Wall clock time and date at job start Mon Mar 30 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29028 * 124.91881 * 2 1 4 4 C 1.31790 * 117.12532 * 179.81456 * 3 2 1 5 5 C 1.33639 * 114.49836 * 0.48009 * 4 3 2 6 6 C 1.50699 * 126.03543 * 179.79098 * 5 4 3 7 7 H 1.09007 * 110.27591 * 27.06894 * 6 5 4 8 8 C 1.54951 * 110.30690 * 264.97842 * 6 5 4 9 9 C 1.55302 * 100.94166 * 204.63945 * 8 6 5 10 10 C 1.54382 * 102.25179 * 34.13397 * 9 8 6 11 11 C 1.53005 * 109.83309 * 219.03565 * 10 9 8 12 12 C 1.50706 * 109.83104 * 98.15810 * 10 9 8 13 13 H 1.07999 * 119.99785 * 4.68193 * 12 10 9 14 14 C 1.37879 * 119.99958 * 184.68694 * 12 10 9 15 15 N 1.31517 * 119.99963 * 6.44335 * 14 12 10 16 16 Si 1.86797 * 119.99907 * 186.43870 * 14 12 10 17 17 H 1.48501 * 109.46857 * 85.20676 * 16 14 12 18 18 H 1.48504 * 109.47141 * 205.20885 * 16 14 12 19 19 H 1.48507 * 109.47044 * 325.20852 * 16 14 12 20 20 O 1.43236 * 107.58940 * 338.64066 * 10 9 8 21 21 S 1.70982 * 124.91615 * 180.30986 * 2 1 3 22 22 H 1.09005 * 109.46874 * 269.69498 * 1 2 3 23 23 H 1.08992 * 109.47676 * 149.69022 * 1 2 3 24 24 H 1.09002 * 109.47259 * 29.68767 * 1 2 3 25 25 H 1.08004 * 122.74873 * 180.22735 * 4 3 2 26 26 H 1.08997 * 111.12346 * 322.56480 * 8 6 5 27 27 H 1.09002 * 111.12176 * 86.72514 * 8 6 5 28 28 H 1.09001 * 110.84933 * 152.31970 * 9 8 6 29 29 H 1.08997 * 110.85152 * 275.94238 * 9 8 6 30 30 H 1.08998 * 109.46367 * 54.43688 * 11 10 9 31 31 H 1.08993 * 109.47250 * 174.43466 * 11 10 9 32 32 H 1.09003 * 109.47169 * 294.44487 * 11 10 9 33 33 H 0.96998 * 119.99898 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0038 5 6 3.9354 -0.4007 -0.0030 6 6 5.3574 -0.8995 -0.0053 7 1 6.0151 -0.1679 0.4642 8 6 5.8232 -1.1897 -1.4543 9 6 6.9425 -2.2358 -1.2003 10 6 6.4007 -3.0045 0.0241 11 6 7.5483 -3.3293 0.9826 12 6 5.7348 -4.2793 -0.4263 13 1 5.7620 -4.5639 -1.4677 14 6 5.0909 -5.0820 0.4913 15 7 4.9473 -4.6759 1.7340 16 14 4.4223 -6.7464 -0.0305 17 1 5.5014 -7.7628 0.0571 18 1 3.3034 -7.1336 0.8659 19 1 3.9306 -6.6658 -1.4295 20 8 5.4445 -2.1609 0.6764 21 16 2.4856 -1.4020 -0.0076 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3634 -0.8871 -0.5186 24 1 -0.3634 0.8928 -0.5090 25 1 4.2532 1.7000 0.0077 26 1 5.0150 -1.6155 -2.0489 27 1 6.2240 -0.2921 -1.9253 28 1 7.0542 -2.9003 -2.0571 29 1 7.8862 -1.7446 -0.9634 30 1 8.0778 -2.4118 1.2393 31 1 7.1474 -3.7831 1.8888 32 1 8.2373 -4.0241 0.5022 33 1 4.4946 -5.2408 2.3796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389751911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:04 Heat of formation + Delta-G solvation = -5.604599 kcal Electronic energy + Delta-G solvation = -16915.944236 eV Core-core repulsion = 14261.454919 eV Total energy + Delta-G solvation = -2654.489318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30782 -38.27406 -33.28390 -31.96262 -31.04993 -30.12263 -27.76456 -25.24044 -24.31018 -23.05676 -21.00419 -19.51319 -18.92021 -17.46658 -16.75745 -15.18797 -14.87253 -14.49227 -14.31932 -13.79557 -13.41029 -13.08996 -12.73995 -12.58975 -12.38707 -12.06596 -11.63714 -11.41597 -10.98779 -10.88105 -10.85217 -10.61595 -10.49704 -10.38027 -10.01772 -9.77088 -9.19149 -9.07668 -8.64531 -8.49814 -8.26996 -7.90017 -5.96268 -4.10849 1.20585 1.91089 2.42781 3.23889 3.29014 3.36341 3.38184 4.41601 4.53795 4.90930 5.33239 5.38741 5.44786 5.47231 5.58492 5.62668 5.70082 5.91121 5.98283 6.13863 6.27761 6.35689 6.48993 6.61207 6.71584 6.79496 6.83820 7.04393 7.23179 7.75347 7.95261 8.16510 8.32408 8.53667 9.02066 9.59142 11.07021 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.008758 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.134750 B = 3196.152467 C = 4048.432818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.011 4.011 3 N -0.480 5.480 4 C 0.011 3.989 5 C -0.194 4.194 6 C 0.143 3.857 7 H 0.068 0.932 8 C -0.137 4.137 9 C -0.142 4.142 10 C 0.227 3.773 11 C -0.135 4.135 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.084 3.916 15 N -0.851 5.851 16 Si 0.880 3.120 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.334 6.334 21 S 0.208 5.792 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.167 0.833 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 6.929 -3.670 8.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.287 4.287 3 N -0.196 5.196 4 C -0.140 4.140 5 C -0.316 4.316 6 C 0.082 3.918 7 H 0.086 0.914 8 C -0.175 4.175 9 C -0.180 4.180 10 C 0.190 3.810 11 C -0.192 4.192 12 C -0.575 4.575 13 H 0.077 0.923 14 C -0.122 4.122 15 N -0.486 5.486 16 Si 0.707 3.293 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.254 6.254 21 S 0.463 5.537 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.184 0.816 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.064 6.255 -3.299 8.156 hybrid contribution 0.437 -0.091 -0.365 0.576 sum -3.628 6.164 -3.664 8.036 Atomic orbital electron populations 1.20292 0.86048 1.03412 1.03248 1.27088 1.01796 0.93472 1.06342 1.66236 1.04650 1.32374 1.16337 1.21442 0.91119 0.95466 1.06012 1.26335 1.00556 0.96172 1.08565 1.21000 0.87084 0.90803 0.92950 0.91410 1.23166 0.99311 0.98746 0.96272 1.23234 0.96545 0.97182 1.01007 1.19702 0.86202 0.88573 0.86561 1.21926 0.97007 0.98056 1.02242 1.21167 1.37450 1.04577 0.94275 0.92316 1.24968 0.94937 0.97302 0.94987 1.70060 1.40113 1.35698 1.02773 0.86823 0.78750 0.84982 0.78700 1.20554 1.21161 1.19910 1.88892 1.63080 1.21215 1.52167 1.84668 0.95435 1.08583 1.64974 0.90260 0.90564 0.90095 0.81585 0.90904 0.91834 0.91035 0.92817 0.96718 0.90611 0.93983 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.46 36.00 0.38 -0.47 16 2 C -0.01 -0.18 7.39 -13.46 -0.10 -0.28 16 3 N -0.48 -8.59 10.54 -11.86 -0.13 -8.71 16 4 C 0.01 0.19 11.25 -19.18 -0.22 -0.02 16 5 C -0.19 -3.74 5.65 -35.92 -0.20 -3.95 16 6 C 0.14 2.87 3.91 -26.85 -0.11 2.77 16 7 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.14 -2.52 6.56 -24.48 -0.16 -2.68 16 9 C -0.14 -2.82 6.08 -24.79 -0.15 -2.97 16 10 C 0.23 5.45 0.82 -91.04 -0.07 5.37 16 11 C -0.13 -3.14 8.54 37.16 0.32 -2.82 16 12 C -0.54 -14.19 8.21 -34.44 -0.28 -14.47 16 13 H 0.06 1.54 7.47 -52.49 -0.39 1.15 16 14 C 0.08 2.27 5.23 -17.82 -0.09 2.17 16 15 N -0.85 -23.80 11.26 55.43 0.62 -23.18 16 16 Si 0.88 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 O -0.33 -8.25 9.20 -35.23 -0.32 -8.57 16 21 S 0.21 3.96 22.91 -107.50 -2.46 1.50 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.17 2.46 8.06 -52.48 -0.42 2.03 16 26 H 0.07 1.41 8.05 -51.93 -0.42 0.99 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.40 7.59 -51.93 -0.39 1.01 16 29 H 0.05 0.96 7.80 -51.93 -0.40 0.56 16 30 H 0.01 0.29 8.06 -51.93 -0.42 -0.12 16 31 H 0.07 1.96 6.79 -51.93 -0.35 1.61 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -29.56 289.84 -8.11 -37.67 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.47 Total: -1.39 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -0.69 Total: -17.34 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.50 Total: -31.89 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.32 Total: -8.57 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.46 Total: 1.50 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.56 -8.11 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389751911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.066 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds