Wall clock time and date at job start Mon Mar 30 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46933 * 2 1 4 4 C 1.37473 * 122.44627 * 264.97064 * 3 2 1 5 5 C 1.36647 * 113.29745 * 180.02562 * 4 3 2 6 6 C 1.46586 * 125.45923 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 H 1.08001 * 120.00037 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99824 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99572 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00297 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47136 * 89.99858 * 14 12 10 16 16 H 1.48503 * 109.47098 * 209.99924 * 14 12 10 17 17 H 1.48504 * 109.46915 * 329.99778 * 14 12 10 18 18 S 1.75834 * 109.08343 * 0.26552 * 5 4 3 19 19 C 1.33816 * 122.45248 * 84.99138 * 3 2 1 20 20 C 1.50696 * 124.52152 * 359.94881 * 19 3 2 21 21 H 1.09008 * 109.47212 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47716 * 300.00402 * 1 2 3 23 23 H 1.09003 * 109.47005 * 60.00793 * 1 2 3 24 24 H 1.08996 * 109.47264 * 239.99781 * 2 1 3 25 25 H 1.09003 * 109.47005 * 119.99207 * 2 1 3 26 26 H 1.08000 * 123.35530 * 0.04547 * 4 3 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 28 28 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 29 29 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 30 30 H 0.97001 * 119.99511 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47347 * 90.00100 * 20 19 3 32 32 H 1.09002 * 109.46929 * 209.99615 * 20 19 3 33 33 H 1.09000 * 109.47505 * 329.99371 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3740 2.0823 -1.1557 5 6 2.8062 3.3604 -0.9392 6 6 3.2352 4.3006 -1.9788 7 8 3.2232 3.9622 -3.1478 8 7 3.6419 5.5401 -1.6401 9 6 4.0763 6.4777 -2.6786 10 6 4.4836 7.7807 -2.0404 11 1 4.4244 7.8988 -0.9685 12 6 4.9310 8.8225 -2.8251 13 7 5.2859 9.9598 -2.2681 14 14 5.0328 8.6185 -4.6791 15 1 3.7469 9.0348 -5.2943 16 1 6.1323 9.4636 -5.2104 17 1 5.3002 7.1949 -5.0065 18 16 2.7719 3.6943 0.7868 19 6 2.1786 2.1307 1.1249 20 6 1.8670 1.6156 2.5064 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 2.3072 1.6364 -2.1370 27 1 3.6511 5.8100 -0.7085 28 1 4.9252 6.0559 -3.2169 29 1 3.2563 6.6546 -3.3745 30 1 5.6010 10.6926 -2.8201 31 1 2.7568 1.1495 2.9297 32 1 1.5542 2.4447 3.1412 33 1 1.0645 0.8803 2.4476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330595411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:05 Heat of formation + Delta-G solvation = -47.971107 kcal Electronic energy + Delta-G solvation = -15775.841285 eV Core-core repulsion = 13119.514818 eV Total energy + Delta-G solvation = -2656.326468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.80213 -39.48926 -36.27551 -34.51128 -33.84655 -32.39413 -30.39073 -27.88781 -24.91799 -24.82691 -23.24187 -21.63529 -19.90902 -19.25288 -18.39596 -17.52123 -16.72826 -16.42133 -16.29513 -15.50278 -15.11249 -15.06040 -14.65733 -14.34703 -14.24715 -14.03706 -13.58123 -13.30027 -13.08360 -12.88329 -12.75290 -12.56074 -12.37560 -11.95628 -11.82197 -11.72230 -11.54376 -11.18610 -10.95162 -10.16732 -9.61467 -9.36254 -8.42889 -6.51114 -0.51245 0.45555 0.91855 1.31344 1.33586 1.33880 1.46693 2.14179 2.25066 2.28982 2.92115 3.78662 3.85014 4.10169 4.17256 4.41079 4.55307 4.62617 4.69132 4.73919 4.76380 4.94409 4.97709 5.00014 5.11422 5.16274 5.19855 5.33374 5.34749 5.47356 5.56490 6.02604 6.46569 6.64698 7.05596 7.20556 8.71832 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.041946 B = 0.004663 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.365281 B = 6002.970245 C = 6560.056265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.131 4.131 4 C -0.046 4.046 5 C -0.299 4.299 6 C 0.575 3.425 7 O -0.587 6.587 8 N -0.702 5.702 9 C 0.232 3.768 10 C -0.552 4.552 11 H 0.058 0.942 12 C 0.030 3.970 13 N -0.928 5.928 14 Si 0.938 3.062 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.261 1.261 18 S 0.214 5.786 19 C -0.183 4.183 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.145 0.855 27 H 0.403 0.597 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.274 0.726 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 -20.162 10.304 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.419 4.419 6 C 0.363 3.637 7 O -0.471 6.471 8 N -0.350 5.350 9 C 0.109 3.891 10 C -0.590 4.590 11 H 0.076 0.924 12 C -0.171 4.171 13 N -0.566 5.566 14 Si 0.761 3.239 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.185 1.185 18 S 0.484 5.516 19 C -0.303 4.303 20 C -0.145 4.145 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.162 0.838 27 H 0.239 0.761 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.115 -18.860 10.361 22.998 hybrid contribution -0.023 -0.413 -1.559 1.613 sum -8.138 -19.273 8.803 22.697 Atomic orbital electron populations 1.21753 0.94199 1.02560 1.01829 1.20302 0.96383 0.89288 1.03908 1.18829 1.05261 0.99859 0.90378 1.20784 0.95283 0.91361 1.00648 1.24360 1.18833 1.00531 0.98194 1.17528 0.76921 0.81565 0.87663 1.90728 1.57676 1.78176 1.20480 1.45951 1.64843 1.12608 1.11629 1.19201 0.94328 0.87646 0.87939 1.21235 1.45767 0.96665 0.95310 0.92356 1.25583 0.93556 0.94315 1.03634 1.69978 1.44132 1.04461 1.38065 0.85849 0.79089 0.79189 0.79747 1.18795 1.19460 1.18522 1.83051 1.59971 1.12133 0.96448 1.24535 1.05589 0.98351 1.01866 1.20589 1.03821 1.02297 0.87797 0.90634 0.92157 0.93928 0.90750 0.88976 0.83777 0.76146 0.96439 0.96543 0.91671 0.88862 0.90112 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.83 71.98 0.71 -1.21 16 2 C -0.06 -0.88 5.54 29.85 0.17 -0.71 16 3 C -0.13 -2.84 5.04 -21.05 -0.11 -2.95 16 4 C -0.05 -1.34 9.78 21.72 0.21 -1.12 16 5 C -0.30 -10.02 6.45 24.08 0.16 -9.86 16 6 C 0.58 24.73 7.78 86.42 0.67 25.40 16 7 O -0.59 -29.12 16.84 -4.36 -0.07 -29.19 16 8 N -0.70 -31.29 5.54 -470.89 -2.61 -33.90 16 9 C 0.23 11.98 4.50 85.63 0.38 12.37 16 10 C -0.55 -31.43 9.83 25.60 0.25 -31.18 16 11 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 12 C 0.03 1.72 5.47 84.65 0.46 2.18 16 13 N -0.93 -55.88 13.96 21.45 0.30 -55.58 16 14 Si 0.94 44.60 27.47 68.60 1.88 46.48 16 15 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 18 S 0.21 5.41 22.10 -56.49 -1.25 4.16 16 19 C -0.18 -3.65 6.28 24.68 0.15 -3.49 16 20 C -0.09 -1.01 9.71 71.23 0.69 -0.32 16 21 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 22 H 0.06 0.73 7.24 -2.39 -0.02 0.72 16 23 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 25 H 0.09 1.00 7.46 -2.39 -0.02 0.98 16 26 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.40 16.23 7.43 -92.71 -0.69 15.54 16 28 H 0.02 0.95 7.20 -2.38 -0.02 0.93 16 29 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.83 6.39 -2.39 -0.02 0.82 16 Total: -1.00 -69.77 295.04 2.38 -67.39 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.38 Total: 11.54 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.75 Total: -10.91 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.31 Total: -89.47 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.07 Total: -29.19 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.25 Total: 4.16 kcal Total: -69.77 2.38 -67.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330595411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.416 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds