Wall clock time and date at job start Mon Mar 30 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33397 * 122.53984 * 2 1 4 4 S 1.75879 * 109.59210 * 180.02562 * 3 2 1 5 5 C 1.75884 * 90.97335 * 359.82996 * 4 3 2 6 6 C 1.33384 * 109.59434 * 0.30221 * 5 4 3 7 7 C 1.50702 * 122.54345 * 179.90637 * 6 5 4 8 8 N 1.46505 * 109.46917 * 259.71003 * 7 6 5 9 9 C 1.34774 * 119.99513 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00513 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99464 * 179.97438 * 9 8 7 12 12 H 1.09004 * 109.47210 * 60.00192 * 11 9 8 13 13 C 1.53000 * 109.47313 * 300.00010 * 11 9 8 14 14 C 1.50702 * 109.46869 * 179.97438 * 11 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 H 1.09004 * 109.47115 * 269.97644 * 1 2 3 23 23 H 1.08993 * 109.47389 * 29.97702 * 1 2 3 24 24 H 1.09000 * 109.47339 * 149.97633 * 1 2 3 25 25 H 1.08000 * 125.20145 * 0.05876 * 3 2 1 26 26 H 1.08000 * 125.20371 * 180.17673 * 5 4 3 27 27 H 1.08998 * 109.47129 * 139.70953 * 7 6 5 28 28 H 1.09002 * 109.46506 * 19.70396 * 7 6 5 29 29 H 0.96995 * 119.99906 * 359.97438 * 8 7 6 30 30 H 1.09004 * 109.47084 * 299.99675 * 13 11 9 31 31 H 1.08994 * 109.47175 * 60.00247 * 13 11 9 32 32 H 1.09001 * 109.47192 * 180.02562 * 13 11 9 33 33 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2245 1.1246 0.0000 4 16 3.9385 0.7305 -0.0007 5 6 3.5736 -0.9901 0.0042 6 6 2.2516 -1.1670 -0.0006 7 6 1.6165 -2.5337 -0.0002 8 7 1.1923 -2.8754 -1.3602 9 6 0.5954 -4.0593 -1.6023 10 8 0.4099 -4.8418 -0.6946 11 6 0.1585 -4.4105 -3.0012 12 1 1.0248 -4.4121 -3.6628 13 6 -0.8569 -3.3772 -3.4930 14 6 -0.4753 -5.7778 -3.0010 15 1 -0.5542 -6.3363 -2.0800 16 6 -0.9600 -6.3131 -4.1756 17 7 -0.8642 -5.6328 -5.2970 18 14 -1.7525 -8.0046 -4.1739 19 1 -3.2102 -7.8681 -3.9253 20 1 -1.5339 -8.6550 -5.4909 21 1 -1.1437 -8.8356 -3.1044 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5142 25 1 1.8154 2.1241 0.0009 26 1 4.3077 -1.7822 0.0083 27 1 0.7500 -2.5314 0.6610 28 1 2.3395 -3.2700 0.3507 29 1 1.3410 -2.2497 -2.0862 30 1 -1.7232 -3.3756 -2.8314 31 1 -0.3981 -2.3885 -3.4932 32 1 -1.1732 -3.6315 -4.5046 33 1 -1.2049 -6.0096 -6.1234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597584098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:25 Heat of formation + Delta-G solvation = -17.897857 kcal Electronic energy + Delta-G solvation = -16227.669552 eV Core-core repulsion = 13572.647159 eV Total energy + Delta-G solvation = -2655.022394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37358 -38.12814 -33.83585 -33.66731 -31.23390 -30.37390 -28.17371 -25.66159 -25.08917 -22.64603 -21.90868 -19.38404 -18.16261 -17.72176 -16.26525 -16.00477 -15.18507 -14.92214 -14.35750 -14.24417 -13.82377 -13.24133 -13.03931 -12.86848 -12.59948 -12.22425 -12.06860 -11.81490 -11.55737 -11.40250 -10.99883 -10.86546 -10.69254 -10.63360 -10.23081 -9.93479 -8.96363 -8.92992 -8.60045 -8.43873 -8.36493 -8.22053 -6.00370 -4.03324 0.89062 1.56329 1.87424 2.47802 3.35698 3.41326 3.48521 3.77176 4.16208 4.51511 4.77798 4.84122 5.21049 5.32653 5.34078 5.44736 5.55869 5.63124 5.82773 5.92897 6.11478 6.31433 6.40615 6.48479 6.65481 6.86041 6.95921 7.09996 7.51059 7.78940 8.02379 8.18783 8.48898 9.05819 9.27577 9.62157 11.07191 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.043930 B = 0.004446 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.229641 B = 6296.131176 C = 6384.741163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.085 4.085 3 C -0.221 4.221 4 S 0.085 5.915 5 C -0.191 4.191 6 C -0.112 4.112 7 C 0.180 3.820 8 N -0.742 5.742 9 C 0.519 3.481 10 O -0.547 6.547 11 C 0.029 3.971 12 H 0.052 0.948 13 C -0.132 4.132 14 C -0.500 4.500 15 H 0.074 0.926 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.900 3.100 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.166 0.834 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.397 0.603 30 H 0.031 0.969 31 H 0.012 0.988 32 H 0.093 0.907 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 14.682 8.307 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.356 4.356 4 S 0.351 5.649 5 C -0.327 4.327 6 C -0.125 4.125 7 C 0.053 3.947 8 N -0.396 5.396 9 C 0.309 3.691 10 O -0.423 6.423 11 C 0.008 3.992 12 H 0.069 0.931 13 C -0.190 4.190 14 C -0.538 4.538 15 H 0.092 0.908 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.180 0.820 26 H 0.184 0.816 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.231 0.769 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.111 0.889 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.100 14.947 8.788 19.138 hybrid contribution -1.490 -1.237 -0.401 1.978 sum 6.610 13.710 8.388 17.378 Atomic orbital electron populations 1.20605 0.89472 1.03478 1.02483 1.18868 0.97693 0.91367 1.01782 1.25375 0.95586 1.02228 1.12447 1.84178 1.06673 1.00615 1.73482 1.25560 0.99162 0.99048 1.08948 1.18979 0.92721 0.96145 1.04667 1.19745 0.98523 0.90029 0.86355 1.46346 1.63771 1.20610 1.08897 1.21995 0.74638 0.79012 0.93439 1.90530 1.54991 1.49397 1.47360 1.18871 0.96705 0.96826 0.86767 0.93052 1.21736 0.98355 0.94332 1.04557 1.21156 1.37589 0.99905 0.95153 0.90794 1.24953 0.96038 0.97916 0.95378 1.69876 1.47252 1.37652 0.98886 0.86456 0.79586 0.84016 0.77175 1.20697 1.21336 1.19755 0.91163 0.91528 0.90423 0.81971 0.81617 0.91107 0.91436 0.76947 0.95027 0.96927 0.88874 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.60 36.00 0.35 -0.76 16 2 C -0.08 -0.99 5.80 -106.25 -0.62 -1.61 16 3 C -0.22 -2.28 10.98 29.04 0.32 -1.96 16 4 S 0.09 0.85 23.34 -107.50 -2.51 -1.66 16 5 C -0.19 -2.17 10.95 29.04 0.32 -1.85 16 6 C -0.11 -1.42 5.17 -106.25 -0.55 -1.97 16 7 C 0.18 2.72 5.12 -5.19 -0.03 2.70 16 8 N -0.74 -13.00 5.18 -61.47 -0.32 -13.31 16 9 C 0.52 11.84 7.15 -10.99 -0.08 11.77 16 10 O -0.55 -14.29 15.46 5.56 0.09 -14.20 16 11 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 12 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.13 -3.03 8.86 37.16 0.33 -2.70 16 14 C -0.50 -14.24 8.38 -34.44 -0.29 -14.53 16 15 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 17 N -0.90 -25.28 11.31 55.43 0.63 -24.66 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 24 H 0.08 0.99 7.12 -51.93 -0.37 0.62 16 25 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 26 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.07 1.11 7.69 -51.93 -0.40 0.71 16 28 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.40 6.31 7.88 -40.82 -0.32 5.99 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 32 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -30.82 294.20 -7.53 -38.35 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.24 Total: 3.07 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.59 Total: -8.91 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.31 Total: -37.97 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.09 Total: -14.20 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.82 -7.53 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597584098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.453 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds