Wall clock time and date at job start Mon Mar 30 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00200 * 2 1 4 4 H 1.09007 * 109.47151 * 21.48564 * 3 2 1 5 5 C 1.50701 * 109.47267 * 141.48215 * 3 2 1 6 6 N 1.29023 * 124.91810 * 225.00153 * 5 3 2 7 7 C 1.31780 * 117.12333 * 180.02562 * 6 5 3 8 8 C 1.50698 * 122.75133 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47432 * 265.00007 * 8 7 6 10 10 H 1.08000 * 119.99518 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00310 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47225 * 90.00029 * 13 11 9 15 15 H 1.48504 * 109.47298 * 210.00575 * 13 11 9 16 16 H 1.48502 * 109.47012 * 330.00301 * 13 11 9 17 17 C 1.33644 * 114.50489 * 359.97438 * 7 6 5 18 18 S 1.70979 * 124.91190 * 45.00336 * 5 3 2 19 19 C 1.53005 * 109.47545 * 261.48766 * 3 2 1 20 20 C 1.53001 * 117.49399 * 14.37013 * 19 3 2 21 21 C 1.52998 * 117.49370 * 305.75148 * 19 3 2 22 22 H 1.09001 * 109.47543 * 174.81753 * 1 2 3 23 23 H 1.09000 * 109.47064 * 294.81984 * 1 2 3 24 24 H 1.09003 * 109.47482 * 54.81700 * 1 2 3 25 25 H 1.09008 * 109.47301 * 25.00021 * 8 7 6 26 26 H 1.09005 * 109.47496 * 144.99741 * 8 7 6 27 27 H 0.96997 * 119.99927 * 179.97438 * 12 11 9 28 28 H 1.07996 * 126.04053 * 179.97438 * 17 7 6 29 29 H 1.09000 * 115.55304 * 160.08198 * 19 3 2 30 30 H 1.08991 * 117.50301 * 0.02562 * 20 19 3 31 31 H 1.09005 * 117.49208 * 145.02657 * 20 19 3 32 32 H 1.08996 * 117.49827 * 214.97877 * 21 19 3 33 33 H 1.09005 * 117.50248 * 359.97438 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2844 2.0263 0.3764 5 6 3.2301 1.3121 0.8848 6 7 3.5110 2.2286 1.7485 7 6 4.6217 2.0804 2.4420 8 6 5.0719 3.0736 3.4822 9 6 6.0366 4.0500 2.8603 10 1 6.2979 3.9601 1.8162 11 6 6.5856 5.0581 3.6240 12 7 6.2678 5.1672 4.8955 13 14 7.7820 6.2681 2.8532 14 1 7.0312 7.4279 2.3089 15 1 8.7422 6.7392 3.8834 16 1 8.5237 5.5989 1.7544 17 6 5.3162 0.9773 2.1474 18 16 4.4423 0.1063 0.8894 19 6 2.4128 1.6845 -1.4266 20 6 1.8494 0.8363 -2.5686 21 6 3.3254 0.7176 -2.1836 22 1 -0.3634 -1.0234 -0.0928 23 1 -0.3633 0.4314 0.9327 24 1 -0.3634 0.5921 -0.8399 25 1 4.2068 3.6132 3.8679 26 1 5.5648 2.5461 4.2990 27 1 6.6543 5.8762 5.4329 28 1 6.2486 0.6737 2.5999 29 1 2.5467 2.7507 -1.6097 30 1 1.1917 0.0086 -2.3036 31 1 1.6124 1.3446 -3.5033 32 1 4.0594 1.1476 -2.8650 33 1 3.6394 -0.1884 -1.6652 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379778056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:46 Heat of formation + Delta-G solvation = 20.208542 kcal Electronic energy + Delta-G solvation = -16196.672110 eV Core-core repulsion = 13543.302134 eV Total energy + Delta-G solvation = -2653.369976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59580 -38.54265 -35.89288 -33.27286 -31.27135 -28.64133 -27.16433 -26.08531 -24.01343 -22.65863 -22.05904 -20.22926 -19.07238 -17.21126 -16.56166 -16.33200 -16.09104 -15.51370 -14.64992 -14.57052 -13.74112 -13.72707 -13.31216 -12.67401 -12.34861 -12.23379 -11.81837 -11.59171 -11.41458 -11.40028 -11.03212 -10.68860 -10.52042 -10.42245 -10.16383 -9.84103 -9.71798 -9.45077 -8.97761 -8.71745 -8.41791 -7.88939 -6.04144 -4.07064 1.34849 2.00703 2.43001 3.31500 3.36639 3.39682 3.42614 3.60236 3.82391 4.45714 4.63546 4.70479 4.88167 5.11780 5.17101 5.24917 5.31810 5.42168 5.49102 5.53277 5.63256 5.78525 5.87262 6.06784 6.09769 6.16397 6.38172 6.95862 7.08939 7.49544 7.56827 7.91386 8.29619 8.56670 8.95594 9.55748 11.06310 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030457 B = 0.005369 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.113842 B = 5213.662190 C = 5422.255289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.200 3.800 4 H 0.094 0.906 5 C 0.035 3.965 6 N -0.454 5.454 7 C 0.110 3.890 8 C 0.085 3.915 9 C -0.509 4.509 10 H 0.055 0.945 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C -0.267 4.267 18 S 0.092 5.908 19 C -0.175 4.175 20 C -0.168 4.168 21 C -0.167 4.167 22 H 0.087 0.913 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.172 0.828 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 -10.695 -12.068 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C 0.138 3.862 4 H 0.112 0.888 5 C -0.243 4.243 6 N -0.170 5.170 7 C -0.020 4.020 8 C 0.045 3.955 9 C -0.547 4.547 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.405 4.405 18 S 0.345 5.655 19 C -0.195 4.195 20 C -0.205 4.205 21 C -0.204 4.204 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.189 0.811 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.349 -11.262 -12.389 19.176 hybrid contribution 0.855 1.631 0.314 1.868 sum -8.494 -9.631 -12.075 17.627 Atomic orbital electron populations 1.22871 0.80496 1.02796 1.00521 1.87893 1.20067 1.26724 1.94753 1.19606 0.90417 0.85538 0.90598 0.88794 1.26458 1.00998 0.95805 1.01017 1.66120 1.18887 1.26216 1.05797 1.21165 0.88008 0.95124 0.97727 1.17993 0.96742 0.90751 0.90018 1.20983 1.25237 1.12121 0.96407 0.92642 1.24970 0.96834 0.97566 0.94835 1.69952 1.44111 1.33028 1.06205 0.86509 0.80781 0.81314 0.78937 1.20562 1.21094 1.19854 1.26866 1.07131 1.01022 1.05477 1.83442 1.17217 1.27909 1.36960 1.22766 1.06788 0.98340 0.91572 1.22965 0.97328 1.02456 0.97719 1.22931 0.93084 1.01410 1.02953 0.89441 0.93655 0.93497 0.94375 0.94462 0.92782 0.81085 0.86495 0.88099 0.88971 0.88718 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.99 101.05 1.01 1.29 16 2 O -0.38 -4.95 8.88 -35.23 -0.31 -5.26 16 3 C 0.20 2.92 3.08 -27.88 -0.09 2.84 16 4 H 0.09 1.34 7.72 -51.93 -0.40 0.94 16 5 C 0.04 0.65 6.23 -13.46 -0.08 0.57 16 6 N -0.45 -10.14 10.53 -8.06 -0.08 -10.22 16 7 C 0.11 2.58 5.93 -84.23 -0.50 2.08 16 8 C 0.08 2.28 5.39 -29.04 -0.16 2.12 16 9 C -0.51 -14.66 9.09 -34.44 -0.31 -14.97 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 13 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.27 -5.44 11.14 29.12 0.32 -5.12 16 18 S 0.09 1.56 21.36 -107.50 -2.30 -0.73 16 19 C -0.18 -2.25 5.77 -90.62 -0.52 -2.77 16 20 C -0.17 -1.72 9.62 -26.73 -0.26 -1.97 16 21 C -0.17 -2.00 9.50 -26.73 -0.25 -2.26 16 22 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.37 7.59 -51.93 -0.39 -0.02 16 25 H 0.04 1.10 8.14 -51.92 -0.42 0.68 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.17 3.20 8.06 -52.49 -0.42 2.78 16 29 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.10 0.99 6.23 -51.93 -0.32 0.67 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 1.27 6.92 -51.93 -0.36 0.91 16 LS Contribution 295.68 15.07 4.46 4.46 Total: -1.00 -31.41 295.68 -7.86 -39.27 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.40 Total: -1.81 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.94 Total: -16.58 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.65 Total: -36.17 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.31 Total: -5.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.30 Total: -0.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.41 -7.86 -39.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379778056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.475 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds