Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47150 * 2 1 4 4 C 1.50700 * 109.47179 * 119.99836 * 2 1 3 5 5 H 1.08000 * 120.00286 * 120.00289 * 4 2 1 6 6 C 1.37879 * 120.00047 * 299.99769 * 4 2 1 7 7 N 1.31517 * 119.99869 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00056 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47372 * 60.00419 * 8 6 4 10 10 H 1.48504 * 109.47215 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47370 * 300.00355 * 8 6 4 12 12 C 1.50700 * 109.47268 * 239.99892 * 2 1 3 13 13 O 1.21297 * 119.99968 * 240.00062 * 12 2 1 14 14 N 1.34779 * 120.00125 * 59.99679 * 12 2 1 15 15 C 1.40249 * 120.00020 * 185.04539 * 14 12 2 16 16 C 1.39251 * 120.09626 * 90.42847 * 15 14 12 17 17 O 1.35980 * 120.06691 * 0.04786 * 16 15 14 18 18 C 1.38567 * 119.86204 * 180.29714 * 16 15 14 19 19 C 1.38263 * 120.05064 * 359.72915 * 18 16 15 20 20 C 1.38236 * 120.19842 * 0.02562 * 19 18 16 21 21 C 1.38418 * 120.13697 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.02874 * 179.97438 * 21 20 19 23 23 H 1.09005 * 109.46694 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47009 * 300.00208 * 1 2 3 25 25 H 1.08998 * 109.47086 * 60.00198 * 1 2 3 26 26 H 0.97006 * 119.99897 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99445 * 5.04872 * 14 12 2 28 28 H 0.96696 * 113.99576 * 270.25018 * 17 16 15 29 29 H 1.07997 * 119.97067 * 179.74266 * 18 16 15 30 30 H 1.08003 * 119.89850 * 179.97438 * 19 18 16 31 31 H 1.08000 * 119.93063 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8075 -1.1187 4.0078 10 1 1.8270 -0.4197 5.2205 11 1 1.8282 -2.5197 4.0083 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.0846 -0.9694 -3.5977 16 6 1.2334 -1.9357 -4.1277 17 8 0.0332 -2.1834 -3.5385 18 6 1.6143 -2.6479 -5.2537 19 6 2.8346 -2.3954 -5.8527 20 6 3.6791 -1.4331 -5.3315 21 6 3.3067 -0.7169 -4.2070 22 9 4.1341 0.2227 -3.6991 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7082 1.1610 3.4844 27 1 1.2111 0.5789 -2.5449 28 1 0.0645 -2.8656 -2.8539 29 1 0.9573 -3.4006 -5.6637 30 1 3.1292 -2.9522 -6.7300 31 1 4.6315 -1.2397 -5.8026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597442400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -99.936710 kcal Electronic energy + Delta-G solvation = -18559.226486 eV Core-core repulsion = 15334.433445 eV Total energy + Delta-G solvation = -3224.793041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.75332 -40.09607 -38.35040 -36.48510 -34.15500 -33.77111 -30.71212 -29.81227 -28.77375 -25.15043 -23.56869 -22.68492 -21.82166 -19.64177 -18.58577 -17.48032 -16.85105 -16.31862 -16.10058 -15.88438 -15.29641 -14.84045 -14.49443 -14.42321 -13.97554 -13.65670 -13.05679 -12.52996 -12.32363 -11.96699 -11.78295 -11.55216 -11.02309 -10.91055 -10.76390 -10.70438 -10.28779 -9.99462 -9.05504 -8.95595 -8.83000 -8.67884 -8.60376 -8.34860 -6.04705 -4.08523 1.02718 1.06788 3.34224 3.35390 3.38012 3.43002 3.55044 3.68981 4.00990 4.45123 4.47363 4.78042 5.01789 5.15568 5.28545 5.44432 5.78197 5.97407 6.11730 6.12813 6.19992 6.57509 6.62423 6.82105 6.89217 7.10492 7.43979 7.64498 7.73059 7.92227 8.07632 8.34250 8.99290 9.10260 9.56917 11.02790 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.005897 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.362686 B = 4746.887570 C = 4984.476318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.033 3.967 3 H 0.054 0.946 4 C -0.504 4.504 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.536 6.536 14 N -0.696 5.696 15 C 0.090 3.910 16 C 0.140 3.860 17 O -0.488 6.488 18 C -0.155 4.155 19 C -0.079 4.079 20 C -0.163 4.163 21 C 0.119 3.881 22 F -0.128 7.128 23 H 0.031 0.969 24 H 0.094 0.906 25 H 0.014 0.986 26 H 0.262 0.738 27 H 0.408 0.592 28 H 0.398 0.602 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -3.615 -15.729 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.542 4.542 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.411 6.411 14 N -0.350 5.350 15 C -0.003 4.003 16 C 0.093 3.907 17 O -0.299 6.299 18 C -0.174 4.174 19 C -0.097 4.097 20 C -0.182 4.182 21 C 0.098 3.902 22 F -0.107 7.107 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.256 0.744 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.318 -3.755 -15.785 16.229 hybrid contribution 0.363 -0.174 1.179 1.246 sum 0.681 -3.929 -14.606 15.141 Atomic orbital electron populations 1.21732 0.96104 0.99920 1.01124 1.18880 0.94367 0.96922 0.88643 0.92791 1.21076 1.31262 1.12932 0.88929 0.90863 1.24945 0.95050 0.95051 0.99101 1.69864 1.36873 1.22992 1.23721 0.86489 0.79300 0.79664 0.81577 1.20185 1.21317 1.20201 1.22294 0.77739 0.84399 0.83856 1.90553 1.36865 1.27263 1.86371 1.43811 1.60567 1.27242 1.03409 1.18068 0.92759 0.98520 0.91002 1.18516 0.85209 0.93951 0.93030 1.84741 1.26140 1.62550 1.56453 1.21383 0.97458 1.01215 0.97334 1.20834 0.92982 0.96493 0.99411 1.21084 1.01972 0.98558 0.96602 1.17954 0.88405 0.89816 0.94029 1.91521 1.70436 1.62119 1.86597 0.94953 0.88768 0.96662 0.92836 0.75433 0.74438 0.84602 0.84535 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 2 C 0.03 0.82 2.64 -92.92 -0.24 0.58 16 3 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.83 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.53 12.17 7.11 -10.98 -0.08 12.09 16 13 O -0.54 -14.08 15.44 5.54 0.09 -13.99 16 14 N -0.70 -13.04 4.70 -9.69 -0.05 -13.09 16 15 C 0.09 1.54 5.31 -83.39 -0.44 1.10 16 16 C 0.14 2.07 6.72 -39.08 -0.26 1.80 16 17 O -0.49 -7.05 13.25 -19.68 -0.26 -7.31 16 18 C -0.15 -1.79 9.98 -39.45 -0.39 -2.19 16 19 C -0.08 -0.82 10.04 -39.57 -0.40 -1.21 16 20 C -0.16 -1.99 10.02 -39.52 -0.40 -2.38 16 21 C 0.12 1.91 7.31 -39.28 -0.29 1.62 16 22 F -0.13 -2.27 17.08 2.25 0.04 -2.23 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.01 0.29 7.68 -51.93 -0.40 -0.11 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.41 6.78 8.41 -40.82 -0.34 6.44 16 28 H 0.40 4.84 9.06 45.56 0.41 5.25 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 281.05 15.07 4.24 4.24 Total: -1.00 -32.47 281.05 -5.14 -37.61 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.25 Total: 6.71 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.56 Total: -4.27 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.58 Total: -37.56 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.18 Total: -21.30 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.47 -5.14 -37.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597442400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.326 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds