 120.00507 * 5 3 2 7 7 C 1.37877 * 120.00419 * 299.99588 * 5 3 2 8 8 N 1.31521 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00438 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46948 * 89.99793 * 9 7 5 11 11 H 1.48493 * 109.47178 * 210.00243 * 9 7 5 12 12 H 1.48494 * 109.46734 * 330.00240 * 9 7 5 13 13 N 1.46490 * 109.46888 * 294.84469 * 3 2 1 14 14 C 1.39758 * 119.99711 * 157.83090 * 13 3 2 15 15 C 1.38875 * 120.07882 * 355.11340 * 14 13 3 16 16 C 1.38116 * 119.93683 * 179.70163 * 15 14 13 17 17 C 1.38288 * 120.09284 * 0.57138 * 16 15 14 18 18 C 1.38274 * 120.15861 * 359.72485 * 17 16 15 19 19 C 1.50699 * 119.96861 * 179.97438 * 18 17 16 20 20 C 1.38205 * 120.05822 * 359.97438 * 18 17 16 21 21 Cl 1.73602 * 120.04439 * 179.97438 * 20 18 17 22 22 H 1.08994 * 109.47359 * 175.44052 * 1 2 3 23 23 H 1.08996 * 109.46928 * 55.43218 * 1 2 3 24 24 H 1.09006 * 109.46900 * 295.43782 * 1 2 3 25 25 H 1.09001 * 109.47122 * 120.00045 * 2 1 3 26 26 H 1.08998 * 109.47067 * 239.99915 * 2 1 3 27 27 H 0.97005 * 120.00035 * 180.02562 * 8 7 5 28 28 H 0.97005 * 120.00466 * 337.82290 * 13 3 2 29 29 H 1.08000 * 120.02806 * 359.97438 * 15 14 13 30 30 H 1.07995 * 119.95317 * 180.27513 * 16 15 14 31 31 H 1.08009 * 119.92284 * 179.69869 * 17 16 15 32 32 H 1.09003 * 109.47471 * 269.97597 * 19 18 17 33 33 H 1.08994 * 109.47464 * 29.97987 * 19 18 17 34 34 H 1.09000 * 109.46964 * 149.97858 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5416 1.4444 0.1276 6 1 4.1489 1.8883 -0.6473 7 6 4.1402 0.8795 1.2338 8 7 3.4007 0.3386 2.1774 9 14 6.0015 0.8824 1.3924 10 1 6.4364 2.1160 2.0954 11 1 6.4340 -0.3079 2.1677 12 1 6.6134 0.8415 0.0400 13 7 1.6556 2.0963 -1.2533 14 6 1.5818 3.4903 -1.3202 15 6 1.7729 4.2532 -0.1756 16 6 1.7054 5.6309 -0.2462 17 6 1.4361 6.2509 -1.4526 18 6 1.2390 5.4949 -2.5935 19 6 0.9453 6.1751 -3.9058 20 6 1.3113 4.1162 -2.5314 21 17 1.0632 3.1674 -3.9639 22 1 -0.3634 -1.0243 -0.0817 23 1 -0.3633 0.5831 -0.8462 24 1 -0.3633 0.4414 0.9281 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.8217 -0.0585 2.9558 28 1 1.4525 1.5617 -2.0368 29 1 1.9785 3.7697 0.7680 30 1 1.8583 6.2245 0.6428 31 1 1.3791 7.3283 -1.5038 32 1 -0.1321 6.2951 -4.0198 33 1 1.4237 7.1543 -3.9227 34 1 1.3317 5.5678 -4.7243 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300886355.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:04 Heat of formation + Delta-G solvation = 0.358181 kcal Electronic energy + Delta-G solvation = -16593.758127 eV Core-core repulsion = 13937.483669 eV Total energy + Delta-G solvation = -2656.274459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.05734 -36.21092 -35.85296 -33.07638 -31.83899 -31.19673 -28.52124 -26.51177 -26.29750 -23.14836 -21.83338 -20.92825 -19.36813 -16.74901 -16.45526 -15.86248 -15.27950 -14.53827 -13.86422 -13.72894 -13.54276 -13.07413 -12.89653 -12.60912 -12.26005 -11.97949 -11.81380 -11.35844 -11.26023 -11.10379 -10.92847 -10.87305 -10.71033 -10.30879 -10.10022 -9.96980 -9.82578 -9.77169 -8.82618 -8.47431 -8.09753 -6.62139 -6.06865 -4.20511 1.80953 2.16108 2.75152 3.24889 3.31902 3.36365 4.25198 4.37228 4.49273 5.16514 5.20560 5.35857 5.71925 5.76199 5.80693 6.00833 6.04557 6.09685 6.15773 6.27176 6.35993 6.47954 6.77779 6.83232 6.84267 6.93009 7.04504 7.12961 7.35494 7.47547 7.62849 7.84570 8.20924 8.22673 8.67433 8.87802 9.47163 10.90981 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.007226 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.044033 B = 3873.838643 C = 4353.482895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.041 0.959 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.259 3.741 15 C -0.183 4.183 16 C -0.067 4.067 17 C -0.197 4.197 18 C -0.036 4.036 19 C -0.113 4.113 20 C -0.137 4.137 21 Cl -0.092 7.092 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.388 0.612 29 H 0.139 0.861 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 7.063 -6.818 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.059 0.941 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.340 5.340 14 C 0.147 3.853 15 C -0.206 4.206 16 C -0.086 4.086 17 C -0.218 4.218 18 C -0.037 4.037 19 C -0.170 4.170 20 C -0.169 4.169 21 Cl -0.064 7.064 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.126 0.874 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.222 0.778 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.123 6.709 -6.553 10.687 hybrid contribution 1.015 -0.395 -0.233 1.114 sum -4.108 6.314 -6.786 10.138 Atomic orbital electron populations 1.21825 0.98768 0.99375 1.00495 1.21860 0.92181 0.99434 1.03273 1.18816 0.94161 0.89260 0.80844 0.94091 1.21571 0.91517 1.37734 1.05525 0.92229 1.24904 0.98353 0.94951 0.95526 1.69848 1.35031 1.38529 1.09527 0.86533 0.85411 0.77576 0.78181 1.20561 1.21174 1.19940 1.45588 1.71387 1.01601 1.15474 1.17621 0.90788 0.85579 0.91278 1.20830 1.08458 0.93280 0.98063 1.20900 0.96369 0.94140 0.97198 1.20471 1.10358 0.98686 0.92247 1.19316 0.97693 0.90805 0.95890 1.20791 1.01665 1.00082 0.94475 1.20127 1.19360 0.91054 0.86367 1.98269 1.95913 1.72879 1.39307 0.94562 0.94260 0.93564 0.87436 0.94426 0.92676 0.77760 0.84330 0.86465 0.86725 0.91377 0.91754 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.85 37.16 0.37 -2.43 16 2 C -0.13 -2.87 5.30 -26.73 -0.14 -3.01 16 3 C 0.27 6.36 1.68 -69.09 -0.12 6.25 16 4 H 0.04 1.04 6.45 -51.93 -0.34 0.71 16 5 C -0.52 -13.72 8.71 -34.44 -0.30 -14.02 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -23.91 11.29 55.43 0.63 -23.28 16 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.72 -15.03 4.60 -53.26 -0.25 -15.28 16 14 C 0.26 5.19 6.59 -83.73 -0.55 4.63 16 15 C -0.18 -3.60 9.18 -39.39 -0.36 -3.96 16 16 C -0.07 -1.11 10.04 -39.61 -0.40 -1.51 16 17 C -0.20 -3.03 9.70 -39.55 -0.38 -3.41 16 18 C -0.04 -0.57 5.88 -104.62 -0.62 -1.19 16 19 C -0.11 -1.43 9.61 36.01 0.35 -1.08 16 20 C -0.14 -2.47 6.33 -39.32 -0.25 -2.72 16 21 Cl -0.09 -1.50 25.94 -51.86 -1.35 -2.84 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.71 7.61 -51.93 -0.40 0.31 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.11 2.67 5.95 -51.93 -0.31 2.36 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.39 7.73 7.24 -40.82 -0.30 7.43 16 29 H 0.14 2.96 6.21 -52.49 -0.33 2.63 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -26.20 294.11 -8.57 -34.77 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.52 Total: 7.24 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.50 Total: -20.85 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.38 Total: -38.56 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.35 Total: -2.84 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.20 -8.57 -34.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300886355.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.127 kcal (2) G-P(sol) polarization free energy of solvation -26.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds