Wall clock time and date at job start Mon Mar 30 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33642 * 122.74955 * 2 1 4 4 S 1.76195 * 107.92494 * 179.75654 * 3 2 1 5 5 C 1.70972 * 90.28360 * 0.28681 * 4 3 2 6 6 C 1.50703 * 124.91844 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47869 * 194.67006 * 6 5 4 8 8 C 1.53097 * 109.48920 * 74.64344 * 6 5 4 9 9 C 1.53180 * 109.21119 * 182.43770 * 8 6 5 10 10 C 1.53177 * 109.03525 * 56.88485 * 9 8 6 11 11 C 1.53098 * 109.21356 * 303.11207 * 10 9 8 12 12 H 1.08999 * 109.47354 * 177.55660 * 11 10 9 13 13 C 1.50699 * 109.47849 * 297.59379 * 11 10 9 14 14 H 1.07991 * 120.00112 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99468 * 179.97438 * 13 11 10 16 16 N 1.31513 * 120.00132 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99845 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46989 * 59.99985 * 17 15 13 19 19 H 1.48499 * 109.46900 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47202 * 300.00457 * 17 15 13 21 21 O 1.42898 * 109.48125 * 314.69631 * 6 5 4 22 22 N 1.29030 * 110.16689 * 359.70593 * 5 4 3 23 23 H 1.09000 * 109.47533 * 270.02397 * 1 2 3 24 24 H 1.09003 * 109.47219 * 30.02237 * 1 2 3 25 25 H 1.08997 * 109.46971 * 150.01569 * 1 2 3 26 26 H 1.08001 * 126.03848 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.52138 * 302.30791 * 8 6 5 28 28 H 1.09005 * 109.52063 * 62.43199 * 8 6 5 29 29 H 1.09005 * 109.49724 * 297.04659 * 9 8 6 30 30 H 1.09005 * 109.59319 * 176.78366 * 9 8 6 31 31 H 1.09002 * 109.52487 * 183.17418 * 10 9 8 32 32 H 1.09004 * 109.52023 * 63.05037 * 10 9 8 33 33 H 0.97000 * 120.00035 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0071 5 6 3.5040 -0.9818 0.0008 6 6 4.4836 -2.1270 0.0021 7 1 3.9655 -3.0487 -0.2628 8 6 5.0999 -2.2704 1.3962 9 6 6.1385 -3.3961 1.3748 10 6 7.1881 -3.0872 0.3027 11 6 6.4911 -2.9122 -1.0491 12 1 7.2290 -2.6494 -1.8071 13 6 5.8112 -4.2008 -1.4344 14 1 5.8703 -5.0588 -0.7814 15 6 5.1137 -4.2841 -2.6209 16 7 5.0421 -3.2393 -3.4164 17 14 4.2715 -5.8815 -3.0989 18 1 3.2665 -6.2397 -2.0659 19 1 3.5955 -5.7115 -4.4101 20 1 5.2836 -6.9635 -3.2009 21 8 5.5176 -1.8708 -0.9503 22 7 2.2199 -1.1083 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5136 26 1 1.8392 2.1308 -0.0004 27 1 5.5834 -1.3353 1.6786 28 1 4.3179 -2.5085 2.1174 29 1 5.6466 -4.3406 1.1420 30 1 6.6221 -3.4659 2.3492 31 1 7.8998 -3.9105 0.2417 32 1 7.7147 -2.1689 0.5626 33 1 4.5517 -3.2981 -4.2512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:57 Heat of formation + Delta-G solvation = -13.958135 kcal Electronic energy + Delta-G solvation = -16990.986295 eV Core-core repulsion = 14336.134741 eV Total energy + Delta-G solvation = -2654.851554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47679 -38.11631 -32.93520 -32.50301 -31.87152 -29.84506 -27.33065 -26.00420 -24.58917 -22.43608 -21.44532 -19.46213 -18.79317 -17.33569 -16.26785 -15.45018 -14.76444 -14.57830 -14.46147 -13.98618 -13.59135 -13.34297 -12.85947 -12.65683 -12.42226 -12.14385 -11.86912 -11.64593 -11.29362 -10.90323 -10.86063 -10.66576 -10.44518 -10.26326 -10.02123 -9.73155 -9.11234 -8.97867 -8.75563 -8.49638 -8.27386 -7.87540 -6.01414 -4.17560 1.17539 1.88923 2.31250 3.20640 3.31091 3.36582 3.38218 4.31638 4.41256 5.15901 5.32643 5.40693 5.50141 5.58229 5.64002 5.71239 5.76720 5.88365 6.09987 6.13770 6.17192 6.26125 6.42752 6.59110 6.62953 6.82844 6.86474 6.96222 7.05288 7.61201 7.84129 8.15316 8.26057 8.72355 8.97300 9.55495 11.02725 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.008680 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.819019 B = 3225.149058 C = 3943.578837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 C -0.293 4.293 4 S 0.137 5.863 5 C 0.097 3.903 6 C 0.174 3.826 7 H 0.095 0.905 8 C -0.136 4.136 9 C -0.107 4.107 10 C -0.143 4.143 11 C 0.214 3.786 12 H 0.067 0.933 13 C -0.563 4.563 14 H 0.059 0.941 15 C 0.081 3.919 16 N -0.856 5.856 17 Si 0.884 3.116 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.367 6.367 22 N -0.480 5.480 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.169 0.831 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 6.745 8.001 11.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C -0.433 4.433 4 S 0.393 5.607 5 C -0.181 4.181 6 C 0.112 3.888 7 H 0.113 0.887 8 C -0.175 4.175 9 C -0.145 4.145 10 C -0.181 4.181 11 C 0.159 3.841 12 H 0.084 0.916 13 C -0.601 4.601 14 H 0.077 0.923 15 C -0.125 4.125 16 N -0.492 5.492 17 Si 0.711 3.289 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.286 6.286 22 N -0.196 5.196 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.186 0.814 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.993 7.025 7.705 10.848 hybrid contribution -1.466 -1.046 -0.309 1.827 sum -4.458 5.979 7.396 10.504 Atomic orbital electron populations 1.20299 0.87753 1.03003 1.02375 1.20240 0.97938 0.86805 1.01640 1.26747 0.96419 1.03414 1.16699 1.83914 1.05881 1.04015 1.66846 1.27141 0.93551 0.97953 0.99445 1.19881 0.87578 0.92082 0.89225 0.88700 1.22142 0.98855 0.99478 0.97002 1.21435 0.96579 0.98783 0.97654 1.22202 0.97818 0.99720 0.98381 1.19780 0.86962 0.86819 0.90536 0.91558 1.21486 1.35325 0.97916 1.05380 0.92277 1.25032 0.95633 0.95830 0.96054 1.70030 1.39535 1.28657 1.10929 0.86801 0.79952 0.84190 0.77959 1.19985 1.21223 1.20117 1.87927 1.36778 1.45747 1.58131 1.66094 1.04645 1.31330 1.17507 0.91084 0.91149 0.90753 0.81370 0.92414 0.92170 0.90937 0.93500 0.92170 0.93860 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.31 36.01 0.37 -0.59 16 2 C 0.07 1.15 6.74 -84.22 -0.57 0.58 16 3 C -0.29 -4.58 11.13 29.12 0.32 -4.25 16 4 S 0.14 2.42 23.02 -107.50 -2.47 -0.06 16 5 C 0.10 2.04 6.34 -13.45 -0.09 1.96 16 6 C 0.17 3.92 2.89 -27.83 -0.08 3.83 16 7 H 0.10 2.43 7.09 -51.93 -0.37 2.06 16 8 C -0.14 -2.55 5.40 -26.59 -0.14 -2.69 16 9 C -0.11 -1.98 5.78 -26.55 -0.15 -2.13 16 10 C -0.14 -2.89 5.59 -26.59 -0.15 -3.03 16 11 C 0.21 5.29 3.16 -27.83 -0.09 5.20 16 12 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 13 C -0.56 -14.92 6.59 -34.44 -0.23 -15.15 16 14 H 0.06 1.53 6.87 -52.49 -0.36 1.17 16 15 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 16 N -0.86 -24.91 12.84 55.43 0.71 -24.20 16 17 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.37 -9.18 9.47 -35.23 -0.33 -9.52 16 22 N -0.48 -9.98 10.53 -8.06 -0.08 -10.06 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.43 6.86 -51.93 -0.36 1.07 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 286.50 15.07 4.32 4.32 Total: -1.00 -29.85 286.50 -8.23 -38.07 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.45 Total: -0.66 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.90 Total: -14.13 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.63 Total: -34.26 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.33 Total: -9.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.47 Total: -0.06 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.85 -8.23 -38.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.117 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds