Wall clock time and date at job start Mon Mar 30 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46933 * 2 1 4 4 C 1.37473 * 122.44627 * 264.97064 * 3 2 1 5 5 C 1.36647 * 113.29745 * 180.02562 * 4 3 2 6 6 C 1.46586 * 125.45923 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 H 1.08001 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99824 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99572 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00297 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99858 * 14 12 10 16 16 H 1.48503 * 109.47098 * 209.99924 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99778 * 14 12 10 18 18 S 1.75834 * 109.08343 * 0.26552 * 5 4 3 19 19 C 1.33816 * 122.45248 * 84.99138 * 3 2 1 20 20 C 1.50696 * 124.52152 * 359.94881 * 19 3 2 21 21 H 1.09008 * 109.47212 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47716 * 300.00402 * 1 2 3 23 23 H 1.09003 * 109.47005 * 60.00793 * 1 2 3 24 24 H 1.08996 * 109.47264 * 239.99781 * 2 1 3 25 25 H 1.09003 * 109.47005 * 119.99207 * 2 1 3 26 26 H 1.08000 * 123.35530 * 0.04547 * 4 3 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 28 28 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 29 29 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 30 30 H 0.97001 * 119.99511 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47347 * 90.00100 * 20 19 3 32 32 H 1.09002 * 109.46929 * 209.99615 * 20 19 3 33 33 H 1.09000 * 109.47505 * 329.99371 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0823 -1.1557 5 6 2.8062 3.3604 -0.9392 6 6 3.2352 4.3006 -1.9788 7 8 3.2232 3.9622 -3.1478 8 7 3.6419 5.5401 -1.6401 9 6 4.0763 6.4777 -2.6786 10 6 4.4836 7.7807 -2.0404 11 1 4.4244 7.8988 -0.9685 12 6 4.9310 8.8225 -2.8251 13 7 5.2859 9.9598 -2.2681 14 14 5.0328 8.6185 -4.6791 15 1 3.7469 9.0348 -5.2943 16 1 6.1323 9.4636 -5.2104 17 1 5.3002 7.1949 -5.0065 18 16 2.7719 3.6943 0.7868 19 6 2.1786 2.1307 1.1249 20 6 1.8670 1.6156 2.5064 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.3072 1.6364 -2.1370 27 1 3.6511 5.8100 -0.7085 28 1 4.9252 6.0559 -3.2169 29 1 3.2563 6.6546 -3.3745 30 1 5.6010 10.6926 -2.8201 31 1 2.7568 1.1495 2.9297 32 1 1.5542 2.4447 3.1412 33 1 1.0645 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330595411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:06 Heat of formation + Delta-G solvation = -26.984657 kcal Electronic energy + Delta-G solvation = -15774.931244 eV Core-core repulsion = 13119.514818 eV Total energy + Delta-G solvation = -2655.416427 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33840 -38.27860 -34.36400 -32.95485 -32.35993 -31.61336 -28.55534 -26.66859 -24.02688 -23.43454 -21.59082 -20.10026 -18.68436 -17.87028 -16.67918 -16.07376 -15.08573 -14.90632 -14.62012 -14.34285 -14.14117 -13.82707 -13.27320 -13.06122 -12.81735 -12.56056 -12.35876 -12.31923 -12.12042 -11.58834 -11.49341 -11.14690 -11.01094 -10.78126 -10.66158 -9.98467 -9.54563 -9.45308 -8.80252 -8.59473 -8.40921 -8.15408 -6.22406 -4.25121 0.63644 1.54575 1.96858 2.43598 3.26532 3.33222 3.41636 3.66951 3.89294 4.32784 4.66748 4.82870 4.92230 5.11338 5.12789 5.19704 5.31841 5.34826 5.50890 5.53296 5.65838 5.72300 5.79556 6.02384 6.06196 6.33985 6.46823 6.77934 7.03624 7.12697 7.34408 8.08061 8.44458 8.70795 8.82435 9.36896 10.89461 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.041946 B = 0.004663 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.365281 B = 6002.970245 C = 6560.056265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.119 4.119 4 C -0.060 4.060 5 C -0.249 4.249 6 C 0.574 3.426 7 O -0.546 6.546 8 N -0.699 5.699 9 C 0.220 3.780 10 C -0.546 4.546 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.891 5.891 14 Si 0.877 3.123 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.260 1.260 18 S 0.201 5.799 19 C -0.209 4.209 20 C -0.083 4.083 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.394 0.606 28 H 0.029 0.971 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -18.084 9.152 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.093 4.093 5 C -0.369 4.369 6 C 0.358 3.642 7 O -0.427 6.427 8 N -0.347 5.347 9 C 0.099 3.901 10 C -0.583 4.583 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.528 5.528 14 Si 0.703 3.297 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.185 1.185 18 S 0.470 5.530 19 C -0.328 4.328 20 C -0.141 4.141 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.167 0.833 27 H 0.228 0.772 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.278 -16.779 9.175 20.462 hybrid contribution -0.237 -0.972 -1.366 1.693 sum -7.515 -17.751 7.809 20.797 Atomic orbital electron populations 1.21756 0.94928 1.01460 1.02344 1.20215 0.95870 0.91354 1.02688 1.18600 1.04888 0.98265 0.91422 1.20555 0.97071 0.92032 0.99627 1.24790 1.14690 1.00342 0.97106 1.17041 0.78263 0.81732 0.87143 1.90774 1.55990 1.77482 1.18464 1.46116 1.64238 1.12425 1.11873 1.19566 0.95061 0.88088 0.87416 1.21072 1.45807 0.95395 0.96059 0.90192 1.24782 0.94008 0.94691 0.99018 1.69883 1.43202 1.03569 1.36160 0.86819 0.78411 0.79223 0.85276 1.19773 1.20819 1.18457 1.83128 1.59943 1.10629 0.99273 1.23983 1.08738 0.99912 1.00175 1.20363 1.02294 1.01336 0.90133 0.92507 0.92638 0.92387 0.90948 0.91134 0.83272 0.77197 0.95348 0.95795 0.92213 0.90698 0.91226 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.83 37.16 0.37 -0.83 16 2 C -0.06 -0.56 5.54 -27.89 -0.15 -0.71 16 3 C -0.12 -1.42 5.04 -106.45 -0.54 -1.96 16 4 C -0.06 -0.88 9.78 -40.44 -0.40 -1.28 16 5 C -0.25 -4.15 6.45 -36.79 -0.24 -4.39 16 6 C 0.57 12.00 7.78 -12.89 -0.10 11.90 16 7 O -0.55 -13.13 16.84 5.19 0.09 -13.05 16 8 N -0.70 -15.15 5.54 -62.83 -0.35 -15.50 16 9 C 0.22 5.57 4.50 -5.19 -0.02 5.54 16 10 C -0.55 -15.18 9.83 -34.44 -0.34 -15.51 16 11 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 14 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 18 S 0.20 2.66 22.10 -107.50 -2.38 0.28 16 19 C -0.21 -2.38 6.28 -35.86 -0.23 -2.60 16 20 C -0.08 -0.66 9.71 36.00 0.35 -0.32 16 21 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 22 H 0.05 0.44 7.24 -51.93 -0.38 0.06 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 25 H 0.07 0.54 7.46 -51.93 -0.39 0.15 16 26 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 27 H 0.39 7.71 7.43 -40.82 -0.30 7.40 16 28 H 0.03 0.75 7.20 -51.92 -0.37 0.38 16 29 H 0.02 0.62 7.57 -51.93 -0.39 0.23 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.53 6.39 -51.93 -0.33 0.20 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -31.90 295.04 -7.76 -39.66 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.28 Total: 1.05 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.39 Total: -8.00 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.43 Total: -41.25 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.38 Total: 0.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.90 -7.76 -39.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330595411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.676 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds