Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33643 * 126.03398 * 2 1 4 4 N 1.31782 * 114.50051 * 179.79009 * 3 2 1 5 5 C 1.29035 * 117.12220 * 0.46821 * 4 3 2 6 6 C 1.50699 * 124.91289 * 179.81345 * 5 4 3 7 7 H 1.09002 * 109.48570 * 194.66583 * 6 5 4 8 8 C 1.53092 * 109.47986 * 74.64399 * 6 5 4 9 9 C 1.53180 * 109.16202 * 182.40660 * 8 6 5 10 10 C 1.53177 * 109.03819 * 56.98032 * 9 8 6 11 11 C 1.53092 * 109.16050 * 303.01964 * 10 9 8 12 12 H 1.08997 * 109.49360 * 177.59771 * 11 10 9 13 13 C 1.50706 * 109.48170 * 297.62575 * 11 10 9 14 14 H 1.08005 * 119.99758 * 359.94459 * 13 11 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 O 1.42900 * 109.48344 * 314.69884 * 6 5 4 22 22 S 1.70974 * 110.16633 * 359.55025 * 5 4 3 23 23 H 1.09001 * 109.46856 * 269.95898 * 1 2 3 24 24 H 1.08997 * 109.47264 * 29.96760 * 1 2 3 25 25 H 1.09004 * 109.46857 * 149.96158 * 1 2 3 26 26 H 1.07997 * 122.75126 * 0.03125 * 3 2 1 27 27 H 1.09010 * 109.51990 * 302.31148 * 8 6 5 28 28 H 1.08998 * 109.52436 * 62.43017 * 8 6 5 29 29 H 1.09001 * 109.53931 * 176.84148 * 9 8 6 30 30 H 1.08997 * 109.54192 * 297.02031 * 9 8 6 31 31 H 1.08993 * 109.52262 * 183.11816 * 10 9 8 32 32 H 1.08998 * 109.52347 * 62.91850 * 10 9 8 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0044 5 6 3.9312 -0.4256 -0.0013 6 6 5.3533 -0.9243 -0.0017 7 1 5.3678 -1.9814 -0.2671 8 6 5.9595 -0.7394 1.3919 9 6 7.4225 -1.1925 1.3679 10 6 8.1745 -0.3967 0.2966 11 6 7.4827 -0.5948 -1.0546 12 1 7.9881 0.0030 -1.8130 13 6 7.5414 -2.0504 -1.4407 14 1 8.0245 -2.7630 -0.7885 15 6 6.9790 -2.4722 -2.6267 16 7 6.3918 -1.6043 -3.4214 17 14 7.0524 -4.2763 -3.1056 18 1 6.3802 -4.4685 -4.4157 19 1 8.4708 -4.7037 -3.2091 20 1 6.3640 -5.0911 -2.0723 21 8 6.1180 -0.1830 -0.9545 22 16 2.5437 -1.4247 -0.0009 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3633 -0.8897 -0.5145 26 1 1.9024 2.0875 0.0005 27 1 5.9083 0.3120 1.6748 28 1 5.4035 -1.3381 2.1133 29 1 7.8763 -1.0114 2.3423 30 1 7.4710 -2.2562 1.1351 31 1 9.2033 -0.7514 0.2346 32 1 8.1681 0.6616 0.5574 33 1 6.3540 -0.6675 -3.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394925625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -20.803213 kcal Electronic energy + Delta-G solvation = -16977.820433 eV Core-core repulsion = 14322.672054 eV Total energy + Delta-G solvation = -2655.148379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.46406 -38.14545 -33.21983 -32.66310 -32.13958 -30.29731 -26.95335 -25.21066 -24.13003 -22.63602 -22.17000 -19.68513 -18.63143 -17.71050 -16.55923 -15.44702 -14.73288 -14.58586 -14.32492 -14.02868 -13.67096 -13.52119 -12.97147 -12.88651 -12.78909 -12.43080 -11.87863 -11.67012 -11.13879 -10.96823 -10.90550 -10.79116 -10.26724 -10.11748 -10.05819 -9.69037 -9.14681 -8.90692 -8.81549 -8.46480 -8.32557 -7.83693 -6.34296 -4.16986 1.04643 1.65644 2.10947 3.23367 3.40394 3.41469 3.60730 4.49828 4.60202 5.02952 5.08986 5.23442 5.41588 5.47628 5.51619 5.60384 5.74339 5.79231 5.91956 6.04945 6.06503 6.22852 6.36136 6.43408 6.59765 6.71718 6.78639 6.88301 7.00709 7.42253 7.98984 8.20349 8.34154 8.71692 8.87359 9.65485 11.04181 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.008356 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.050990 B = 3350.163138 C = 4050.748620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.246 4.246 3 C 0.034 3.966 4 N -0.459 5.459 5 C 0.082 3.918 6 C 0.183 3.817 7 H 0.085 0.915 8 C -0.132 4.132 9 C -0.106 4.106 10 C -0.135 4.135 11 C 0.193 3.807 12 H 0.058 0.942 13 C -0.637 4.637 14 H 0.053 0.947 15 C 0.033 3.967 16 N -0.888 5.888 17 Si 1.058 2.942 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.287 1.287 21 O -0.373 6.373 22 S 0.115 5.885 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.168 0.832 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 0.637 8.569 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.367 4.367 3 C -0.117 4.117 4 N -0.172 5.172 5 C -0.196 4.196 6 C 0.121 3.879 7 H 0.102 0.898 8 C -0.172 4.172 9 C -0.144 4.144 10 C -0.173 4.173 11 C 0.138 3.862 12 H 0.075 0.925 13 C -0.675 4.675 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.522 5.522 17 Si 0.886 3.114 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.213 1.213 21 O -0.292 6.292 22 S 0.370 5.630 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.186 0.814 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.591 -0.944 7.269 11.293 hybrid contribution 0.299 1.799 1.274 2.224 sum -8.292 0.855 8.543 11.936 Atomic orbital electron populations 1.20135 0.87204 1.03054 1.02339 1.25905 1.01230 0.95492 1.14074 1.21734 0.87402 0.99719 1.02887 1.66268 1.16720 1.18896 1.15327 1.27209 1.00634 0.90808 1.00996 1.19970 0.81897 0.96311 0.89672 0.89758 1.22070 0.97089 1.01516 0.96495 1.21435 0.94062 1.01303 0.97606 1.22039 0.99426 0.97932 0.97879 1.19961 0.78762 0.95962 0.91558 0.92450 1.22341 1.43156 0.93480 1.08541 0.92907 1.25751 0.93002 1.05970 0.92873 1.70639 1.37859 1.05484 1.38261 0.83714 0.76498 0.74640 0.76500 1.20690 1.21314 1.21340 1.87970 1.24045 1.58962 1.58215 1.83875 0.98938 1.11566 1.68592 0.91077 0.90600 0.91378 0.81448 0.91736 0.92470 0.93469 0.90971 0.92259 0.93860 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.01 0.38 -0.33 16 2 C -0.25 -3.69 6.60 -35.92 -0.24 -3.93 16 3 C 0.03 0.57 11.25 -19.18 -0.22 0.36 16 4 N -0.46 -9.46 10.53 -11.86 -0.12 -9.58 16 5 C 0.08 1.70 6.28 -13.45 -0.08 1.62 16 6 C 0.18 4.12 2.88 -27.84 -0.08 4.04 16 7 H 0.08 2.04 7.09 -51.93 -0.37 1.67 16 8 C -0.13 -2.55 5.40 -26.59 -0.14 -2.70 16 9 C -0.11 -2.03 5.77 -26.55 -0.15 -2.19 16 10 C -0.13 -2.85 5.59 -26.59 -0.15 -3.00 16 11 C 0.19 4.89 2.76 -27.83 -0.08 4.81 16 12 H 0.06 1.56 8.01 -51.93 -0.42 1.14 16 13 C -0.64 -17.10 6.59 -34.44 -0.23 -17.32 16 14 H 0.05 1.39 6.87 -52.48 -0.36 1.03 16 15 C 0.03 0.93 5.40 -17.82 -0.10 0.83 16 16 N -0.89 -26.68 13.53 55.43 0.75 -25.93 16 17 Si 1.06 24.54 29.90 -169.99 -5.08 19.46 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 21 O -0.37 -9.64 8.89 -35.23 -0.31 -9.95 16 22 S 0.11 1.96 23.18 -107.50 -2.49 -0.53 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.44 6.86 -51.93 -0.36 1.08 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.28 8.77 6.47 -40.82 -0.26 8.50 16 LS Contribution 284.79 15.07 4.29 4.29 Total: -1.00 -30.80 284.79 -8.42 -39.23 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.37 Total: 0.84 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.09 Total: -17.81 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.62 Total: -35.51 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.31 Total: -9.95 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.49 Total: -0.53 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.80 -8.42 -39.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394925625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.422 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds