Wall clock time and date at job start Mon Mar 30 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47150 * 2 1 4 4 C 1.50700 * 109.47179 * 119.99836 * 2 1 3 5 5 H 1.08000 * 120.00286 * 120.00289 * 4 2 1 6 6 C 1.37879 * 120.00047 * 299.99769 * 4 2 1 7 7 N 1.31517 * 119.99869 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00056 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47372 * 60.00419 * 8 6 4 10 10 H 1.48504 * 109.47215 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47370 * 300.00355 * 8 6 4 12 12 C 1.50700 * 109.47268 * 239.99892 * 2 1 3 13 13 O 1.21297 * 119.99968 * 240.00062 * 12 2 1 14 14 N 1.34779 * 120.00125 * 59.99679 * 12 2 1 15 15 C 1.40249 * 120.00020 * 185.04539 * 14 12 2 16 16 C 1.39251 * 120.09626 * 90.42847 * 15 14 12 17 17 O 1.35980 * 120.06691 * 0.04786 * 16 15 14 18 18 C 1.38567 * 119.86204 * 180.29714 * 16 15 14 19 19 C 1.38263 * 120.05064 * 359.72915 * 18 16 15 20 20 C 1.38236 * 120.19842 * 0.02562 * 19 18 16 21 21 C 1.38418 * 120.13697 * 359.97438 * 20 19 18 22 22 F 1.35107 * 120.02874 * 179.97438 * 21 20 19 23 23 H 1.09005 * 109.46694 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47009 * 300.00208 * 1 2 3 25 25 H 1.08998 * 109.47086 * 60.00198 * 1 2 3 26 26 H 0.97006 * 119.99897 * 179.97438 * 7 6 4 27 27 H 0.97006 * 119.99445 * 5.04872 * 14 12 2 28 28 H 0.96696 * 113.99576 * 270.25018 * 17 16 15 29 29 H 1.07997 * 119.97067 * 179.74266 * 18 16 15 30 30 H 1.08003 * 119.89850 * 179.97438 * 19 18 16 31 31 H 1.08000 * 119.93063 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8075 -1.1187 4.0078 10 1 1.8270 -0.4197 5.2205 11 1 1.8282 -2.5197 4.0083 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7067 -0.2500 -2.4546 15 6 2.0846 -0.9694 -3.5977 16 6 1.2334 -1.9357 -4.1277 17 8 0.0332 -2.1834 -3.5385 18 6 1.6143 -2.6479 -5.2537 19 6 2.8346 -2.3954 -5.8527 20 6 3.6791 -1.4331 -5.3315 21 6 3.3067 -0.7169 -4.2070 22 9 4.1341 0.2227 -3.6991 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7082 1.1610 3.4844 27 1 1.2111 0.5789 -2.5449 28 1 0.0645 -2.8656 -2.8539 29 1 0.9573 -3.4006 -5.6637 30 1 3.1292 -2.9522 -6.7300 31 1 4.6315 -1.2397 -5.8026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597442400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:09 Heat of formation + Delta-G solvation = -123.589546 kcal Electronic energy + Delta-G solvation = -18560.252150 eV Core-core repulsion = 15334.433445 eV Total energy + Delta-G solvation = -3225.818705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00274 -41.42336 -39.87487 -37.53297 -35.83630 -35.66738 -32.65243 -30.84653 -30.05764 -27.22963 -25.15687 -23.74228 -23.25555 -21.35518 -19.72575 -18.90867 -18.18338 -18.04459 -17.57951 -17.36973 -16.66535 -16.43703 -15.87639 -15.73532 -15.56181 -14.90277 -14.79281 -14.44068 -13.56320 -13.25621 -13.02817 -12.98779 -12.86145 -12.67279 -12.62690 -12.25823 -12.06049 -11.97544 -11.10312 -10.73867 -10.47017 -10.37377 -9.83633 -9.70727 -8.17315 -6.28819 -0.02111 0.03602 1.40591 1.42126 1.50703 1.74180 2.17455 2.37412 2.45764 2.95101 3.12172 3.43072 3.92239 4.03725 4.18753 4.27978 4.49660 4.70705 4.78446 4.91941 4.97547 5.04579 5.16516 5.24661 5.44483 5.49806 5.69753 5.78684 5.89935 6.14525 6.52585 6.60588 6.79224 7.31825 7.42726 8.88464 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.033192 B = 0.005897 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.362686 B = 4746.887570 C = 4984.476318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.028 3.972 3 H 0.038 0.962 4 C -0.531 4.531 5 H 0.050 0.950 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.532 3.468 13 O -0.575 6.575 14 N -0.679 5.679 15 C 0.047 3.953 16 C 0.124 3.876 17 O -0.497 6.497 18 C -0.144 4.144 19 C -0.058 4.058 20 C -0.156 4.156 21 C 0.087 3.913 22 F -0.148 7.148 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.266 0.734 27 H 0.416 0.584 28 H 0.405 0.595 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -4.830 -17.675 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.007 3.993 3 H 0.056 0.944 4 C -0.570 4.570 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.322 3.678 13 O -0.452 6.452 14 N -0.331 5.331 15 C -0.046 4.046 16 C 0.078 3.922 17 O -0.309 6.309 18 C -0.163 4.163 19 C -0.076 4.076 20 C -0.175 4.175 21 C 0.066 3.934 22 F -0.127 7.127 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.254 0.746 28 H 0.263 0.737 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.211 -4.943 -17.769 18.445 hybrid contribution 0.387 0.189 1.644 1.700 sum 0.598 -4.754 -16.125 16.822 Atomic orbital electron populations 1.21524 0.94487 0.99772 1.01567 1.18801 0.95666 0.95781 0.89068 0.94412 1.21213 1.31934 1.12907 0.90918 0.93198 1.25618 0.95085 0.95718 1.01480 1.69950 1.36966 1.23503 1.24500 0.85611 0.78559 0.78812 0.78657 1.20341 1.19842 1.19869 1.21786 0.77413 0.83742 0.84815 1.90516 1.38691 1.28903 1.87122 1.43370 1.59386 1.27274 1.03074 1.18440 0.94504 1.00525 0.91096 1.18766 0.85115 0.94075 0.94249 1.84714 1.26265 1.63045 1.56841 1.21791 0.98255 1.00601 0.95605 1.21428 0.91501 0.94937 0.99732 1.21499 1.03316 0.97688 0.94957 1.18387 0.88214 0.90909 0.95907 1.91463 1.70947 1.63110 1.87194 0.95260 0.90959 0.93414 0.92485 0.74586 0.73693 0.81391 0.79639 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.87 71.98 0.64 -4.71 16 2 C 0.03 1.45 2.64 -12.29 -0.03 1.41 16 3 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.53 -31.11 8.37 25.60 0.21 -30.89 16 5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -51.52 11.32 21.45 0.24 -51.28 16 8 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 C 0.53 25.38 7.11 87.66 0.62 26.00 16 13 O -0.57 -31.25 15.44 -3.08 -0.05 -31.29 16 14 N -0.68 -25.94 4.70 -302.95 -1.42 -27.36 16 15 C 0.05 1.61 5.31 38.19 0.20 1.81 16 16 C 0.12 3.50 6.72 22.59 0.15 3.65 16 17 O -0.50 -13.86 13.25 -93.33 -1.24 -15.09 16 18 C -0.14 -2.79 9.98 22.35 0.22 -2.57 16 19 C -0.06 -0.93 10.04 22.28 0.22 -0.71 16 20 C -0.16 -3.34 10.02 22.31 0.22 -3.12 16 21 C 0.09 2.73 7.31 22.46 0.16 2.90 16 22 F -0.15 -5.37 17.08 44.97 0.77 -4.60 16 23 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 25 H 0.05 1.84 7.68 -2.39 -0.02 1.82 16 26 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 27 H 0.42 14.06 8.41 -92.70 -0.78 13.28 16 28 H 0.40 9.69 9.06 -74.06 -0.67 9.02 16 29 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -72.46 281.05 3.15 -69.31 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.26 Total: 17.81 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 3.08 Total: -4.62 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -1.18 Total: -78.64 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.28 Total: -46.39 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.77 Total: -4.60 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.46 3.15 -69.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597442400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.281 kcal (2) G-P(sol) polarization free energy of solvation -72.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds