Wall clock time and date at job start Mon Mar 30 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33637 * 122.74931 * 2 1 4 4 S 1.76194 * 107.92695 * 179.97438 * 3 2 1 5 5 C 1.70984 * 90.27990 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91406 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47821 * 164.99774 * 6 5 4 8 8 C 1.53085 * 109.48580 * 285.02654 * 6 5 4 9 9 C 1.53172 * 109.16717 * 177.59322 * 8 6 5 10 10 C 1.53179 * 109.03754 * 303.01831 * 9 8 6 11 11 C 1.53100 * 109.16002 * 56.98011 * 10 9 8 12 12 H 1.08993 * 109.48289 * 62.37718 * 11 10 9 13 13 C 1.50703 * 109.47783 * 182.41181 * 11 10 9 14 14 H 1.07999 * 119.99679 * 359.97438 * 13 11 10 15 15 C 1.37874 * 119.99647 * 179.97438 * 13 11 10 16 16 N 1.31522 * 119.99735 * 179.97438 * 15 13 11 17 17 Si 1.86795 * 120.00410 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47117 * 89.99755 * 17 15 13 19 19 H 1.48495 * 109.47530 * 210.00107 * 17 15 13 20 20 H 1.48503 * 109.46949 * 330.00000 * 17 15 13 21 21 O 1.42900 * 109.47971 * 44.97091 * 6 5 4 22 22 N 1.29025 * 110.16562 * 359.73362 * 5 4 3 23 23 H 1.09001 * 109.46953 * 90.02685 * 1 2 3 24 24 H 1.09000 * 109.47318 * 210.02283 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.02913 * 1 2 3 26 26 H 1.08007 * 126.04031 * 359.97438 * 3 2 1 27 27 H 1.09006 * 109.51904 * 297.49677 * 8 6 5 28 28 H 1.08999 * 109.52299 * 57.61914 * 8 6 5 29 29 H 1.09002 * 109.54766 * 62.88355 * 9 8 6 30 30 H 1.09002 * 109.54680 * 183.06117 * 9 8 6 31 31 H 1.08998 * 109.52156 * 176.88310 * 10 9 8 32 32 H 1.08999 * 109.52298 * 297.01022 * 10 9 8 33 33 H 0.97001 * 119.99567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5040 -0.9819 0.0018 6 6 4.4835 -2.1270 0.0022 7 1 3.9656 -3.0483 0.2688 8 6 5.0996 -2.2726 -1.3916 9 6 6.1374 -3.3989 -1.3676 10 6 7.1881 -3.0873 -0.2974 11 6 6.4914 -2.9103 1.0543 12 1 5.9999 -3.8418 1.3347 13 6 7.5117 -2.5451 2.1016 14 1 8.5528 -2.4493 1.8308 15 6 7.1160 -2.3335 3.4052 16 7 8.0065 -2.0153 4.3193 17 14 5.3154 -2.5000 3.8736 18 1 5.0368 -3.9014 4.2783 19 1 5.0119 -1.5882 5.0057 20 1 4.4660 -2.1429 2.7090 21 8 5.5177 -1.8691 0.9540 22 7 2.2199 -1.1083 0.0071 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8392 2.1308 -0.0004 27 1 4.3177 -2.5132 -2.1121 28 1 5.5819 -1.3375 -1.6762 29 1 5.6459 -4.3428 -1.1320 30 1 6.6189 -3.4720 -2.3428 31 1 7.8999 -3.9105 -0.2353 32 1 7.7145 -2.1697 -0.5599 33 1 7.7280 -1.8660 5.2364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379866621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:00 Heat of formation + Delta-G solvation = -9.094763 kcal Electronic energy + Delta-G solvation = -16841.011376 eV Core-core repulsion = 14186.370713 eV Total energy + Delta-G solvation = -2654.640663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74995 -38.44203 -33.28196 -32.89951 -32.09856 -30.26271 -27.56255 -26.43673 -24.82818 -22.39073 -21.35537 -19.94955 -19.01994 -17.53469 -16.85749 -15.59849 -15.28046 -14.99400 -14.59213 -14.16729 -13.89720 -13.52941 -12.98882 -12.91916 -12.55966 -12.48700 -12.30221 -12.08917 -11.24399 -11.10207 -11.01411 -10.68200 -10.60051 -10.28468 -10.04932 -9.70371 -9.37015 -9.25248 -9.07432 -8.60831 -8.54599 -8.16828 -6.15699 -4.24127 0.93007 1.66270 2.09921 2.94109 3.37034 3.45134 3.67212 3.99283 4.50435 4.85564 5.09620 5.22080 5.25297 5.30705 5.35271 5.47664 5.55453 5.67105 5.75871 5.79526 5.84249 5.94720 6.12586 6.27313 6.35083 6.39730 6.50092 6.59372 6.67185 7.13525 7.57729 7.97277 8.32622 8.42503 8.86937 9.48287 10.94087 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.008667 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.295995 B = 3229.719820 C = 3901.243061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.063 3.937 3 C -0.289 4.289 4 S 0.166 5.834 5 C 0.076 3.924 6 C 0.152 3.848 7 H 0.075 0.925 8 C -0.137 4.137 9 C -0.121 4.121 10 C -0.135 4.135 11 C 0.185 3.815 12 H 0.017 0.983 13 C -0.514 4.514 14 H 0.082 0.918 15 C 0.087 3.913 16 N -0.887 5.887 17 Si 0.869 3.131 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.226 1.226 21 O -0.370 6.370 22 N -0.481 5.481 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.172 0.828 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 3.592 -10.987 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.429 4.429 4 S 0.422 5.578 5 C -0.201 4.201 6 C 0.091 3.909 7 H 0.093 0.907 8 C -0.176 4.176 9 C -0.158 4.158 10 C -0.173 4.173 11 C 0.131 3.869 12 H 0.034 0.966 13 C -0.550 4.550 14 H 0.100 0.900 15 C -0.119 4.119 16 N -0.524 5.524 17 Si 0.696 3.304 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.149 1.149 21 O -0.291 6.291 22 N -0.197 5.197 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.190 0.810 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.413 3.828 -10.685 15.403 hybrid contribution -1.770 -0.162 0.355 1.813 sum -12.183 3.666 -10.330 16.388 Atomic orbital electron populations 1.20306 0.87513 1.03072 1.02527 1.20226 0.98000 0.86692 1.02052 1.26887 0.96671 1.03682 1.15645 1.84197 1.05161 1.02665 1.65749 1.26883 0.93477 0.98505 1.01239 1.20147 0.87884 0.91780 0.91124 0.90742 1.22145 0.98879 1.00375 0.96172 1.21641 0.96994 0.97570 0.99622 1.22082 0.97626 1.01823 0.95741 1.20261 0.86453 0.87112 0.93124 0.96572 1.20906 0.93672 1.49832 0.90622 0.90011 1.25041 0.97994 0.92526 0.96298 1.69924 1.34451 1.45370 1.02618 0.87063 0.86573 0.77551 0.79245 1.21163 1.21850 1.14880 1.88490 1.36339 1.47936 1.56300 1.66075 1.04453 1.31748 1.17416 0.90963 0.90784 0.91002 0.81048 0.91698 0.91195 0.92192 0.92112 0.91537 0.91695 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.31 36.01 0.37 -0.45 16 2 C 0.06 0.97 6.74 -84.23 -0.57 0.40 16 3 C -0.29 -4.09 11.13 29.12 0.32 -3.77 16 4 S 0.17 2.75 23.01 -107.50 -2.47 0.28 16 5 C 0.08 1.43 6.35 -13.46 -0.09 1.35 16 6 C 0.15 2.96 2.98 -27.84 -0.08 2.87 16 7 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 8 C -0.14 -2.21 5.40 -26.60 -0.14 -2.35 16 9 C -0.12 -1.90 6.03 -26.55 -0.16 -2.06 16 10 C -0.13 -2.60 5.36 -26.59 -0.14 -2.75 16 11 C 0.19 4.34 1.99 -27.83 -0.06 4.29 16 12 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 13 C -0.51 -14.36 9.38 -34.44 -0.32 -14.68 16 14 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.87 22.30 26.99 -169.99 -4.59 17.71 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.23 -5.70 5.16 56.52 0.29 -5.41 16 21 O -0.37 -8.55 6.78 -35.23 -0.24 -8.79 16 22 N -0.48 -8.77 10.53 -8.06 -0.08 -8.85 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 26 H 0.17 1.84 8.06 -52.48 -0.42 1.41 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -31.34 285.09 -7.98 -39.32 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.71 Total: -2.97 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.96 Total: -14.73 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.69 Total: -35.12 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.24 Total: -8.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.59 Total: 17.71 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.47 Total: 0.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.34 -7.98 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.228 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds