Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33643 * 126.03398 * 2 1 4 4 N 1.31782 * 114.50051 * 179.79009 * 3 2 1 5 5 C 1.29035 * 117.12220 * 0.46821 * 4 3 2 6 6 C 1.50699 * 124.91289 * 179.81345 * 5 4 3 7 7 H 1.09002 * 109.48570 * 194.66583 * 6 5 4 8 8 C 1.53092 * 109.47986 * 74.64399 * 6 5 4 9 9 C 1.53180 * 109.16202 * 182.40660 * 8 6 5 10 10 C 1.53177 * 109.03819 * 56.98032 * 9 8 6 11 11 C 1.53092 * 109.16050 * 303.01964 * 10 9 8 12 12 H 1.08997 * 109.49360 * 177.59771 * 11 10 9 13 13 C 1.50706 * 109.48170 * 297.62575 * 11 10 9 14 14 H 1.08005 * 119.99758 * 359.94459 * 13 11 10 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 O 1.42900 * 109.48344 * 314.69884 * 6 5 4 22 22 S 1.70974 * 110.16633 * 359.55025 * 5 4 3 23 23 H 1.09001 * 109.46856 * 269.95898 * 1 2 3 24 24 H 1.08997 * 109.47264 * 29.96760 * 1 2 3 25 25 H 1.09004 * 109.46857 * 149.96158 * 1 2 3 26 26 H 1.07997 * 122.75126 * 0.03125 * 3 2 1 27 27 H 1.09010 * 109.51990 * 302.31148 * 8 6 5 28 28 H 1.08998 * 109.52436 * 62.43017 * 8 6 5 29 29 H 1.09001 * 109.53931 * 176.84148 * 9 8 6 30 30 H 1.08997 * 109.54192 * 297.02031 * 9 8 6 31 31 H 1.08993 * 109.52262 * 183.11816 * 10 9 8 32 32 H 1.08998 * 109.52347 * 62.91850 * 10 9 8 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8172 0.0044 5 6 3.9312 -0.4256 -0.0013 6 6 5.3533 -0.9243 -0.0017 7 1 5.3678 -1.9814 -0.2671 8 6 5.9595 -0.7394 1.3919 9 6 7.4225 -1.1925 1.3679 10 6 8.1745 -0.3967 0.2966 11 6 7.4827 -0.5948 -1.0546 12 1 7.9881 0.0030 -1.8130 13 6 7.5414 -2.0504 -1.4407 14 1 8.0245 -2.7630 -0.7885 15 6 6.9790 -2.4722 -2.6267 16 7 6.3918 -1.6043 -3.4214 17 14 7.0524 -4.2763 -3.1056 18 1 6.3802 -4.4685 -4.4157 19 1 8.4708 -4.7037 -3.2091 20 1 6.3640 -5.0911 -2.0723 21 8 6.1180 -0.1830 -0.9545 22 16 2.5437 -1.4247 -0.0009 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3633 -0.8897 -0.5145 26 1 1.9024 2.0875 0.0005 27 1 5.9083 0.3120 1.6748 28 1 5.4035 -1.3381 2.1133 29 1 7.8763 -1.0114 2.3423 30 1 7.4710 -2.2562 1.1351 31 1 9.2033 -0.7514 0.2346 32 1 8.1681 0.6616 0.5574 33 1 6.3540 -0.6675 -3.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394925625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -40.192978 kcal Electronic energy + Delta-G solvation = -16978.661236 eV Core-core repulsion = 14322.672054 eV Total energy + Delta-G solvation = -2655.989183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94978 -39.84620 -35.02932 -34.31927 -33.73784 -31.90387 -28.46555 -26.96372 -25.62522 -24.34912 -23.78631 -21.34944 -20.21625 -19.13777 -18.46112 -17.02715 -16.50446 -16.07698 -15.93299 -15.63613 -15.37454 -15.11807 -14.54279 -14.28432 -13.81045 -13.58016 -13.53774 -13.29361 -12.96769 -12.76247 -12.59062 -12.10380 -11.96666 -11.87880 -11.68973 -11.56987 -10.78011 -10.52574 -10.52319 -10.20624 -9.89378 -9.59856 -8.55313 -6.38004 -0.31727 0.32387 0.75728 1.52187 1.59291 1.78035 1.86066 2.57144 3.08525 3.24073 3.49404 3.98485 4.02277 4.04816 4.12634 4.26784 4.36559 4.43478 4.53113 4.74004 4.77859 4.85116 4.89110 4.99899 5.05752 5.11181 5.20982 5.29711 5.38849 5.48747 5.93497 6.18679 6.58346 6.75419 6.90916 7.53417 8.80527 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.008356 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.050990 B = 3350.163138 C = 4050.748620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.216 4.216 3 C 0.006 3.994 4 N -0.485 5.485 5 C 0.033 3.967 6 C 0.182 3.818 7 H 0.058 0.942 8 C -0.125 4.125 9 C -0.102 4.102 10 C -0.129 4.129 11 C 0.185 3.815 12 H 0.022 0.978 13 C -0.633 4.633 14 H 0.057 0.943 15 C -0.017 4.017 16 N -0.920 5.920 17 Si 1.103 2.897 18 H -0.288 1.288 19 H -0.268 1.268 20 H -0.266 1.266 21 O -0.398 6.398 22 S 0.133 5.867 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.197 0.803 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -0.212 10.230 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.338 4.338 3 C -0.144 4.144 4 N -0.199 5.199 5 C -0.244 4.244 6 C 0.121 3.879 7 H 0.076 0.924 8 C -0.164 4.164 9 C -0.139 4.139 10 C -0.167 4.167 11 C 0.130 3.870 12 H 0.040 0.960 13 C -0.670 4.670 14 H 0.076 0.924 15 C -0.219 4.219 16 N -0.556 5.556 17 Si 0.924 3.076 18 H -0.214 1.214 19 H -0.193 1.193 20 H -0.191 1.191 21 O -0.318 6.318 22 S 0.387 5.613 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.214 0.786 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.139 -1.787 8.960 13.648 hybrid contribution 0.658 2.130 0.784 2.363 sum -9.481 0.343 9.744 13.600 Atomic orbital electron populations 1.20396 0.83461 1.04656 1.04405 1.26554 1.03269 0.93744 1.10188 1.22185 0.86335 1.01627 1.04284 1.66205 1.19154 1.19362 1.15203 1.26906 1.00920 0.91957 1.04589 1.19985 0.83166 0.94412 0.90363 0.92433 1.22017 0.97371 1.01760 0.95240 1.21429 0.93855 1.00132 0.98515 1.21949 0.99600 0.98958 0.96224 1.19903 0.79342 0.94623 0.93156 0.95978 1.22596 1.41908 0.94301 1.08242 0.92437 1.27159 0.92247 1.09259 0.93227 1.70776 1.40711 1.04760 1.39372 0.83154 0.77658 0.70407 0.76344 1.21416 1.19294 1.19123 1.87888 1.24288 1.59654 1.60006 1.83684 0.97717 1.11934 1.67920 0.88564 0.88379 0.90323 0.78602 0.92096 0.89865 0.89787 0.91899 0.91467 0.93171 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.42 71.24 0.74 -0.43 16 2 C -0.22 -5.96 6.60 24.64 0.16 -5.80 16 3 C 0.01 0.19 11.25 83.66 0.94 1.13 16 4 N -0.48 -20.01 10.53 -191.44 -2.02 -22.03 16 5 C 0.03 1.40 6.28 88.52 0.56 1.96 16 6 C 0.18 8.35 2.88 29.88 0.09 8.43 16 7 H 0.06 2.88 7.09 -2.39 -0.02 2.86 16 8 C -0.12 -4.72 5.40 30.69 0.17 -4.56 16 9 C -0.10 -3.74 5.77 30.71 0.18 -3.56 16 10 C -0.13 -5.47 5.59 30.68 0.17 -5.29 16 11 C 0.19 9.75 2.76 29.88 0.08 9.84 16 12 H 0.02 1.29 8.01 -2.39 -0.02 1.27 16 13 C -0.63 -34.62 6.59 25.60 0.17 -34.45 16 14 H 0.06 3.03 6.87 -2.91 -0.02 3.01 16 15 C -0.02 -0.96 5.40 84.65 0.46 -0.50 16 16 N -0.92 -57.46 13.53 21.45 0.29 -57.17 16 17 Si 1.10 49.49 29.90 68.60 2.05 51.54 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 O -0.40 -21.51 8.89 -148.98 -1.32 -22.83 16 22 S 0.13 4.40 23.18 -56.49 -1.31 3.09 16 23 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.20 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.42 6.86 -2.39 -0.02 2.41 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.26 17.27 6.47 -92.71 -0.60 16.67 16 Total: -1.00 -69.63 284.79 2.67 -66.95 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.27 Total: 13.69 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.71 Total: -33.24 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -1.73 Total: -79.20 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.32 Total: -22.83 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.05 Total: 51.54 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.31 Total: 3.09 kcal Total: -69.63 2.67 -66.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394925625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.762 kcal (2) G-P(sol) polarization free energy of solvation -69.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds