Wall clock time and date at job start Mon Mar 30 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.55450 * 2 1 4 4 C 1.55000 * 110.61820 * 237.12055 * 2 1 3 5 5 C 1.54813 * 102.09130 * 204.47357 * 4 2 1 6 6 C 1.54096 * 104.18916 * 20.88042 * 5 4 2 7 7 H 1.09000 * 109.88249 * 242.45309 * 6 5 4 8 8 C 1.50699 * 109.87816 * 121.45120 * 6 5 4 9 9 N 1.29027 * 124.91378 * 105.30736 * 8 6 5 10 10 C 1.31788 * 117.12109 * 179.97438 * 9 8 6 11 11 C 1.50706 * 122.74497 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.46931 * 265.00110 * 11 10 9 13 13 H 1.07998 * 120.00545 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99709 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00183 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47062 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47021 * 119.99622 * 16 14 12 19 19 H 1.48499 * 109.47286 * 240.00152 * 16 14 12 20 20 C 1.33635 * 114.50125 * 0.23259 * 10 9 8 21 21 S 1.70976 * 124.91910 * 285.30371 * 8 6 5 22 22 O 1.43750 * 107.42238 * 1.95279 * 6 5 4 23 23 H 1.09002 * 109.47122 * 182.88375 * 1 2 3 24 24 H 1.09004 * 109.46837 * 302.87839 * 1 2 3 25 25 H 1.08998 * 109.47081 * 62.87949 * 1 2 3 26 26 H 1.08999 * 110.90232 * 86.27473 * 4 2 1 27 27 H 1.08994 * 110.90803 * 322.67138 * 4 2 1 28 28 H 1.08996 * 110.48736 * 262.20500 * 5 4 2 29 29 H 1.09004 * 110.59634 * 139.61314 * 5 4 2 30 30 H 1.08998 * 109.47087 * 25.00429 * 11 10 9 31 31 H 1.09005 * 109.46702 * 145.00286 * 11 10 9 32 32 H 0.96996 * 120.00425 * 180.02562 * 15 14 12 33 33 H 1.08001 * 126.03202 * 179.76469 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4795 -1.2156 -0.7253 6 6 3.3840 -1.1266 0.8101 7 1 4.0873 -0.3819 1.1827 8 6 3.6889 -2.4699 1.4212 9 7 4.7887 -2.7750 2.0229 10 6 4.8922 -3.9984 2.5018 11 6 6.1194 -4.4893 3.2258 12 6 7.0264 -5.1982 2.2533 13 1 6.7425 -5.2849 1.2149 14 6 8.2184 -5.7369 2.6894 15 7 8.5639 -5.6317 3.9539 16 14 9.3424 -6.6162 1.4841 17 1 8.7288 -6.5985 0.1318 18 1 10.6572 -5.9272 1.4405 19 1 9.5344 -8.0222 1.9216 20 6 3.8219 -4.7696 2.2881 21 16 2.6275 -3.8104 1.4176 22 8 2.0397 -0.7353 1.1357 23 1 -0.3633 -1.0264 0.0517 24 1 -0.3633 0.5579 0.8631 25 1 -0.3633 0.4685 -0.9147 26 1 2.1508 -0.1445 -2.0952 27 1 1.4550 -1.6585 -1.4283 28 1 4.2406 -0.5315 -1.1005 29 1 3.6998 -2.2372 -1.0353 30 1 6.6469 -3.6415 3.6629 31 1 5.8233 -5.1796 4.0158 32 1 9.4026 -6.0104 4.2607 33 1 3.7087 -5.7986 2.5958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398281955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:58 Heat of formation + Delta-G solvation = -34.905317 kcal Electronic energy + Delta-G solvation = -16097.168515 eV Core-core repulsion = 13441.408623 eV Total energy + Delta-G solvation = -2655.759892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11384 -40.18632 -35.43603 -33.62967 -33.30880 -31.79404 -29.37179 -27.71492 -25.84331 -24.11676 -22.39852 -22.04589 -20.64906 -18.70762 -18.54386 -17.61287 -16.83556 -16.54738 -16.33250 -15.47519 -15.16759 -14.81091 -14.38578 -14.21361 -13.92885 -13.67866 -13.30019 -13.20589 -12.95196 -12.69443 -12.64860 -12.43826 -12.31600 -11.78925 -11.74535 -11.67753 -11.57530 -10.88761 -10.65039 -10.51723 -10.30823 -9.51831 -8.24168 -6.37332 -0.21204 0.49302 0.82849 1.37938 1.39144 1.52312 1.89036 2.39310 2.57322 3.07390 3.28488 3.52043 3.84243 3.89365 4.13157 4.27782 4.35925 4.43108 4.49310 4.62972 4.66999 4.82130 4.91783 5.02126 5.04154 5.13386 5.19858 5.32482 5.33672 5.41732 5.67614 5.87315 6.09452 6.71494 6.93196 7.30574 8.86626 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039925 B = 0.004856 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.145732 B = 5764.681249 C = 5982.840402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 H 0.087 0.913 4 C -0.140 4.140 5 C -0.145 4.145 6 C 0.157 3.843 7 H 0.092 0.908 8 C 0.028 3.972 9 N -0.496 5.496 10 C 0.078 3.922 11 C 0.093 3.907 12 C -0.528 4.528 13 H 0.051 0.949 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.271 1.271 20 C -0.275 4.275 21 S 0.172 5.828 22 O -0.383 6.383 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.003 0.997 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 9.684 -11.990 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.003 3.997 3 H 0.105 0.895 4 C -0.177 4.177 5 C -0.184 4.184 6 C 0.096 3.904 7 H 0.109 0.891 8 C -0.250 4.250 9 N -0.213 5.213 10 C -0.052 4.052 11 C 0.053 3.947 12 C -0.566 4.566 13 H 0.069 0.931 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.795 3.205 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.196 1.196 20 C -0.413 4.413 21 S 0.426 5.574 22 O -0.303 6.303 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.021 0.979 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.047 9.818 -12.007 23.047 hybrid contribution 1.950 -0.880 0.491 2.194 sum -15.097 8.938 -11.516 20.987 Atomic orbital electron populations 1.21802 0.91542 1.03026 1.03669 1.23551 0.96442 0.95779 0.83879 0.89465 1.23218 0.94010 1.01420 0.99051 1.23035 1.00416 1.03728 0.91204 1.21018 0.86120 0.88024 0.95263 0.89071 1.27372 0.93451 1.01878 1.02330 1.66025 1.23523 1.19607 1.12121 1.20723 0.97548 0.87843 0.99066 1.17658 0.88133 0.94674 0.94187 1.21258 1.04489 1.35879 0.94991 0.93101 1.25923 0.99200 0.96815 0.97226 1.70079 1.24010 1.46360 1.16343 0.85314 0.78180 0.78269 0.78758 1.19100 1.20133 1.19613 1.27018 0.97602 1.06130 1.10593 1.83057 1.18902 1.03124 1.52360 1.88977 1.26464 1.73955 1.40909 0.92305 0.92061 0.88403 0.86878 0.89980 0.87978 0.91183 0.97894 0.96095 0.92346 0.79875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.66 71.98 0.70 -1.19 16 2 C 0.06 1.02 3.97 31.28 0.12 1.15 16 3 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 4 C -0.14 -2.07 6.59 31.90 0.21 -1.86 16 5 C -0.14 -3.11 6.63 31.58 0.21 -2.90 16 6 C 0.16 4.52 3.94 30.22 0.12 4.64 16 7 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 8 C 0.03 1.02 6.14 88.52 0.54 1.56 16 9 N -0.50 -23.03 10.53 -179.40 -1.89 -24.92 16 10 C 0.08 3.84 5.93 41.52 0.25 4.09 16 11 C 0.09 5.33 5.39 29.10 0.16 5.49 16 12 C -0.53 -31.40 9.09 25.60 0.23 -31.16 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 16 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C -0.28 -11.27 11.14 66.77 0.74 -10.53 16 21 S 0.17 5.61 23.00 -56.49 -1.30 4.31 16 22 O -0.38 -10.18 10.73 -148.98 -1.60 -11.77 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.70 7.69 -2.39 -0.02 1.68 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.18 6.85 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -70.80 295.48 2.36 -68.44 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.09 Total: 3.35 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.74 Total: -29.86 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.60 Total: -81.54 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -1.60 Total: -11.77 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.30 Total: 4.31 kcal Total: -70.80 2.36 -68.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398281955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.532 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds