Wall clock time and date at job start Mon Mar 30 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33637 * 122.74931 * 2 1 4 4 S 1.76194 * 107.92695 * 179.97438 * 3 2 1 5 5 C 1.70984 * 90.27990 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91406 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47821 * 164.99774 * 6 5 4 8 8 C 1.53085 * 109.48580 * 285.02654 * 6 5 4 9 9 C 1.53172 * 109.16717 * 177.59322 * 8 6 5 10 10 C 1.53179 * 109.03754 * 303.01831 * 9 8 6 11 11 C 1.53100 * 109.16002 * 56.98011 * 10 9 8 12 12 H 1.08993 * 109.48289 * 62.37718 * 11 10 9 13 13 C 1.50703 * 109.47783 * 182.41181 * 11 10 9 14 14 H 1.07999 * 119.99679 * 359.97438 * 13 11 10 15 15 C 1.37874 * 119.99647 * 179.97438 * 13 11 10 16 16 N 1.31522 * 119.99735 * 179.97438 * 15 13 11 17 17 Si 1.86795 * 120.00410 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47117 * 89.99755 * 17 15 13 19 19 H 1.48495 * 109.47530 * 210.00107 * 17 15 13 20 20 H 1.48503 * 109.46949 * 330.00000 * 17 15 13 21 21 O 1.42900 * 109.47971 * 44.97091 * 6 5 4 22 22 N 1.29025 * 110.16562 * 359.73362 * 5 4 3 23 23 H 1.09001 * 109.46953 * 90.02685 * 1 2 3 24 24 H 1.09000 * 109.47318 * 210.02283 * 1 2 3 25 25 H 1.09000 * 109.47161 * 330.02913 * 1 2 3 26 26 H 1.08007 * 126.04031 * 359.97438 * 3 2 1 27 27 H 1.09006 * 109.51904 * 297.49677 * 8 6 5 28 28 H 1.08999 * 109.52299 * 57.61914 * 8 6 5 29 29 H 1.09002 * 109.54766 * 62.88355 * 9 8 6 30 30 H 1.09002 * 109.54680 * 183.06117 * 9 8 6 31 31 H 1.08998 * 109.52156 * 176.88310 * 10 9 8 32 32 H 1.08999 * 109.52298 * 297.01022 * 10 9 8 33 33 H 0.97001 * 119.99567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5040 -0.9819 0.0018 6 6 4.4835 -2.1270 0.0022 7 1 3.9656 -3.0483 0.2688 8 6 5.0996 -2.2726 -1.3916 9 6 6.1374 -3.3989 -1.3676 10 6 7.1881 -3.0873 -0.2974 11 6 6.4914 -2.9103 1.0543 12 1 5.9999 -3.8418 1.3347 13 6 7.5117 -2.5451 2.1016 14 1 8.5528 -2.4493 1.8308 15 6 7.1160 -2.3335 3.4052 16 7 8.0065 -2.0153 4.3193 17 14 5.3154 -2.5000 3.8736 18 1 5.0368 -3.9014 4.2783 19 1 5.0119 -1.5882 5.0057 20 1 4.4660 -2.1429 2.7090 21 8 5.5177 -1.8691 0.9540 22 7 2.2199 -1.1083 0.0071 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8392 2.1308 -0.0004 27 1 4.3177 -2.5132 -2.1121 28 1 5.5819 -1.3375 -1.6762 29 1 5.6459 -4.3428 -1.1320 30 1 6.6189 -3.4720 -2.3428 31 1 7.8999 -3.9105 -0.2353 32 1 7.7145 -2.1697 -0.5599 33 1 7.7280 -1.8660 5.2364 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379866621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:00 Heat of formation + Delta-G solvation = -29.346669 kcal Electronic energy + Delta-G solvation = -16841.889564 eV Core-core repulsion = 14186.370713 eV Total energy + Delta-G solvation = -2655.518851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04237 -39.98536 -35.14012 -34.41409 -33.69928 -31.73847 -28.65442 -28.13826 -26.33094 -23.92418 -22.91656 -21.37084 -20.35973 -19.07508 -18.70374 -17.20228 -16.88484 -16.37260 -15.97333 -15.84448 -15.37160 -14.91055 -14.61024 -14.32241 -14.06978 -13.72553 -13.37006 -13.30364 -12.99597 -12.84860 -12.45795 -12.17294 -12.09863 -11.93490 -11.74216 -11.58065 -11.06285 -10.79917 -10.65238 -10.40760 -10.03105 -9.60050 -8.39185 -6.50180 -0.31460 0.42665 0.87756 1.30738 1.34871 1.60457 1.73940 2.36577 2.55391 3.05688 3.69712 3.86253 3.95270 4.02491 4.22226 4.27530 4.31943 4.35532 4.40402 4.68735 4.78191 4.84521 4.86891 4.93551 4.97017 5.01884 5.17186 5.20886 5.36732 5.52176 5.55665 6.20868 6.49993 6.72609 6.75915 7.26136 8.74568 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.008667 C = 0.007175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.295995 B = 3229.719820 C = 3901.243061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.042 3.958 3 C -0.266 4.266 4 S 0.148 5.852 5 C 0.045 3.955 6 C 0.148 3.852 7 H 0.068 0.932 8 C -0.129 4.129 9 C -0.112 4.112 10 C -0.131 4.131 11 C 0.187 3.813 12 H 0.016 0.984 13 C -0.520 4.520 14 H 0.049 0.951 15 C 0.036 3.964 16 N -0.933 5.933 17 Si 0.928 3.072 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.221 1.221 21 O -0.391 6.391 22 N -0.495 5.495 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.210 0.790 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.784 4.039 -12.756 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.405 4.405 4 S 0.404 5.596 5 C -0.232 4.232 6 C 0.086 3.914 7 H 0.085 0.915 8 C -0.168 4.168 9 C -0.150 4.150 10 C -0.169 4.169 11 C 0.131 3.869 12 H 0.033 0.967 13 C -0.557 4.557 14 H 0.067 0.933 15 C -0.165 4.165 16 N -0.572 5.572 17 Si 0.753 3.247 18 H -0.204 1.204 19 H -0.222 1.222 20 H -0.143 1.143 21 O -0.312 6.312 22 N -0.213 5.213 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.227 0.773 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.985 4.263 -12.474 18.504 hybrid contribution -1.007 -0.230 0.846 1.335 sum -13.992 4.033 -11.628 18.635 Atomic orbital electron populations 1.20438 0.84548 1.04074 1.04002 1.20892 0.99865 0.86150 1.02054 1.27311 0.94647 1.05217 1.13321 1.84219 1.07648 1.01909 1.65866 1.26724 0.93732 0.99035 1.03659 1.20298 0.87127 0.92078 0.91859 0.91465 1.22109 0.99426 1.00623 0.94647 1.21615 0.95869 0.97763 0.99714 1.21984 0.98483 1.01623 0.94798 1.20059 0.86070 0.86655 0.94088 0.96678 1.21199 0.93680 1.48728 0.92069 0.93251 1.25786 1.01555 0.92630 0.96490 1.70039 1.36278 1.47821 1.03089 0.86148 0.82267 0.77623 0.78683 1.20352 1.22247 1.14333 1.88330 1.37251 1.47434 1.58170 1.66095 1.04442 1.33505 1.17231 0.89184 0.91358 0.88451 0.77307 0.89321 0.91157 0.91153 0.88884 0.91138 0.92662 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.31 71.24 0.73 -0.58 16 2 C 0.04 1.17 6.74 41.52 0.28 1.45 16 3 C -0.27 -6.65 11.13 66.78 0.74 -5.91 16 4 S 0.15 4.69 23.01 -56.49 -1.30 3.39 16 5 C 0.05 1.63 6.35 88.52 0.56 2.19 16 6 C 0.15 5.54 2.98 29.88 0.09 5.62 16 7 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 8 C -0.13 -3.87 5.40 30.68 0.17 -3.71 16 9 C -0.11 -3.22 6.03 30.71 0.19 -3.04 16 10 C -0.13 -4.95 5.36 30.69 0.16 -4.79 16 11 C 0.19 8.75 1.99 29.88 0.06 8.81 16 12 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 13 C -0.52 -29.89 9.38 25.60 0.24 -29.65 16 14 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 15 C 0.04 2.13 5.47 84.65 0.46 2.59 16 16 N -0.93 -58.76 13.96 21.45 0.30 -58.46 16 17 Si 0.93 46.98 26.99 68.60 1.85 48.83 16 18 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 20 H -0.22 -10.90 5.16 99.48 0.51 -10.39 16 21 O -0.39 -17.93 6.78 -148.98 -1.01 -18.94 16 22 N -0.50 -17.10 10.53 -179.40 -1.89 -18.99 16 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 26 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -69.43 285.09 2.54 -66.89 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.90 Total: 4.27 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.69 Total: -27.00 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.59 Total: -77.45 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.01 Total: -18.94 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.85 Total: 48.83 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -69.43 2.54 -66.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379866621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.547 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds