Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.55450 * 2 1 4 4 C 1.55000 * 110.61820 * 237.12055 * 2 1 3 5 5 C 1.54813 * 102.09130 * 204.47357 * 4 2 1 6 6 C 1.54096 * 104.18916 * 20.88042 * 5 4 2 7 7 H 1.09000 * 109.88249 * 242.45309 * 6 5 4 8 8 C 1.50699 * 109.87816 * 121.45120 * 6 5 4 9 9 N 1.29027 * 124.91378 * 105.30736 * 8 6 5 10 10 C 1.31788 * 117.12109 * 179.97438 * 9 8 6 11 11 C 1.50706 * 122.74497 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46931 * 265.00110 * 11 10 9 13 13 H 1.07998 * 120.00545 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99709 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00183 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47062 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47021 * 119.99622 * 16 14 12 19 19 H 1.48499 * 109.47286 * 240.00152 * 16 14 12 20 20 C 1.33635 * 114.50125 * 0.23259 * 10 9 8 21 21 S 1.70976 * 124.91910 * 285.30371 * 8 6 5 22 22 O 1.43750 * 107.42238 * 1.95279 * 6 5 4 23 23 H 1.09002 * 109.47122 * 182.88375 * 1 2 3 24 24 H 1.09004 * 109.46837 * 302.87839 * 1 2 3 25 25 H 1.08998 * 109.47081 * 62.87949 * 1 2 3 26 26 H 1.08999 * 110.90232 * 86.27473 * 4 2 1 27 27 H 1.08994 * 110.90803 * 322.67138 * 4 2 1 28 28 H 1.08996 * 110.48736 * 262.20500 * 5 4 2 29 29 H 1.09004 * 110.59634 * 139.61314 * 5 4 2 30 30 H 1.08998 * 109.47087 * 25.00429 * 11 10 9 31 31 H 1.09005 * 109.46702 * 145.00286 * 11 10 9 32 32 H 0.96996 * 120.00425 * 180.02562 * 15 14 12 33 33 H 1.08001 * 126.03202 * 179.76469 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4795 -1.2156 -0.7253 6 6 3.3840 -1.1266 0.8101 7 1 4.0873 -0.3819 1.1827 8 6 3.6889 -2.4699 1.4212 9 7 4.7887 -2.7750 2.0229 10 6 4.8922 -3.9984 2.5018 11 6 6.1194 -4.4893 3.2258 12 6 7.0264 -5.1982 2.2533 13 1 6.7425 -5.2849 1.2149 14 6 8.2184 -5.7369 2.6894 15 7 8.5639 -5.6317 3.9539 16 14 9.3424 -6.6162 1.4841 17 1 8.7288 -6.5985 0.1318 18 1 10.6572 -5.9272 1.4405 19 1 9.5344 -8.0222 1.9216 20 6 3.8219 -4.7696 2.2881 21 16 2.6275 -3.8104 1.4176 22 8 2.0397 -0.7353 1.1357 23 1 -0.3633 -1.0264 0.0517 24 1 -0.3633 0.5579 0.8631 25 1 -0.3633 0.4685 -0.9147 26 1 2.1508 -0.1445 -2.0952 27 1 1.4550 -1.6585 -1.4283 28 1 4.2406 -0.5315 -1.1005 29 1 3.6998 -2.2372 -1.0353 30 1 6.6469 -3.6415 3.6629 31 1 5.8233 -5.1796 4.0158 32 1 9.4026 -6.0104 4.2607 33 1 3.7087 -5.7986 2.5958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398281955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -14.422386 kcal Electronic energy + Delta-G solvation = -16096.280309 eV Core-core repulsion = 13441.408623 eV Total energy + Delta-G solvation = -2654.871686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88369 -38.81675 -33.40914 -32.50340 -32.20516 -30.28998 -27.57862 -26.52097 -24.02827 -22.72284 -21.47764 -20.89903 -19.07341 -17.22931 -16.64337 -16.33275 -15.51114 -15.27214 -14.60251 -14.14219 -13.82380 -13.75940 -13.00410 -12.65087 -12.50310 -12.32998 -12.17238 -11.82251 -11.66097 -11.30177 -11.09258 -11.03915 -10.85132 -10.70956 -10.46537 -9.96355 -9.68569 -9.44378 -8.99132 -8.77279 -8.42926 -7.90174 -6.04839 -4.07875 1.31852 1.97442 2.40161 3.29678 3.36070 3.40104 3.45316 3.77858 4.36151 4.44074 4.45230 4.68274 4.77840 5.02026 5.19691 5.25782 5.30978 5.39625 5.59644 5.61093 5.73923 5.78404 5.87159 5.96144 5.97896 6.06090 6.35839 6.77551 7.04538 7.48636 7.56561 7.90670 8.28571 8.55058 8.94937 9.54969 11.05644 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.004856 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.145732 B = 5764.681249 C = 5982.840402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.073 0.927 4 C -0.150 4.150 5 C -0.146 4.146 6 C 0.160 3.840 7 H 0.097 0.903 8 C 0.033 3.967 9 N -0.452 5.452 10 C 0.110 3.890 11 C 0.084 3.916 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.264 4.264 21 S 0.082 5.918 22 O -0.363 6.363 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 9.338 -9.469 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.091 0.909 4 C -0.188 4.188 5 C -0.185 4.185 6 C 0.099 3.901 7 H 0.115 0.885 8 C -0.245 4.245 9 N -0.168 5.168 10 C -0.020 4.020 11 C 0.044 3.956 12 C -0.548 4.548 13 H 0.074 0.926 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.401 4.401 21 S 0.335 5.665 22 O -0.282 6.282 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.546 9.462 -9.480 20.520 hybrid contribution 1.634 -0.855 -0.292 1.867 sum -13.912 8.607 -9.772 19.055 Atomic orbital electron populations 1.21771 0.93016 1.03185 1.02332 1.23200 0.95290 0.95402 0.84918 0.90902 1.23203 0.96165 1.00928 0.98455 1.23010 0.97968 1.03920 0.93626 1.20902 0.85500 0.90213 0.93492 0.88485 1.26634 0.94093 0.99697 1.04094 1.66107 1.21084 1.19652 1.09964 1.21202 0.97578 0.86293 0.96897 1.18009 0.86618 0.96517 0.94438 1.21017 1.03519 1.35202 0.95020 0.92595 1.24977 0.97701 0.96260 0.95299 1.69959 1.23280 1.45609 1.14371 0.86449 0.80580 0.79260 0.81231 1.19762 1.20860 1.20893 1.26820 0.97066 1.05368 1.10875 1.83464 1.22099 1.06012 1.54955 1.89000 1.27144 1.73338 1.38673 0.91589 0.91805 0.91111 0.89932 0.90180 0.89629 0.89841 0.94284 0.94411 0.92814 0.80987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.66 37.16 0.36 -0.83 16 2 C 0.07 0.69 3.97 -25.68 -0.10 0.59 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.38 6.59 -24.72 -0.16 -1.54 16 5 C -0.15 -1.73 6.63 -25.20 -0.17 -1.89 16 6 C 0.16 2.38 3.94 -27.31 -0.11 2.28 16 7 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 8 C 0.03 0.62 6.14 -13.46 -0.08 0.54 16 9 N -0.45 -10.19 10.53 -8.05 -0.08 -10.28 16 10 C 0.11 2.60 5.93 -84.22 -0.50 2.10 16 11 C 0.08 2.27 5.39 -29.03 -0.16 2.11 16 12 C -0.51 -14.64 9.09 -34.44 -0.31 -14.96 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.26 -5.37 11.14 29.12 0.32 -5.05 16 21 S 0.08 1.40 23.00 -107.50 -2.47 -1.07 16 22 O -0.36 -5.12 10.73 -35.23 -0.38 -5.50 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 30 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.17 3.21 8.06 -52.49 -0.42 2.79 16 LS Contribution 295.48 15.07 4.45 4.45 Total: -1.00 -31.71 295.48 -8.36 -40.07 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -4.59 Total: -3.47 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.01 Total: -15.05 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.65 Total: -36.21 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.71 -8.36 -40.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398281955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.645 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds