Wall clock time and date at job start Mon Mar 30 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46945 * 2 1 4 4 C 1.33637 * 126.03964 * 90.04420 * 3 2 1 5 5 N 1.31788 * 114.50077 * 179.71820 * 4 3 2 6 6 C 1.29032 * 117.12380 * 0.46952 * 5 4 3 7 7 C 1.50692 * 124.91555 * 179.81946 * 6 5 4 8 8 H 1.09001 * 110.33518 * 162.44857 * 7 6 5 9 9 C 1.54481 * 110.37048 * 284.68985 * 7 6 5 10 10 C 1.54517 * 104.06349 * 142.92335 * 9 7 6 11 11 C 1.54479 * 104.06037 * 0.02562 * 10 9 7 12 12 H 1.08997 * 110.37024 * 94.85221 * 11 10 9 13 13 C 1.50690 * 110.37251 * 217.18912 * 11 10 9 14 14 H 1.08001 * 120.00240 * 0.02562 * 13 11 10 15 15 C 1.37886 * 120.00347 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99482 * 0.02562 * 15 13 11 17 17 Si 1.86790 * 120.00415 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46948 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47188 * 120.00109 * 17 15 13 20 20 H 1.48503 * 109.47553 * 240.00291 * 17 15 13 21 21 O 1.44422 * 110.46883 * 40.12885 * 7 6 5 22 22 S 1.70979 * 110.16406 * 359.54902 * 6 5 4 23 23 H 1.09002 * 109.47250 * 300.00202 * 1 2 3 24 24 H 1.09001 * 109.47105 * 60.00107 * 1 2 3 25 25 H 1.08993 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.46960 * 239.99649 * 2 1 3 27 27 H 1.08996 * 109.46719 * 119.99631 * 2 1 3 28 28 H 1.07993 * 122.75407 * 359.95977 * 4 3 2 29 29 H 1.08996 * 110.51163 * 24.28186 * 9 7 6 30 30 H 1.08995 * 110.63589 * 261.62514 * 9 7 6 31 31 H 1.08991 * 110.51174 * 118.64513 * 10 9 7 32 32 H 1.08995 * 110.51247 * 241.35992 * 10 9 7 33 33 H 0.96997 * 119.99753 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2952 2.1618 1.0806 5 7 2.7309 3.3773 0.8170 6 6 2.8414 3.7060 -0.4259 7 6 3.3164 5.0463 -0.9247 8 1 3.6135 4.9774 -1.9711 9 6 2.2089 6.1088 -0.7490 10 6 2.9771 7.3904 -0.3554 11 6 4.4579 6.9507 -0.3404 12 1 4.9296 7.1740 -1.2973 13 6 5.1964 7.6331 0.7819 14 1 4.6748 8.3186 1.4334 15 6 6.5379 7.3816 0.9778 16 7 7.1730 6.5464 0.1848 17 14 7.4536 8.2280 2.3685 18 1 6.5194 9.1132 3.1097 19 1 8.0042 7.2050 3.2935 20 1 8.5648 9.0385 1.8086 21 8 4.4167 5.5236 -0.1200 22 16 2.3779 2.3981 -1.4248 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1651 1.7935 2.0874 29 1 1.5217 5.8164 0.0449 30 1 1.6691 6.2591 -1.6839 31 1 2.8190 8.1733 -1.0970 32 1 2.6696 7.7315 0.6331 33 1 8.1167 6.3697 0.3223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394941911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:01 Heat of formation + Delta-G solvation = -12.132734 kcal Electronic energy + Delta-G solvation = -16276.154807 eV Core-core repulsion = 13621.382408 eV Total energy + Delta-G solvation = -2654.772399 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53208 -37.88712 -34.33805 -32.63422 -30.93153 -30.05104 -27.77225 -25.72259 -23.84880 -22.70273 -21.47466 -20.05784 -18.68820 -17.89197 -16.64210 -15.35840 -15.19181 -14.59603 -14.35010 -14.20859 -13.92687 -13.79710 -13.41879 -12.69636 -12.45612 -12.25694 -11.71796 -11.69352 -11.62692 -10.97588 -10.88623 -10.82575 -10.58089 -10.37852 -10.04128 -9.77617 -9.23209 -9.05140 -8.96212 -8.61605 -8.46212 -8.11855 -6.01485 -4.12947 0.97213 1.56575 2.00270 3.19420 3.32602 3.40311 3.44198 4.44147 4.49520 4.80336 4.90881 5.02461 5.14159 5.37614 5.47523 5.50300 5.57244 5.62500 5.68724 5.72495 5.96086 6.01721 6.10151 6.22460 6.29886 6.55303 6.63707 6.75562 6.80585 7.47757 7.89809 8.15663 8.20959 8.50794 8.96884 9.57265 11.06863 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.034532 B = 0.005354 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.642814 B = 5228.283546 C = 5562.171655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.236 4.236 4 C 0.040 3.960 5 N -0.448 5.448 6 C 0.083 3.917 7 C 0.136 3.864 8 H 0.070 0.930 9 C -0.138 4.138 10 C -0.143 4.143 11 C 0.202 3.798 12 H 0.031 0.969 13 C -0.524 4.524 14 H 0.066 0.934 15 C 0.076 3.924 16 N -0.865 5.865 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 O -0.329 6.329 22 S 0.095 5.905 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.170 0.830 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.032 -10.420 -3.639 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.357 4.357 4 C -0.111 4.111 5 N -0.161 5.161 6 C -0.196 4.196 7 C 0.073 3.927 8 H 0.088 0.912 9 C -0.177 4.177 10 C -0.181 4.181 11 C 0.147 3.853 12 H 0.048 0.952 13 C -0.562 4.562 14 H 0.084 0.916 15 C -0.130 4.130 16 N -0.501 5.501 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.209 1.209 21 O -0.248 6.248 22 S 0.351 5.649 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.187 0.813 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.609 -10.376 -4.221 16.132 hybrid contribution 0.379 0.093 1.517 1.567 sum -11.230 -10.283 -2.703 15.465 Atomic orbital electron populations 1.21801 0.94528 1.01721 1.02475 1.19912 0.95869 0.89139 1.03135 1.25880 1.12496 1.02243 0.95094 1.21790 1.00446 0.89068 0.99831 1.66242 1.14402 1.16714 1.18739 1.27164 1.01310 1.00247 0.90861 1.21279 0.90383 0.86201 0.94833 0.91203 1.22913 0.97770 0.96073 1.00989 1.23034 0.98563 0.95531 1.01021 1.20638 0.89408 0.77777 0.97466 0.95166 1.21067 0.93778 1.25310 1.16006 0.91622 1.25102 0.97696 0.94268 0.95893 1.70034 1.09780 1.33263 1.37018 0.86511 0.79688 0.79359 0.82269 1.19532 1.20829 1.20874 1.89677 1.45615 1.24648 1.64813 1.83715 1.61710 1.07262 1.12195 0.92309 0.92546 0.92168 0.90879 0.89982 0.81346 0.91436 0.91764 0.92357 0.91410 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 37.16 0.37 -0.89 16 2 C -0.04 -0.40 6.47 -27.88 -0.18 -0.58 16 3 C -0.24 -3.28 5.85 -35.92 -0.21 -3.49 16 4 C 0.04 0.65 11.25 -19.18 -0.22 0.44 16 5 N -0.45 -9.20 10.50 -11.87 -0.12 -9.32 16 6 C 0.08 1.62 6.25 -13.46 -0.08 1.54 16 7 C 0.14 2.88 3.80 -27.11 -0.10 2.77 16 8 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 9 C -0.14 -2.59 6.62 -25.16 -0.17 -2.76 16 10 C -0.14 -3.05 6.62 -25.16 -0.17 -3.21 16 11 C 0.20 5.33 3.06 -27.11 -0.08 5.25 16 12 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.52 -15.07 8.77 -34.44 -0.30 -15.37 16 14 H 0.07 1.83 7.57 -52.49 -0.40 1.43 16 15 C 0.08 2.21 5.43 -17.81 -0.10 2.11 16 16 N -0.86 -26.22 13.07 55.43 0.72 -25.50 16 17 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 O -0.33 -8.94 10.70 -35.23 -0.38 -9.32 16 22 S 0.10 1.43 23.18 -107.50 -2.49 -1.06 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.17 2.28 8.06 -52.49 -0.42 1.85 16 29 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.46 7.71 -51.93 -0.40 1.06 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 295.11 15.07 4.45 4.45 Total: -1.00 -32.76 295.11 -8.65 -41.41 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.57 Total: -3.32 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.24 Total: -14.19 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.60 Total: -34.82 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.38 Total: -9.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.76 -8.65 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394941911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.276 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds