Wall clock time and date at job start Mon Mar 30 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29032 * 124.91368 * 2 1 4 4 C 1.31782 * 117.12374 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.74909 * 180.02562 * 4 3 2 6 6 C 1.33637 * 114.50126 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.03815 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.34906 * 17.14632 * 7 6 4 9 9 C 1.54947 * 110.31167 * 255.00177 * 7 6 4 10 10 C 1.55307 * 100.94091 * 204.63747 * 9 7 6 11 11 C 1.54382 * 102.25087 * 34.13633 * 10 9 7 12 12 H 1.09001 * 109.83043 * 98.15720 * 11 10 9 13 13 C 1.50699 * 109.82561 * 219.12648 * 11 10 9 14 14 H 1.08002 * 120.00779 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99603 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00422 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99840 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47117 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47088 * 119.99775 * 17 15 13 20 20 H 1.48500 * 109.47014 * 240.00073 * 17 15 13 21 21 O 1.43237 * 107.59016 * 338.63715 * 11 10 9 22 22 S 1.70975 * 124.91900 * 180.32397 * 2 1 3 23 23 H 1.09001 * 109.47604 * 89.97411 * 1 2 3 24 24 H 1.09004 * 109.46518 * 209.96887 * 1 2 3 25 25 H 1.08993 * 109.47534 * 329.96911 * 1 2 3 26 26 H 1.09003 * 109.47572 * 270.00673 * 5 4 3 27 27 H 1.09007 * 109.47076 * 30.00399 * 5 4 3 28 28 H 1.09001 * 109.47527 * 150.00161 * 5 4 3 29 29 H 1.09003 * 111.12327 * 86.71836 * 9 7 6 30 30 H 1.08996 * 111.12316 * 322.55927 * 9 7 6 31 31 H 1.09000 * 110.84567 * 152.32497 * 10 9 7 32 32 H 1.08997 * 110.85084 * 275.94100 * 10 9 7 33 33 H 0.97003 * 120.00724 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9354 -0.4005 -0.0015 7 6 5.3575 -0.8992 -0.0029 8 1 6.0386 -0.1033 0.2984 9 6 5.7395 -1.4313 -1.4071 10 6 6.8773 -2.4250 -1.0463 11 6 6.4117 -2.9741 0.3194 12 1 5.9168 -3.9355 0.1821 13 6 7.5965 -3.1337 1.2369 14 1 8.5860 -2.8725 0.8918 15 6 7.4171 -3.6121 2.5176 16 7 6.2121 -3.9287 2.9385 17 14 8.8856 -3.8092 3.6552 18 1 10.1206 -3.3863 2.9472 19 1 8.6932 -2.9660 4.8624 20 1 9.0105 -5.2325 4.0602 21 8 5.4907 -2.0283 0.8751 22 16 2.4857 -1.4019 -0.0079 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3632 -0.8903 0.5134 25 1 -0.3634 0.8896 0.5143 26 1 4.7664 2.3017 -1.0276 27 1 4.0906 2.8789 0.5146 28 1 5.4433 1.7221 0.5133 29 1 6.1075 -0.6276 -2.0449 30 1 4.9003 -1.9474 -1.8733 31 1 6.9424 -3.2246 -1.7841 32 1 7.8306 -1.9052 -0.9509 33 1 6.0859 -4.2657 3.8393 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394728791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:13 Heat of formation + Delta-G solvation = -13.062783 kcal Electronic energy + Delta-G solvation = -16579.820850 eV Core-core repulsion = 13925.008121 eV Total energy + Delta-G solvation = -2654.812729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.65450 -38.07857 -33.31347 -32.38898 -30.98064 -29.62757 -28.87171 -26.55906 -24.07033 -22.50403 -21.17238 -20.29011 -18.52490 -17.51844 -16.54597 -15.56732 -14.96035 -14.83611 -14.31060 -14.09589 -13.35731 -13.15705 -13.08197 -12.61219 -12.48567 -12.22941 -11.96209 -11.82951 -11.76226 -10.98182 -10.95640 -10.86096 -10.61815 -10.44029 -10.26397 -9.91514 -9.29292 -9.25917 -8.80695 -8.55613 -8.20833 -7.90878 -6.00629 -4.15118 1.07248 1.74827 2.23083 3.07262 3.28839 3.36993 3.39974 4.33623 4.41332 4.89470 5.16701 5.31171 5.36256 5.43691 5.45272 5.47337 5.56518 5.68340 5.82105 5.83708 5.94541 6.10186 6.15296 6.28244 6.42685 6.53285 6.60024 6.64053 6.75201 7.58230 7.86245 8.07345 8.24046 8.50914 8.99437 9.56925 11.05839 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.006245 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.390295 B = 4482.311665 C = 4701.597493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.011 3.989 3 N -0.473 5.473 4 C 0.046 3.954 5 C -0.074 4.074 6 C -0.193 4.193 7 C 0.147 3.853 8 H 0.077 0.923 9 C -0.147 4.147 10 C -0.144 4.144 11 C 0.204 3.796 12 H 0.040 0.960 13 C -0.545 4.545 14 H 0.061 0.939 15 C 0.079 3.921 16 N -0.861 5.861 17 Si 0.889 3.111 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 O -0.349 6.349 22 S 0.160 5.840 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 6.849 -7.575 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.267 4.267 3 N -0.189 5.189 4 C -0.086 4.086 5 C -0.134 4.134 6 C -0.314 4.314 7 C 0.086 3.914 8 H 0.095 0.905 9 C -0.185 4.185 10 C -0.182 4.182 11 C 0.149 3.851 12 H 0.058 0.942 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.127 4.127 16 N -0.497 5.497 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 O -0.269 6.269 22 S 0.417 5.583 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.133 6.162 -7.236 12.509 hybrid contribution 1.435 0.603 0.591 1.665 sum -6.698 6.765 -6.644 11.609 Atomic orbital electron populations 1.20324 0.85740 1.03758 1.03235 1.26883 1.01522 0.92439 1.05818 1.66089 1.04363 1.32121 1.16353 1.20008 0.90151 0.93891 1.04560 1.20319 0.96174 0.94508 1.02369 1.26083 1.00186 0.95501 1.09665 1.21055 0.86815 0.92839 0.90711 0.90526 1.23288 0.99352 0.99288 0.96565 1.23228 0.97744 0.97811 0.99387 1.20352 0.88352 0.88338 0.88019 0.94202 1.21406 0.92820 1.45270 0.98782 0.92115 1.25066 0.95494 0.94031 0.98096 1.70039 1.20735 1.41371 1.17570 0.86609 0.83047 0.77740 0.80963 1.19662 1.20876 1.20896 1.88862 1.65674 1.28756 1.43585 1.84134 0.96566 1.10738 1.66910 0.90201 0.90369 0.89855 0.91174 0.91094 0.90512 0.91312 0.91546 0.91929 0.91273 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.46 36.00 0.38 -0.39 16 2 C 0.01 0.17 7.39 -13.46 -0.10 0.07 16 3 N -0.47 -8.26 10.53 -8.06 -0.08 -8.34 16 4 C 0.05 0.80 6.74 -84.23 -0.57 0.24 16 5 C -0.07 -1.06 10.03 36.00 0.36 -0.70 16 6 C -0.19 -3.67 5.57 -35.92 -0.20 -3.87 16 7 C 0.15 3.00 3.72 -26.86 -0.10 2.90 16 8 H 0.08 1.53 6.51 -51.93 -0.34 1.19 16 9 C -0.15 -2.62 6.56 -24.48 -0.16 -2.78 16 10 C -0.14 -2.89 6.53 -24.78 -0.16 -3.05 16 11 C 0.20 5.19 3.35 -27.16 -0.09 5.10 16 12 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.55 -15.11 8.75 -34.44 -0.30 -15.41 16 14 H 0.06 1.63 7.52 -52.49 -0.39 1.24 16 15 C 0.08 2.24 5.41 -17.82 -0.10 2.14 16 16 N -0.86 -25.61 12.93 55.43 0.72 -24.89 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 O -0.35 -8.98 10.11 -35.23 -0.36 -9.34 16 22 S 0.16 2.79 23.08 -107.50 -2.48 0.31 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.08 6.63 -51.93 -0.34 0.74 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.36 7.65 -51.93 -0.40 0.97 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -31.81 291.82 -8.28 -40.09 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.41 Total: -2.78 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -1.04 Total: -15.75 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.63 Total: -33.24 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.36 Total: -9.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.48 Total: 0.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.81 -8.28 -40.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394728791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.025 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds