Wall clock time and date at job start Mon Mar 30 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46965 * 2 1 4 4 C 1.50698 * 109.47762 * 120.00452 * 2 1 3 5 5 H 1.07992 * 120.00526 * 119.99572 * 4 2 1 6 6 C 1.37883 * 119.99726 * 300.00712 * 4 2 1 7 7 N 1.31510 * 120.00003 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46595 * 90.00471 * 8 6 4 10 10 H 1.48501 * 109.47005 * 210.00465 * 8 6 4 11 11 H 1.48499 * 109.47087 * 330.00382 * 8 6 4 12 12 C 1.50700 * 109.47269 * 240.00650 * 2 1 3 13 13 O 1.21296 * 120.00081 * 239.99828 * 12 2 1 14 14 N 1.34780 * 120.00244 * 59.99689 * 12 2 1 15 15 C 1.40118 * 120.00374 * 175.55300 * 14 12 2 16 16 C 1.38726 * 120.07300 * 34.64332 * 15 14 12 17 17 C 1.38375 * 119.95650 * 179.79677 * 16 15 14 18 18 F 1.35097 * 119.94433 * 180.25396 * 17 16 15 19 19 C 1.38482 * 120.11611 * 0.47834 * 17 16 15 20 20 C 1.38241 * 120.14995 * 359.75279 * 19 17 16 21 21 C 1.38532 * 120.04292 * 0.02562 * 20 19 17 22 22 O 1.36021 * 120.05991 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.47390 * 299.99139 * 1 2 3 24 24 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47074 * 59.99878 * 1 2 3 26 26 H 0.97005 * 120.00013 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99784 * 355.55169 * 14 12 2 28 28 H 1.07995 * 120.02216 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.92150 * 179.72415 * 19 17 16 30 30 H 1.08001 * 119.98274 * 179.97438 * 20 19 17 31 31 H 0.96698 * 113.99673 * 270.02266 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6257 1.2795 2.6542 9 1 -0.8021 0.8739 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8488 2.1771 1.4924 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7067 -0.2497 -2.4546 15 6 2.2487 -0.8531 -3.5973 16 6 2.4860 -2.2198 -3.6155 17 6 3.0174 -2.8138 -4.7467 18 9 3.2435 -4.1455 -4.7661 19 6 3.3221 -2.0447 -5.8574 20 6 3.0920 -0.6817 -5.8425 21 6 2.5560 -0.0811 -4.7150 22 8 2.3300 1.2601 -4.6998 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.9041 -0.5277 4.4375 27 1 1.0972 0.4994 -2.5446 28 1 2.2527 -2.8203 -2.7488 29 1 3.7409 -2.5109 -6.7369 30 1 3.3311 -0.0845 -6.7100 31 1 3.0788 1.7815 -4.3799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597440753.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:26 Heat of formation + Delta-G solvation = -118.724396 kcal Electronic energy + Delta-G solvation = -18296.071405 eV Core-core repulsion = 15070.463668 eV Total energy + Delta-G solvation = -3225.607736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.95018 -41.74850 -39.96301 -37.40913 -35.90090 -35.74604 -33.41115 -31.19452 -29.85741 -27.16524 -25.54136 -24.03678 -23.18153 -21.20949 -19.63184 -19.14616 -18.83059 -18.00336 -17.39969 -17.12961 -16.64422 -16.43741 -16.25797 -15.96500 -15.25741 -14.91679 -14.70087 -14.62961 -14.10774 -13.83965 -13.54242 -13.15818 -12.91551 -12.85945 -12.58322 -12.19277 -11.88751 -11.49598 -11.36793 -11.27565 -10.80085 -10.54552 -9.78724 -9.16741 -8.29269 -6.38589 -0.05142 0.10271 1.33630 1.39862 1.51262 1.64335 2.00871 2.33045 2.43414 3.04232 3.14948 3.25817 3.73507 3.95347 4.02286 4.26326 4.35231 4.44605 4.53774 4.69550 4.88069 4.93883 5.00025 5.10137 5.15989 5.37079 5.39865 5.47519 5.77483 6.19087 6.48717 6.75886 6.76749 7.17670 7.29806 8.88245 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.005814 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.135813 B = 4815.127579 C = 5447.345678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.079 0.921 4 C -0.526 4.526 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.959 3.041 9 H -0.261 1.261 10 H -0.300 1.300 11 H -0.226 1.226 12 C 0.527 3.473 13 O -0.557 6.557 14 N -0.660 5.660 15 C 0.139 3.861 16 C -0.176 4.176 17 C 0.089 3.911 18 F -0.148 7.148 19 C -0.144 4.144 20 C -0.084 4.084 21 C 0.077 3.923 22 O -0.490 6.490 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.268 0.732 27 H 0.429 0.571 28 H 0.118 0.882 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 7.337 -21.264 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.097 0.903 4 C -0.564 4.564 5 H 0.048 0.952 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.784 3.216 9 H -0.187 1.187 10 H -0.228 1.228 11 H -0.149 1.149 12 C 0.318 3.682 13 O -0.433 6.433 14 N -0.308 5.308 15 C 0.043 3.957 16 C -0.197 4.197 17 C 0.070 3.930 18 F -0.127 7.127 19 C -0.163 4.163 20 C -0.103 4.103 21 C 0.029 3.971 22 O -0.303 6.303 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.269 0.731 28 H 0.136 0.864 29 H 0.189 0.811 30 H 0.200 0.800 31 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -1.866 6.467 -21.138 22.183 hybrid contribution 0.055 0.000 1.347 1.348 sum -1.810 6.467 -19.790 20.899 Atomic orbital electron populations 1.22071 0.94257 1.01859 1.01933 1.19271 0.95500 0.97754 0.89908 0.90335 1.21060 1.31997 1.13035 0.90296 0.95167 1.26043 0.97368 1.00769 0.94737 1.70075 1.47436 1.42796 0.98804 0.85716 0.78684 0.78947 0.78289 1.18697 1.22768 1.14865 1.21439 0.78229 0.83710 0.84871 1.90601 1.38590 1.27290 1.86791 1.43531 1.47907 1.36352 1.03002 1.18125 0.98877 0.91053 0.87664 1.21123 1.04915 0.94932 0.98753 1.17741 1.01998 0.77664 0.95635 1.91468 1.92640 1.31551 1.97002 1.21308 1.03083 0.94052 0.97901 1.21427 0.96335 0.94078 0.98427 1.18204 1.01594 0.84552 0.92701 1.84789 1.44546 1.12893 1.88065 0.93154 0.93491 0.89448 0.92317 0.73130 0.86364 0.81104 0.80040 0.73112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.57 71.98 0.62 -4.66 16 2 C 0.00 -0.12 2.24 -12.29 -0.03 -0.15 16 3 H 0.08 3.13 7.20 -2.39 -0.02 3.12 16 4 C -0.53 -30.82 8.96 25.60 0.23 -30.59 16 5 H 0.03 2.10 7.00 -2.91 -0.02 2.08 16 6 C 0.01 0.44 5.45 84.66 0.46 0.90 16 7 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 8 Si 0.96 41.86 24.37 68.60 1.67 43.53 16 9 H -0.26 -10.71 6.87 99.48 0.68 -10.02 16 10 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.23 -8.32 6.53 99.48 0.65 -7.67 16 12 C 0.53 22.40 7.00 87.66 0.61 23.01 16 13 O -0.56 -29.13 12.88 -3.08 -0.04 -29.17 16 14 N -0.66 -20.50 5.11 -303.14 -1.55 -22.05 16 15 C 0.14 4.14 6.32 38.18 0.24 4.38 16 16 C -0.18 -6.03 8.68 22.42 0.19 -5.84 16 17 C 0.09 2.56 7.29 22.36 0.16 2.72 16 18 F -0.15 -4.56 17.26 44.97 0.78 -3.78 16 19 C -0.14 -2.80 10.02 22.33 0.22 -2.58 16 20 C -0.08 -1.39 9.98 22.34 0.22 -1.17 16 21 C 0.08 1.65 6.72 22.59 0.15 1.80 16 22 O -0.49 -8.04 13.07 -93.78 -1.23 -9.27 16 23 H 0.05 1.88 3.27 -2.39 -0.01 1.87 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.09 2.29 7.47 -2.39 -0.02 2.27 16 26 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 27 H 0.43 10.23 7.87 -92.71 -0.73 9.50 16 28 H 0.12 4.99 6.20 -2.91 -0.02 4.97 16 29 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.41 3.56 9.06 -74.06 -0.67 2.89 16 Total: -1.00 -78.97 269.00 2.75 -76.23 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.28 Total: 16.93 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.09 Total: -12.18 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.25 Total: -82.29 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.26 Total: -38.44 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.67 Total: 43.53 kcal Total: -78.97 2.75 -76.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597440753.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.499 kcal (2) G-P(sol) polarization free energy of solvation -78.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds