Wall clock time and date at job start Mon Mar 30 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46831 * 304.99385 * 4 3 2 6 6 N 1.46497 * 109.46916 * 64.99724 * 4 3 2 7 7 C 1.36935 * 120.00146 * 274.99594 * 6 4 3 8 8 H 1.08012 * 119.99814 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00371 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00312 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47519 * 59.99501 * 11 9 7 13 13 H 1.48500 * 109.47452 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46926 * 299.99846 * 11 9 7 15 15 C 1.50696 * 109.46922 * 184.99674 * 4 3 2 16 16 C 1.38247 * 119.98658 * 100.00234 * 15 4 3 17 17 C 1.38216 * 120.01497 * 179.97438 * 16 15 4 18 18 C 1.38357 * 119.98603 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38219 * 119.98930 * 359.40143 * 20 18 17 22 22 H 1.08997 * 109.46954 * 300.00385 * 1 2 3 23 23 H 1.08997 * 109.46810 * 60.00612 * 1 2 3 24 24 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47577 * 239.99185 * 2 1 3 26 26 H 1.09011 * 109.46962 * 119.99865 * 2 1 3 27 27 H 1.09004 * 109.47308 * 59.99494 * 3 2 1 28 28 H 1.09002 * 109.47136 * 300.00010 * 3 2 1 29 29 H 0.97000 * 119.99758 * 95.00531 * 6 4 3 30 30 H 0.97000 * 119.99881 * 180.02562 * 10 9 7 31 31 H 1.08003 * 119.99321 * 359.97438 * 16 15 4 32 32 H 1.08002 * 120.00776 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00661 * 179.71600 * 20 18 17 34 34 H 1.07997 * 119.99445 * 180.32231 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0578 0.8588 -1.2527 7 6 4.1886 -0.4992 -1.3699 8 1 3.9318 -1.1402 -0.5393 9 6 4.6513 -1.0522 -2.5560 10 7 4.9637 -0.2712 -3.5683 11 14 4.8290 -2.9048 -2.7161 12 1 3.5064 -3.5485 -2.5121 13 1 5.3386 -3.2381 -4.0705 14 1 5.7839 -3.4007 -1.6927 15 6 4.0724 2.8578 0.1231 16 6 4.4993 3.3348 1.3484 17 6 4.9606 4.6327 1.4625 18 6 4.9946 5.4548 0.3501 19 17 5.5746 7.0848 0.4925 20 6 4.5613 4.9788 -0.8745 21 6 4.1063 3.6787 -0.9887 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.2882 1.4344 -1.9987 30 1 5.2867 -0.6577 -4.3973 31 1 4.4723 2.6932 2.2168 32 1 5.2945 5.0051 2.4197 33 1 4.5833 5.6215 -1.7422 34 1 3.7729 3.3054 -1.9457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309067206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:09 Heat of formation + Delta-G solvation = 9.870259 kcal Electronic energy + Delta-G solvation = -16260.343229 eV Core-core repulsion = 13604.481245 eV Total energy + Delta-G solvation = -2655.861984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28950 -36.70349 -35.78395 -33.06028 -31.81070 -30.83112 -29.53971 -27.26868 -24.33091 -22.98976 -22.28033 -20.77906 -19.73872 -17.46304 -16.65339 -15.44821 -15.03733 -14.53805 -14.25049 -13.84474 -13.63088 -13.29078 -13.10351 -12.94102 -12.46253 -12.19269 -11.65703 -11.45628 -11.37606 -10.92443 -10.88862 -10.79491 -10.68648 -10.51750 -10.19013 -10.09072 -9.96262 -9.50162 -8.94806 -8.77664 -8.24342 -7.01331 -5.80545 -3.08520 1.42817 1.55939 2.28213 3.41642 3.46711 3.47337 3.91778 4.55899 5.00794 5.09555 5.19403 5.44796 5.57581 5.62468 5.66848 5.70792 5.84522 5.88765 5.95476 6.11195 6.20829 6.33237 6.36958 6.44522 6.47509 6.52339 6.64461 6.75570 6.87688 7.08986 7.12623 7.27188 7.66543 8.37500 9.48960 10.04064 10.39465 11.41973 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.005641 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.568376 B = 4962.822902 C = 5782.855644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.209 3.791 5 H 0.057 0.943 6 N -0.719 5.719 7 C -0.236 4.236 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.932 5.932 11 Si 0.904 3.096 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.060 4.060 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.047 4.047 19 Cl -0.088 7.088 20 C -0.110 4.110 21 C -0.092 4.092 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.385 0.615 30 H 0.256 0.744 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 9.380 8.663 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.165 4.165 4 C 0.099 3.901 5 H 0.075 0.925 6 N -0.361 5.361 7 C -0.367 4.367 8 H 0.091 0.909 9 C -0.208 4.208 10 N -0.580 5.580 11 Si 0.735 3.265 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.213 1.213 15 C -0.061 4.061 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.073 4.073 19 Cl -0.060 7.060 20 C -0.129 4.129 21 C -0.111 4.111 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.333 9.321 8.667 13.157 hybrid contribution 0.296 -0.644 -0.406 0.817 sum -3.037 8.678 8.260 12.360 Atomic orbital electron populations 1.21786 0.97580 1.00559 1.00626 1.21596 0.93719 0.97353 1.03517 1.22209 0.97525 0.96772 1.00020 1.19292 0.91860 0.87288 0.91694 0.92476 1.42494 1.78125 1.04717 1.10758 1.19167 1.36522 0.83014 0.97966 0.90892 1.24721 1.02021 0.97597 0.96426 1.69639 1.50615 1.33710 1.03991 0.86317 0.77851 0.85548 0.76788 1.21185 1.21736 1.21287 1.20585 0.95602 0.97164 0.92736 1.20993 0.99174 0.94747 0.97748 1.20928 1.01102 0.93808 0.97405 1.20826 1.04534 0.86101 0.95858 1.98335 1.87710 1.21608 1.98331 1.21027 0.99502 0.96431 0.95927 1.21068 0.98362 0.92145 0.99491 0.93960 0.93278 0.93557 0.88749 0.93363 0.93924 0.92585 0.78016 0.93412 0.85377 0.85552 0.85388 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.12 -2.19 5.20 -26.73 -0.14 -2.32 16 3 C -0.12 -2.15 4.87 -26.73 -0.13 -2.28 16 4 C 0.21 3.95 2.64 -69.08 -0.18 3.76 16 5 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 6 N -0.72 -16.88 5.01 -54.55 -0.27 -17.15 16 7 C -0.24 -6.12 7.75 -15.06 -0.12 -6.24 16 8 H 0.07 1.83 7.32 -52.48 -0.38 1.45 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 11 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 C -0.06 -1.01 4.95 -104.62 -0.52 -1.53 16 16 C -0.11 -1.58 9.67 -39.59 -0.38 -1.96 16 17 C -0.11 -1.55 9.83 -39.55 -0.39 -1.94 16 18 C -0.05 -0.66 6.32 -39.50 -0.25 -0.91 16 19 Cl -0.09 -1.12 28.96 -51.86 -1.50 -2.62 16 20 C -0.11 -1.64 9.83 -39.55 -0.39 -2.03 16 21 C -0.09 -1.54 9.05 -39.59 -0.36 -1.89 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.98 5.99 -51.93 -0.31 1.67 16 26 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.38 9.62 6.06 -40.82 -0.25 9.38 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.63 8.04 -52.48 -0.42 1.20 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.14 2.37 6.91 -52.49 -0.36 2.01 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -27.78 298.98 -8.81 -36.59 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.66 Total: 8.03 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.58 Total: -19.59 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.45 Total: -43.63 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.78 -8.81 -36.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309067206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.463 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds