Wall clock time and date at job start Mon Mar 30 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47300 * 2 1 4 4 C 1.53002 * 109.47300 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46831 * 304.99385 * 4 3 2 6 6 N 1.46497 * 109.46916 * 64.99724 * 4 3 2 7 7 C 1.36935 * 120.00146 * 274.99594 * 6 4 3 8 8 H 1.08012 * 119.99814 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00371 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00312 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47519 * 59.99501 * 11 9 7 13 13 H 1.48500 * 109.47452 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46926 * 299.99846 * 11 9 7 15 15 C 1.50696 * 109.46922 * 184.99674 * 4 3 2 16 16 C 1.38247 * 119.98658 * 100.00234 * 15 4 3 17 17 C 1.38216 * 120.01497 * 179.97438 * 16 15 4 18 18 C 1.38357 * 119.98603 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38219 * 119.98930 * 359.40143 * 20 18 17 22 22 H 1.08997 * 109.46954 * 300.00385 * 1 2 3 23 23 H 1.08997 * 109.46810 * 60.00612 * 1 2 3 24 24 H 1.09001 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47577 * 239.99185 * 2 1 3 26 26 H 1.09011 * 109.46962 * 119.99865 * 2 1 3 27 27 H 1.09004 * 109.47308 * 59.99494 * 3 2 1 28 28 H 1.09002 * 109.47136 * 300.00010 * 3 2 1 29 29 H 0.97000 * 119.99758 * 95.00531 * 6 4 3 30 30 H 0.97000 * 119.99881 * 180.02562 * 10 9 7 31 31 H 1.08003 * 119.99321 * 359.97438 * 16 15 4 32 32 H 1.08002 * 120.00776 * 180.02562 * 17 16 15 33 33 H 1.08000 * 120.00661 * 179.71600 * 20 18 17 34 34 H 1.07997 * 119.99445 * 180.32231 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0578 0.8588 -1.2527 7 6 4.1886 -0.4992 -1.3699 8 1 3.9318 -1.1402 -0.5393 9 6 4.6513 -1.0522 -2.5560 10 7 4.9637 -0.2712 -3.5683 11 14 4.8290 -2.9048 -2.7161 12 1 3.5064 -3.5485 -2.5121 13 1 5.3386 -3.2381 -4.0705 14 1 5.7839 -3.4007 -1.6927 15 6 4.0724 2.8578 0.1231 16 6 4.4993 3.3348 1.3484 17 6 4.9606 4.6327 1.4625 18 6 4.9946 5.4548 0.3501 19 17 5.5746 7.0848 0.4925 20 6 4.5613 4.9788 -0.8745 21 6 4.1063 3.6787 -0.9887 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.2882 1.4344 -1.9987 30 1 5.2867 -0.6577 -4.3973 31 1 4.4723 2.6932 2.2168 32 1 5.2945 5.0051 2.4197 33 1 4.5833 5.6215 -1.7422 34 1 3.7729 3.3054 -1.9457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309067206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:08 Heat of formation + Delta-G solvation = -3.981691 kcal Electronic energy + Delta-G solvation = -16260.943894 eV Core-core repulsion = 13604.481245 eV Total energy + Delta-G solvation = -2656.462650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.53343 -38.00964 -37.07254 -34.78727 -33.33567 -32.01126 -31.17102 -28.70470 -26.05445 -24.39173 -23.59464 -22.11138 -21.18944 -19.24539 -17.98997 -16.97795 -16.37469 -16.02392 -15.76458 -15.36123 -15.08857 -14.62464 -14.34557 -14.27352 -13.98787 -13.49578 -13.12025 -12.83329 -12.75059 -12.60982 -12.42433 -12.33019 -12.02277 -11.95550 -11.76948 -11.64677 -11.38309 -11.21537 -10.85321 -9.94086 -9.47169 -8.95290 -7.88377 -5.14662 0.22797 0.39244 1.17824 1.49700 1.51189 1.56759 2.58846 2.72921 3.45895 3.79391 3.90445 4.00408 4.04606 4.32138 4.40349 4.44040 4.51162 4.57100 4.70672 4.80807 4.96204 5.00685 5.06942 5.12356 5.19563 5.29102 5.34610 5.42563 5.55321 5.56874 5.75135 5.79997 5.89599 6.33294 7.40327 8.14045 8.38205 9.35357 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.005641 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.568376 B = 4962.822902 C = 5782.855644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.207 3.793 5 H 0.057 0.943 6 N -0.730 5.730 7 C -0.218 4.218 8 H 0.080 0.920 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.962 3.038 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.280 1.280 15 C -0.079 4.079 16 C -0.105 4.105 17 C -0.107 4.107 18 C -0.049 4.049 19 Cl -0.071 7.071 20 C -0.113 4.113 21 C -0.108 4.108 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.374 0.626 30 H 0.248 0.752 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.140 0.860 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.806 10.093 11.002 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.155 4.155 4 C 0.098 3.902 5 H 0.075 0.925 6 N -0.371 5.371 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.792 3.208 12 H -0.204 1.204 13 H -0.228 1.228 14 H -0.207 1.207 15 C -0.080 4.080 16 C -0.123 4.123 17 C -0.126 4.126 18 C -0.075 4.075 19 Cl -0.043 7.043 20 C -0.132 4.132 21 C -0.126 4.126 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.207 0.793 30 H 0.057 0.943 31 H 0.169 0.831 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.753 10.045 11.062 15.407 hybrid contribution 0.398 -0.727 -1.022 1.316 sum -3.355 9.317 10.041 14.103 Atomic orbital electron populations 1.21724 0.95284 1.01440 1.01521 1.21525 0.95828 0.97026 1.01757 1.22059 0.96049 0.96778 1.00621 1.19436 0.92799 0.88482 0.89437 0.92480 1.42682 1.78253 1.03927 1.12251 1.19506 1.33605 0.84356 0.97556 0.90227 1.25418 1.03559 1.01238 0.96638 1.69796 1.53157 1.35034 1.04339 0.85373 0.77938 0.81392 0.76103 1.20430 1.22774 1.20660 1.20450 0.97367 0.96151 0.93999 1.21212 0.98193 0.95538 0.97402 1.21243 0.99801 0.93127 0.98387 1.20978 1.03796 0.87038 0.95733 1.98344 1.87404 1.20258 1.98262 1.21133 0.99232 0.95839 0.97007 1.20965 0.99646 0.93201 0.98819 0.91738 0.93671 0.92762 0.92771 0.92721 0.91180 0.93916 0.79298 0.94346 0.83149 0.82660 0.84176 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.24 16 2 C -0.12 -4.23 5.20 30.59 0.16 -4.07 16 3 C -0.12 -3.86 4.87 30.59 0.15 -3.71 16 4 C 0.21 7.73 2.64 44.25 0.12 7.84 16 5 H 0.06 2.13 7.94 -2.39 -0.02 2.11 16 6 N -0.73 -34.98 5.01 -326.50 -1.64 -36.62 16 7 C -0.22 -11.49 7.75 84.03 0.65 -10.84 16 8 H 0.08 4.00 7.32 -2.90 -0.02 3.98 16 9 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 10 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 11 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 C -0.08 -2.60 4.95 -19.86 -0.10 -2.70 16 16 C -0.10 -2.81 9.67 22.27 0.22 -2.60 16 17 C -0.11 -2.59 9.83 22.29 0.22 -2.37 16 18 C -0.05 -1.28 6.32 22.32 0.14 -1.14 16 19 Cl -0.07 -1.63 28.96 -2.72 -0.08 -1.71 16 20 C -0.11 -3.27 9.83 22.29 0.22 -3.05 16 21 C -0.11 -3.61 9.05 22.27 0.20 -3.41 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 2.29 5.99 -2.39 -0.01 2.28 16 26 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.37 19.45 6.06 -92.71 -0.56 18.89 16 30 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.15 3.30 8.04 -2.91 -0.02 3.27 16 32 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 34 H 0.12 4.27 6.91 -2.91 -0.02 4.25 16 Total: -1.00 -60.07 298.98 4.27 -55.80 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.53 Total: 26.53 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 3.15 Total: -33.11 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -1.35 Total: -95.03 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -60.07 4.27 -55.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309067206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.817 kcal (2) G-P(sol) polarization free energy of solvation -60.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds