Wall clock time and date at job start Mon Mar 30 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29032 * 124.91368 * 2 1 4 4 C 1.31782 * 117.12374 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.74909 * 180.02562 * 4 3 2 6 6 C 1.33637 * 114.50126 * 0.02562 * 4 3 2 7 7 C 1.50698 * 126.03815 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.34906 * 17.14632 * 7 6 4 9 9 C 1.54947 * 110.31167 * 255.00177 * 7 6 4 10 10 C 1.55307 * 100.94091 * 204.63747 * 9 7 6 11 11 C 1.54382 * 102.25087 * 34.13633 * 10 9 7 12 12 H 1.09001 * 109.83043 * 98.15720 * 11 10 9 13 13 C 1.50699 * 109.82561 * 219.12648 * 11 10 9 14 14 H 1.08002 * 120.00779 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99603 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00422 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99840 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47117 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47088 * 119.99775 * 17 15 13 20 20 H 1.48500 * 109.47014 * 240.00073 * 17 15 13 21 21 O 1.43237 * 107.59016 * 338.63715 * 11 10 9 22 22 S 1.70975 * 124.91900 * 180.32397 * 2 1 3 23 23 H 1.09001 * 109.47604 * 89.97411 * 1 2 3 24 24 H 1.09004 * 109.46518 * 209.96887 * 1 2 3 25 25 H 1.08993 * 109.47534 * 329.96911 * 1 2 3 26 26 H 1.09003 * 109.47572 * 270.00673 * 5 4 3 27 27 H 1.09007 * 109.47076 * 30.00399 * 5 4 3 28 28 H 1.09001 * 109.47527 * 150.00161 * 5 4 3 29 29 H 1.09003 * 111.12327 * 86.71836 * 9 7 6 30 30 H 1.08996 * 111.12316 * 322.55927 * 9 7 6 31 31 H 1.09000 * 110.84567 * 152.32497 * 10 9 7 32 32 H 1.08997 * 110.85084 * 275.94100 * 10 9 7 33 33 H 0.97003 * 120.00724 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 0.0000 6 6 3.9354 -0.4005 -0.0015 7 6 5.3575 -0.8992 -0.0029 8 1 6.0386 -0.1033 0.2984 9 6 5.7395 -1.4313 -1.4071 10 6 6.8773 -2.4250 -1.0463 11 6 6.4117 -2.9741 0.3194 12 1 5.9168 -3.9355 0.1821 13 6 7.5965 -3.1337 1.2369 14 1 8.5860 -2.8725 0.8918 15 6 7.4171 -3.6121 2.5176 16 7 6.2121 -3.9287 2.9385 17 14 8.8856 -3.8092 3.6552 18 1 10.1206 -3.3863 2.9472 19 1 8.6932 -2.9660 4.8624 20 1 9.0105 -5.2325 4.0602 21 8 5.4907 -2.0283 0.8751 22 16 2.4857 -1.4019 -0.0079 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3632 -0.8903 0.5134 25 1 -0.3634 0.8896 0.5143 26 1 4.7664 2.3017 -1.0276 27 1 4.0906 2.8789 0.5146 28 1 5.4433 1.7221 0.5133 29 1 6.1075 -0.6276 -2.0449 30 1 4.9003 -1.9474 -1.8733 31 1 6.9424 -3.2246 -1.7841 32 1 7.8306 -1.9052 -0.9509 33 1 6.0859 -4.2657 3.8393 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394728791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:12 Heat of formation + Delta-G solvation = -33.375038 kcal Electronic energy + Delta-G solvation = -16580.701656 eV Core-core repulsion = 13925.008121 eV Total energy + Delta-G solvation = -2655.693534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.00495 -39.76956 -34.96824 -34.08461 -32.66977 -31.11871 -30.03533 -28.24282 -25.83750 -23.71704 -22.74663 -22.07519 -19.91002 -18.87332 -18.59880 -17.07816 -16.76945 -16.15820 -16.06221 -15.54303 -14.94601 -14.48430 -14.21542 -14.02602 -13.94665 -13.70222 -13.40817 -13.16855 -12.91142 -12.82404 -12.44698 -12.41267 -12.33545 -12.11626 -12.02909 -11.59854 -11.12383 -10.74864 -10.58103 -10.23180 -9.85415 -9.46086 -8.13188 -6.35015 -0.24870 0.43764 0.90713 1.39253 1.40503 1.52592 1.76382 2.40382 3.04380 3.19363 3.54607 3.82687 3.84079 4.08447 4.18946 4.28635 4.52996 4.57782 4.61283 4.67477 4.73216 4.75097 4.84310 4.90734 4.99962 5.09697 5.11328 5.18438 5.39617 5.59658 5.73940 6.17362 6.56662 6.75905 6.99595 7.42199 8.93730 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028907 B = 0.006245 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.390295 B = 4482.311665 C = 4701.597493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.034 3.966 3 N -0.494 5.494 4 C 0.050 3.950 5 C -0.075 4.075 6 C -0.229 4.229 7 C 0.142 3.858 8 H 0.078 0.922 9 C -0.131 4.131 10 C -0.135 4.135 11 C 0.197 3.803 12 H 0.002 0.998 13 C -0.561 4.561 14 H 0.065 0.935 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.959 3.041 18 H -0.260 1.260 19 H -0.284 1.284 20 H -0.277 1.277 21 O -0.384 6.384 22 S 0.128 5.872 23 H 0.105 0.895 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 8.267 -8.459 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.244 4.244 3 N -0.210 5.210 4 C -0.081 4.081 5 C -0.134 4.134 6 C -0.350 4.350 7 C 0.082 3.918 8 H 0.095 0.905 9 C -0.169 4.169 10 C -0.173 4.173 11 C 0.142 3.858 12 H 0.020 0.980 13 C -0.599 4.599 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.540 5.540 17 Si 0.783 3.217 18 H -0.184 1.184 19 H -0.210 1.210 20 H -0.203 1.203 21 O -0.304 6.304 22 S 0.384 5.616 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.195 7.586 -8.138 13.818 hybrid contribution 1.330 0.221 0.837 1.587 sum -6.865 7.807 -7.301 12.703 Atomic orbital electron populations 1.20597 0.82260 1.05160 1.05258 1.27736 1.03265 0.90949 1.02411 1.66226 1.04350 1.32414 1.18004 1.20510 0.90876 0.94254 1.02480 1.20430 0.95330 0.93668 1.03938 1.25909 0.99737 0.96229 1.13104 1.21185 0.88130 0.91268 0.91254 0.90470 1.23222 0.98473 0.99518 0.95711 1.23103 0.98569 0.98804 0.96782 1.20230 0.87493 0.87553 0.90547 0.97978 1.21845 0.93810 1.44785 0.99428 0.91684 1.25948 0.98246 0.93820 0.99916 1.70190 1.23043 1.42855 1.17922 0.85522 0.79803 0.77782 0.78561 1.18374 1.20953 1.20256 1.88766 1.65687 1.30303 1.45633 1.84199 0.97204 1.12295 1.67863 0.87687 0.88679 0.88641 0.88896 0.90096 0.90721 0.87819 0.91284 0.90217 0.90751 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.46 71.24 0.75 -0.64 16 2 C 0.03 1.01 7.39 88.52 0.65 1.66 16 3 N -0.49 -16.38 10.53 -179.41 -1.89 -18.27 16 4 C 0.05 1.72 6.74 41.52 0.28 2.00 16 5 C -0.07 -1.99 10.03 71.23 0.71 -1.27 16 6 C -0.23 -8.63 5.57 24.64 0.14 -8.49 16 7 C 0.14 5.79 3.72 30.51 0.11 5.90 16 8 H 0.08 3.06 6.51 -2.38 -0.02 3.05 16 9 C -0.13 -4.51 6.56 32.05 0.21 -4.30 16 10 C -0.13 -5.32 6.53 31.86 0.21 -5.11 16 11 C 0.20 10.30 3.35 30.32 0.10 10.40 16 12 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 13 C -0.56 -31.60 8.75 25.60 0.22 -31.38 16 14 H 0.07 3.50 7.52 -2.91 -0.02 3.47 16 15 C 0.02 1.30 5.41 84.66 0.46 1.76 16 16 N -0.90 -55.42 12.93 21.45 0.28 -55.14 16 17 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 O -0.38 -20.33 10.11 -148.98 -1.51 -21.83 16 22 S 0.13 4.44 23.08 -56.49 -1.30 3.14 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.07 2.01 6.63 -2.39 -0.02 2.00 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.07 2.32 8.05 -2.39 -0.02 2.31 16 31 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.07 2.84 7.65 -2.39 -0.02 2.82 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -70.15 291.82 2.56 -67.60 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.10 Total: 7.61 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.85 Total: -29.48 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.61 Total: -73.41 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.51 Total: -21.83 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.30 Total: 3.14 kcal Total: -70.15 2.56 -67.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394728791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.222 kcal (2) G-P(sol) polarization free energy of solvation -70.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds