Wall clock time and date at job start Mon Mar 30 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33642 * 122.74955 * 2 1 4 4 S 1.76195 * 107.92494 * 179.75654 * 3 2 1 5 5 C 1.70972 * 90.28360 * 0.28681 * 4 3 2 6 6 C 1.50703 * 124.91844 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47869 * 194.67006 * 6 5 4 8 8 C 1.53097 * 109.48920 * 74.64344 * 6 5 4 9 9 C 1.53180 * 109.21119 * 182.43770 * 8 6 5 10 10 C 1.53177 * 109.03525 * 56.88485 * 9 8 6 11 11 C 1.53098 * 109.21356 * 303.11207 * 10 9 8 12 12 H 1.08999 * 109.47354 * 177.55660 * 11 10 9 13 13 C 1.50699 * 109.47849 * 297.59379 * 11 10 9 14 14 H 1.07991 * 120.00112 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99468 * 179.97438 * 13 11 10 16 16 N 1.31513 * 120.00132 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99845 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46989 * 59.99985 * 17 15 13 19 19 H 1.48499 * 109.46900 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47202 * 300.00457 * 17 15 13 21 21 O 1.42898 * 109.48125 * 314.69631 * 6 5 4 22 22 N 1.29030 * 110.16689 * 359.70593 * 5 4 3 23 23 H 1.09000 * 109.47533 * 270.02397 * 1 2 3 24 24 H 1.09003 * 109.47219 * 30.02237 * 1 2 3 25 25 H 1.08997 * 109.46971 * 150.01569 * 1 2 3 26 26 H 1.08001 * 126.03848 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.52138 * 302.30791 * 8 6 5 28 28 H 1.09005 * 109.52063 * 62.43199 * 8 6 5 29 29 H 1.09005 * 109.49724 * 297.04659 * 9 8 6 30 30 H 1.09005 * 109.59319 * 176.78366 * 9 8 6 31 31 H 1.09002 * 109.52487 * 183.17418 * 10 9 8 32 32 H 1.09004 * 109.52023 * 63.05037 * 10 9 8 33 33 H 0.97000 * 120.00035 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0071 5 6 3.5040 -0.9818 0.0008 6 6 4.4836 -2.1270 0.0021 7 1 3.9655 -3.0487 -0.2628 8 6 5.0999 -2.2704 1.3962 9 6 6.1385 -3.3961 1.3748 10 6 7.1881 -3.0872 0.3027 11 6 6.4911 -2.9122 -1.0491 12 1 7.2290 -2.6494 -1.8071 13 6 5.8112 -4.2008 -1.4344 14 1 5.8703 -5.0588 -0.7814 15 6 5.1137 -4.2841 -2.6209 16 7 5.0421 -3.2393 -3.4164 17 14 4.2715 -5.8815 -3.0989 18 1 3.2665 -6.2397 -2.0659 19 1 3.5955 -5.7115 -4.4101 20 1 5.2836 -6.9635 -3.2009 21 8 5.5176 -1.8708 -0.9503 22 7 2.2199 -1.1083 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5136 26 1 1.8392 2.1308 -0.0004 27 1 5.5834 -1.3353 1.6786 28 1 4.3179 -2.5085 2.1174 29 1 5.6466 -4.3406 1.1420 30 1 6.6221 -3.4659 2.3492 31 1 7.8998 -3.9105 0.2417 32 1 7.7147 -2.1689 0.5626 33 1 4.5517 -3.2981 -4.2512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:57 Heat of formation + Delta-G solvation = -32.744164 kcal Electronic energy + Delta-G solvation = -16991.800919 eV Core-core repulsion = 14336.134741 eV Total energy + Delta-G solvation = -2655.666178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.92223 -39.81588 -34.81599 -34.16768 -33.51042 -31.40426 -28.53578 -27.87636 -26.23631 -24.16408 -23.00202 -21.05628 -20.34954 -18.81921 -18.16855 -17.04120 -16.63210 -16.22346 -15.98283 -15.59457 -15.20020 -14.87551 -14.48137 -14.06128 -13.72980 -13.54755 -13.30438 -13.12117 -13.05000 -12.80680 -12.53847 -12.34927 -12.13631 -11.84195 -11.61987 -11.55244 -10.80983 -10.61256 -10.46473 -10.30207 -9.83976 -9.50542 -8.12236 -6.32423 -0.22263 0.51737 0.93371 1.36758 1.38698 1.44866 1.82528 2.38222 2.81937 3.19839 3.82268 4.00258 4.10591 4.21030 4.30535 4.37460 4.49218 4.54106 4.66567 4.78710 4.87240 4.91042 4.97184 5.01747 5.15324 5.24900 5.33456 5.40773 5.45959 5.62800 5.77131 6.12746 6.72713 6.87062 7.01210 7.44209 8.91618 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.008680 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.819019 B = 3225.149058 C = 3943.578837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.040 3.960 3 C -0.269 4.269 4 S 0.158 5.842 5 C 0.051 3.949 6 C 0.177 3.823 7 H 0.050 0.950 8 C -0.128 4.128 9 C -0.103 4.103 10 C -0.135 4.135 11 C 0.206 3.794 12 H 0.035 0.965 13 C -0.563 4.563 14 H 0.061 0.939 15 C 0.030 3.970 16 N -0.894 5.894 17 Si 0.940 3.060 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.263 1.263 21 O -0.387 6.387 22 N -0.507 5.507 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.212 0.788 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 7.742 9.595 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 C -0.408 4.408 4 S 0.413 5.587 5 C -0.226 4.226 6 C 0.115 3.885 7 H 0.068 0.932 8 C -0.167 4.167 9 C -0.141 4.141 10 C -0.173 4.173 11 C 0.151 3.849 12 H 0.053 0.947 13 C -0.601 4.601 14 H 0.080 0.920 15 C -0.172 4.172 16 N -0.532 5.532 17 Si 0.766 3.234 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.187 1.187 21 O -0.306 6.306 22 N -0.225 5.225 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.229 0.771 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.673 7.999 9.315 12.815 hybrid contribution -1.290 -1.249 -0.788 1.961 sum -4.963 6.749 8.527 11.954 Atomic orbital electron populations 1.20425 0.84847 1.03864 1.03891 1.20899 0.99852 0.86307 1.02169 1.27265 0.94826 1.04956 1.13777 1.83699 1.07546 1.01353 1.66053 1.26882 0.93707 0.99436 1.02566 1.19777 0.87018 0.91253 0.90413 0.93220 1.22084 0.99236 1.00340 0.94992 1.21433 0.96044 0.97718 0.98887 1.22078 0.98094 1.00942 0.96199 1.19732 0.86760 0.85945 0.92503 0.94690 1.21814 1.34490 0.98752 1.05021 0.92042 1.25762 0.96529 0.98583 0.96350 1.70168 1.41048 1.30622 1.11344 0.85892 0.79145 0.81056 0.77307 1.19949 1.21394 1.18723 1.87839 1.37540 1.45498 1.59726 1.66096 1.05030 1.33768 1.17564 0.89187 0.88188 0.91982 0.77092 0.90894 0.90769 0.92652 0.89636 0.91329 0.92168 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.31 71.24 0.73 -0.91 16 2 C 0.04 1.29 6.74 41.52 0.28 1.57 16 3 C -0.27 -7.59 11.13 66.78 0.74 -6.85 16 4 S 0.16 5.36 23.02 -56.49 -1.30 4.06 16 5 C 0.05 2.15 6.34 88.52 0.56 2.71 16 6 C 0.18 8.12 2.89 29.88 0.09 8.20 16 7 H 0.05 2.68 7.09 -2.39 -0.02 2.66 16 8 C -0.13 -4.67 5.40 30.69 0.17 -4.50 16 9 C -0.10 -3.66 5.78 30.71 0.18 -3.49 16 10 C -0.14 -5.33 5.59 30.69 0.17 -5.16 16 11 C 0.21 10.43 3.16 29.88 0.09 10.53 16 12 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 13 C -0.56 -30.57 6.59 25.60 0.17 -30.40 16 14 H 0.06 3.23 6.87 -2.92 -0.02 3.21 16 15 C 0.03 1.72 5.40 84.66 0.46 2.17 16 16 N -0.89 -54.05 12.84 21.45 0.28 -53.77 16 17 Si 0.94 44.64 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 O -0.39 -19.90 9.47 -148.98 -1.41 -21.31 16 22 N -0.51 -21.10 10.53 -179.40 -1.89 -22.99 16 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.10 1.70 8.12 -2.39 -0.02 1.68 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.05 2.14 6.86 -2.38 -0.02 2.13 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.14 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -67.10 286.50 2.44 -64.66 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.10 Total: 8.80 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.64 Total: -26.12 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -1.61 Total: -76.76 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.41 Total: -21.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.30 Total: 4.06 kcal Total: -67.10 2.44 -64.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.920 kcal (2) G-P(sol) polarization free energy of solvation -67.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds