Wall clock time and date at job start Mon Mar 30 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29028 * 124.91881 * 2 1 4 4 C 1.31790 * 117.12532 * 179.81456 * 3 2 1 5 5 C 1.33639 * 114.49836 * 0.48009 * 4 3 2 6 6 C 1.50699 * 126.03543 * 179.79098 * 5 4 3 7 7 H 1.09007 * 110.27591 * 27.06894 * 6 5 4 8 8 C 1.54951 * 110.30690 * 264.97842 * 6 5 4 9 9 C 1.55302 * 100.94166 * 204.63945 * 8 6 5 10 10 C 1.54382 * 102.25179 * 34.13397 * 9 8 6 11 11 C 1.53005 * 109.83309 * 219.03565 * 10 9 8 12 12 C 1.50706 * 109.83104 * 98.15810 * 10 9 8 13 13 H 1.07999 * 119.99785 * 4.68193 * 12 10 9 14 14 C 1.37879 * 119.99958 * 184.68694 * 12 10 9 15 15 N 1.31517 * 119.99963 * 6.44335 * 14 12 10 16 16 Si 1.86797 * 119.99907 * 186.43870 * 14 12 10 17 17 H 1.48501 * 109.46857 * 85.20676 * 16 14 12 18 18 H 1.48504 * 109.47141 * 205.20885 * 16 14 12 19 19 H 1.48507 * 109.47044 * 325.20852 * 16 14 12 20 20 O 1.43236 * 107.58940 * 338.64066 * 10 9 8 21 21 S 1.70982 * 124.91615 * 180.30986 * 2 1 3 22 22 H 1.09005 * 109.46874 * 269.69498 * 1 2 3 23 23 H 1.08992 * 109.47676 * 149.69022 * 1 2 3 24 24 H 1.09002 * 109.47259 * 29.68767 * 1 2 3 25 25 H 1.08004 * 122.74873 * 180.22735 * 4 3 2 26 26 H 1.08997 * 111.12346 * 322.56480 * 8 6 5 27 27 H 1.09002 * 111.12176 * 86.72514 * 8 6 5 28 28 H 1.09001 * 110.84933 * 152.31970 * 9 8 6 29 29 H 1.08997 * 110.85152 * 275.94238 * 9 8 6 30 30 H 1.08998 * 109.46367 * 54.43688 * 11 10 9 31 31 H 1.08993 * 109.47250 * 174.43466 * 11 10 9 32 32 H 1.09003 * 109.47169 * 294.44487 * 11 10 9 33 33 H 0.96998 * 119.99898 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0038 5 6 3.9354 -0.4007 -0.0030 6 6 5.3574 -0.8995 -0.0053 7 1 6.0151 -0.1679 0.4642 8 6 5.8232 -1.1897 -1.4543 9 6 6.9425 -2.2358 -1.2003 10 6 6.4007 -3.0045 0.0241 11 6 7.5483 -3.3293 0.9826 12 6 5.7348 -4.2793 -0.4263 13 1 5.7620 -4.5639 -1.4677 14 6 5.0909 -5.0820 0.4913 15 7 4.9473 -4.6759 1.7340 16 14 4.4223 -6.7464 -0.0305 17 1 5.5014 -7.7628 0.0571 18 1 3.3034 -7.1336 0.8659 19 1 3.9306 -6.6658 -1.4295 20 8 5.4445 -2.1609 0.6764 21 16 2.4856 -1.4020 -0.0076 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3634 -0.8871 -0.5186 24 1 -0.3634 0.8928 -0.5090 25 1 4.2532 1.7000 0.0077 26 1 5.0150 -1.6155 -2.0489 27 1 6.2240 -0.2921 -1.9253 28 1 7.0542 -2.9003 -2.0571 29 1 7.8862 -1.7446 -0.9634 30 1 8.0778 -2.4118 1.2393 31 1 7.1474 -3.7831 1.8888 32 1 8.2373 -4.0241 0.5022 33 1 4.4946 -5.2408 2.3796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389751911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:03 Heat of formation + Delta-G solvation = -23.230578 kcal Electronic energy + Delta-G solvation = -16916.708556 eV Core-core repulsion = 14261.454919 eV Total energy + Delta-G solvation = -2655.253638 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73139 -39.88352 -35.08572 -33.46488 -32.73951 -31.63873 -29.22207 -27.20898 -25.80808 -24.47406 -22.51490 -21.30935 -20.28504 -18.93167 -18.57163 -16.71098 -16.67763 -16.03076 -15.78016 -15.37997 -14.94241 -14.59398 -14.26775 -14.09202 -13.51422 -13.44540 -13.30605 -13.11866 -12.73933 -12.64781 -12.37240 -12.26527 -12.19497 -12.08038 -11.78386 -11.43241 -10.93581 -10.57009 -10.47074 -10.14541 -9.79991 -9.51116 -7.98250 -6.17805 -0.16663 0.52443 1.04376 1.40895 1.43237 1.50416 1.88373 2.45977 3.13463 3.34073 3.58251 3.89738 3.96423 4.20977 4.22925 4.45428 4.62385 4.67266 4.69117 4.76050 4.81879 4.91068 5.02559 5.04275 5.10107 5.22891 5.32908 5.37417 5.42808 5.73669 6.03196 6.37442 6.66550 6.79386 7.15242 7.55999 9.03648 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.008758 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.134750 B = 3196.152467 C = 4048.432818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.016 3.984 3 N -0.496 5.496 4 C 0.022 3.978 5 C -0.217 4.217 6 C 0.136 3.864 7 H 0.085 0.915 8 C -0.125 4.125 9 C -0.136 4.136 10 C 0.212 3.788 11 C -0.128 4.128 12 C -0.549 4.549 13 H 0.052 0.948 14 C 0.042 3.958 15 N -0.879 5.879 16 Si 0.932 3.068 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.271 1.271 20 O -0.366 6.366 21 S 0.142 5.858 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.195 0.805 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 8.299 -4.594 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.261 4.261 3 N -0.212 5.212 4 C -0.128 4.128 5 C -0.338 4.338 6 C 0.076 3.924 7 H 0.103 0.897 8 C -0.164 4.164 9 C -0.174 4.174 10 C 0.175 3.825 11 C -0.186 4.186 12 C -0.587 4.587 13 H 0.070 0.930 14 C -0.162 4.162 15 N -0.515 5.515 16 Si 0.759 3.241 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.196 1.196 20 O -0.285 6.285 21 S 0.397 5.603 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.212 0.788 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.376 7.628 -4.239 9.762 hybrid contribution 0.486 -0.426 -0.076 0.651 sum -3.890 7.202 -4.315 9.253 Atomic orbital electron populations 1.20546 0.82790 1.05117 1.04815 1.27809 1.03377 0.91630 1.03285 1.66354 1.04889 1.32374 1.17576 1.21867 0.91543 0.95551 1.03877 1.26246 0.99917 0.96524 1.11133 1.21216 0.88112 0.89472 0.93622 0.89743 1.23106 0.98229 0.99638 0.95388 1.23150 0.97902 0.97275 0.99072 1.19794 0.86127 0.88444 0.88176 1.21824 0.97134 0.98829 1.00778 1.21509 1.37196 1.06047 0.93902 0.92975 1.25580 0.95450 1.00094 0.95055 1.70193 1.41174 1.36584 1.03577 0.85993 0.78166 0.81694 0.78292 1.20021 1.21263 1.19557 1.88823 1.63391 1.23136 1.53198 1.84859 0.97408 1.11335 1.66673 0.88592 0.88846 0.88325 0.78836 0.92552 0.88134 0.91184 0.90473 0.94632 0.93939 0.93483 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.46 71.23 0.75 -0.82 16 2 C 0.02 0.50 7.39 88.52 0.65 1.15 16 3 N -0.50 -16.68 10.54 -191.44 -2.02 -18.70 16 4 C 0.02 0.74 11.25 83.66 0.94 1.68 16 5 C -0.22 -8.15 5.65 24.64 0.14 -8.01 16 6 C 0.14 5.32 3.91 30.51 0.12 5.44 16 7 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 8 C -0.13 -4.39 6.56 32.05 0.21 -4.18 16 9 C -0.14 -5.20 6.08 31.85 0.19 -5.00 16 10 C 0.21 10.14 0.82 -11.07 -0.01 10.13 16 11 C -0.13 -5.95 8.54 71.98 0.61 -5.34 16 12 C -0.55 -29.29 8.21 25.60 0.21 -29.08 16 13 H 0.05 2.76 7.47 -2.91 -0.02 2.74 16 14 C 0.04 2.26 5.23 84.65 0.44 2.71 16 15 N -0.88 -50.40 11.26 21.45 0.24 -50.16 16 16 Si 0.93 43.03 29.54 68.60 2.03 45.06 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 O -0.37 -18.12 9.20 -148.98 -1.37 -19.49 16 21 S 0.14 5.41 22.91 -56.49 -1.29 4.12 16 22 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 23 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.19 5.12 8.06 -2.91 -0.02 5.10 16 26 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 27 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 2.65 7.59 -2.39 -0.02 2.64 16 29 H 0.08 2.55 7.80 -2.39 -0.02 2.53 16 30 H 0.03 1.44 8.06 -2.39 -0.02 1.43 16 31 H 0.04 2.23 6.79 -2.39 -0.02 2.22 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -63.92 289.84 2.94 -60.98 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.10 Total: 9.52 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.26 Total: -31.31 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -1.78 Total: -68.86 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.37 Total: -19.49 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.29 Total: 4.12 kcal Total: -63.92 2.94 -60.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389751911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.746 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds